Andrew Adey

Summary

Publications

  1. pmc Rapid, low-input, low-bias construction of shotgun fragment libraries by high-density in vitro transposition
    Andrew Adey
    Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA
    Genome Biol 11:R119. 2010
  2. pmc The haplotype-resolved genome and epigenome of the aneuploid HeLa cancer cell line
    Andrew Adey
    Department of Genome Sciences, University of Washington, Seattle, Washington 98115, USA
    Nature 500:207-11. 2013
  3. pmc Capturing native long-range contiguity by in situ library construction and optical sequencing
    Jerrod J Schwartz
    Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA
    Proc Natl Acad Sci U S A 109:18749-54. 2012
  4. pmc Ultra-low-input, tagmentation-based whole-genome bisulfite sequencing
    Andrew Adey
    Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA
    Genome Res 22:1139-43. 2012
  5. pmc Haplotype-resolved genome sequencing of a Gujarati Indian individual
    Jacob O Kitzman
    Department of Genome Sciences, University of Washington School of Medicine, Seattle, Washington, USA
    Nat Biotechnol 29:59-63. 2011

Collaborators

Detail Information

Publications5

  1. pmc Rapid, low-input, low-bias construction of shotgun fragment libraries by high-density in vitro transposition
    Andrew Adey
    Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA
    Genome Biol 11:R119. 2010
    ..We also extend its capabilities by developing protocols for sub-nanogram library construction, exome capture from 50 ng of input DNA, PCR-free and colony PCR library construction, and 96-plex sample indexing...
  2. pmc The haplotype-resolved genome and epigenome of the aneuploid HeLa cancer cell line
    Andrew Adey
    Department of Genome Sciences, University of Washington, Seattle, Washington 98115, USA
    Nature 500:207-11. 2013
    ..These data provide an extensively phased, high-quality reference genome for past and future experiments relying on HeLa, and demonstrate the value of haplotype resolution for characterizing cancer genomes and epigenomes...
  3. pmc Capturing native long-range contiguity by in situ library construction and optical sequencing
    Jerrod J Schwartz
    Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA
    Proc Natl Acad Sci U S A 109:18749-54. 2012
    ....
  4. pmc Ultra-low-input, tagmentation-based whole-genome bisulfite sequencing
    Andrew Adey
    Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA
    Genome Res 22:1139-43. 2012
    ..We demonstrate Tn5mC-seq by sequencing the methylome of a human lymphoblastoid cell line to ∼8.6× high-quality coverage of each strand...
  5. pmc Haplotype-resolved genome sequencing of a Gujarati Indian individual
    Jacob O Kitzman
    Department of Genome Sciences, University of Washington School of Medicine, Seattle, Washington, USA
    Nat Biotechnol 29:59-63. 2011
    ..This method also facilitates the analysis of structural variation, for example, to anchor novel insertions to specific locations and haplotypes...