Research Topics
Genomes and Genes
Species | Fang Chi HsuSummaryAffiliation: Wake Forest University School of Medicine Country: USA Publications
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Detail Information
Publications
Assessment of gene-covariate interactions by incorporating covariates into association mappingYen Feng Chiu
Division of Biostatistics and Bioinformatics, Institute of Population Health Sciences, National Health Research Institutes, 35 Keyan Road, Zhunan, Miaoli County 350, Taiwan, Republic of China
BMC Proc 3:S85. 2009..Incorporating the covariates into the association mapping provides a mechanism 1) to evaluate gene-gene and gene-environment interactions and 2) to dissect the pathways underlying disease induction/progress in quantitative antibodies...
Assessing genotype x environment interaction in linkage mapping using affected sib pairsYi Shin Chen
Department of Nursing, Yuanpei University, NO, 306, Yuanpei Street, Hsinchu 30015, Taiwan, Republic of China
BMC Proc 1:S71. 2007..Results from our analyses suggested that incorporating smoking status into linkage analyses could increase the statistical power of the multipoint linkage approach applied here and help elucidate the etiology of RA...
Incorporating quantitative variables into linkage analysis using affected sib pairsYen Feng Chiu
Division of Biostatistics and Bioinformatics, National Health Research Institutes, 35 Keyan Road, Zhunan, Miaoli 350 Taiwan, Republic of China
BMC Proc 1:S98. 2007..This mapping technique helps to narrow down the regions of interest when searching for a susceptibility locus and to elucidate underlying disease mechanisms...
Heritability of body composition measured by DXA in the diabetes heart studyFang Chi Hsu
Department of Public Health Sciences, Wake Forest University School of Medicine, Medical Center Blvd, Winston Salem, NC 27157, USA
Obes Res 13:312-9. 2005..The purpose of this study was to investigate the heritability of body composition measured by DXA in the Diabetes Heart Study (DHS)...
Association between inflammatory components and physical function in the health, aging, and body composition study: a principal component analysis approachFang Chi Hsu
Department of Biostatistical Sciences, Wake Forest University School of Medicine, 100 North Main Street, Suite 2323, Winston Salem, NC 27101, USA
J Gerontol A Biol Sci Med Sci 64:581-9. 2009..This study uses principal component analysis to identify inflammatory "component(s)" and evaluates associations between the identified component(s) and measures of physical function...
The impact of pedigree structure on heritability estimates for pulse pressure in three studiesFang Chi Hsu
Department of Public Health Sciences, Wake Forest University School of Medicine, Winston Salem, NC 27157, USA
Hum Hered 60:63-72. 2005....
Comparison of significance level at the true location using two linkage approaches: LODPAL and GENEFINDERFang Chi Hsu
Section on Biostatics, Department of Public Health Sciences, Wake Forest University School of Medicine, Winston Salem, North Carolina, USA
BMC Genet 4:S46. 2003..Individuals with SBP greater than 130 mm Hg were defined as affected individuals, and all others as unaffected. Total cholesterol was treated as a covariate...
Evaluation of the late life disability instrument in the Lifestyle Interventions and Independence for Elders Pilot (LIFE-P) studyFang Chi Hsu
Department of Biostatistical Sciences, Wake Forest University School of Medicine, Winston Salem, North Carolina, USA
Health Qual Life Outcomes 8:115. 2010..In this paper we examine the measurement properties of the LLDI using data from the Lifestyle Interventions and Independence for Elders Pilot (LIFE-P) study...
Inherited genetic markers discovered to date are able to identify a significant number of men at considerably elevated risk for prostate cancerJielin Sun
Center for Cancer Genomics, Wake Forest University School of Medicine, Winston Salem, North Carolina 27157, USA
Prostate 71:421-30. 2011..Their ability to identify men at high risk and the impact of increasing numbers of SNPs on predictive performance are not well understood...
Association of prostate cancer risk variants with clinicopathologic characteristics of the diseaseJianfeng Xu
Center for Cancer Genomics, Wake Forest University School of Medicine, Winston Salem, North Carolina, USA
Clin Cancer Res 14:5819-24. 2008..Fifteen independent genetic variants have been implicated in prostate cancer risk by recent genome-wide association studies. However, their association with clinicopathologic features of prostate cancer is uncertain...
Association between two unlinked loci at 8q24 and prostate cancer risk among European AmericansS Lilly Zheng
Center for Human Genomics, Wake Forest University School of Medicine, Winston Salem, NC, USA
J Natl Cancer Inst 99:1525-33. 2007..We examined whether multiple independent risk variants exist in this region and whether the strength of observed associations differs as a function of disease aggressiveness...
Prostate cancer risk-associated variants reported from genome-wide association studies: meta-analysis and their contribution to genetic VariationSeong Tae Kim
Center for Cancer Genomics, Wake Forest University School of Medicine, Winston Salem, NC 27157, USA
Prostate 70:1729-38. 2010..These SNPs may potentially be used for risk prediction. To date, there is not a stable estimate of their effect on PCa risk and their contribution to the genetic variation both of which are important for future risk prediction...
Inherited genetic variant predisposes to aggressive but not indolent prostate cancerJianfeng Xu
Center for Cancer Genomics, Wake Forest University School of Medicine, Winston Salem, NC 27157, USA
Proc Natl Acad Sci U S A 107:2136-40. 2010....
Association analysis of the plasminogen activator inhibitor-1 4G/5G polymorphism in Hispanics and African Americans: the IRAS family studyJeannette T Bensen
Center for Human Genomics, Department of Internal Medicine, Wake Forest University School of Medicine, Winston Salem, NC, USA
Hum Hered 57:128-37. 2004..In addition, we explore whether transforming growth factor (TGF-beta1), a key regulator of PAI-1 expression, modifies the influence of the PAI-1 4G/5G polymorphism on these traits...
Interactions of sequence variants in interleukin-1 receptor-associated kinase4 and the toll-like receptor 6-1-10 gene cluster increase prostate cancer riskJielin Sun
Medical Center Boulevard, Winston Salem, NC 27157, USA
Cancer Epidemiol Biomarkers Prev 15:480-5. 2006..Although this study was based on a priori hypothesis and was designed to address many common issues facing this type of study, our results need confirmation in even larger studies...
Comparison of two methods for estimating absolute risk of prostate cancer based on single nucleotide polymorphisms and family historyFang Chi Hsu
Center for Cancer Genomics, Wake Forest University School of Medicine, Winston Salem, North Carolina 27157, USA
Cancer Epidemiol Biomarkers Prev 19:1083-8. 2010..These results suggest that method 2 is superior to method 1 in estimating absolute risk if the purpose of risk prediction is to identify high-risk individuals...
Association between sequence variants at 17q12 and 17q24.3 and prostate cancer risk in European and African AmericansJielin Sun
Center for Human Genomics, Wake Forest University School of Medicine, Winston Salem, North Carolina, USA
Prostate 68:691-7. 2008..Three SNPs at 17q12 and four SNPs at 17q24.3 were recently identified to be associated with prostate cancer risk using a genome-wide association study...
Cumulative association of five genetic variants with prostate cancerS Lilly Zheng
Center for Human Genomics, Wake Forest University School of Medicine, Winston Salem, NC 27157, USA
N Engl J Med 358:910-9. 2008..3--have been associated with prostate cancer. Each SNP has only a moderate association, but when SNPs are combined, the association may be stronger...
Sequence variants at 22q13 are associated with prostate cancer riskJielin Sun
Center for Cancer Genomics, Wake Forest University School of Medicine, Winston Salem, NC 27157, USA
Cancer Res 69:10-5. 2009..11 (95% CI, 1.04-1.19; P = 0.004). The risk-associated variants are located within the genomic region of TNRC6B, a gene involved in miRNA-mediated mRNA degradation. Additional studies are warranted to further confirm the association...
The interaction of four genes in the inflammation pathway significantly predicts prostate cancer riskJianfeng Xu
Center for Human Genomics, Wake Forest University School of Medicine, Medical Center Boulevard, Winston Salem, NC 27157, USA
Cancer Epidemiol Biomarkers Prev 14:2563-8. 2005....
A novel prostate cancer susceptibility locus at 19q13Fang Chi Hsu
Center for Cancer Genomics, Wake Forest University School of Medicine, Winston Salem, North Carolina, USA
Cancer Res 69:2720-3. 2009..A fine-mapping study in a 110-kb region at 19q13 among CAPS and JHH study populations revealed that rs887391 was the most strongly associated SNP in the region. Additional confirmation studies of this region are warranted...
Meta-analysis of association of rare mutations and common sequence variants in the MSR1 gene and prostate cancer riskJielin Sun
Center for Human Genomics, Wake Forest University School of Medicine, Winston Salem, North Carolina 27157, USA
Prostate 66:728-37. 2006..MSR1 has been reported to be associated with increased risk of prostate cancer (PCa)...
A multigenic approach to evaluating prostate cancer risk in a systematic replication studyFang Chi Hsu
Center for Human Genomics, Wake Forest University School of Medicine, Medical Center Blvd, Winston Salem, NC 27157, USA
Cancer Genet Cytogenet 183:94-8. 2008..99, P = 0.0014). A significant trend relationship was observed (P < 0.0001). In the present study, additive effects but not multiplicative effects among these six polymorphisms with significant main effects were observed...
Evidence for two independent prostate cancer risk-associated loci in the HNF1B gene at 17q12Jielin Sun
Center for Cancer Genomics, Wake Forest University School of Medicine, Winston Salem, North Carolina 27157, USA
Nat Genet 40:1153-5. 2008..7 x 10(-9) for an allelic test of the seven studies combined. The association at each SNP remained significant after adjustment for the other SNP...
Calcified atherosclerotic plaque and bone mineral density in type 2 diabetes: the diabetes heart studyJ Jeffrey Carr
Department of Radiology, Wake Forest University School of Medicine, Winston Salem, NC, USA
Bone 42:43-52. 2008..QCT determined vBMD was more strongly related to CP than aBMD by DXA. The relation between CP and BMD in diabetes is influenced by age, sex, and ethnicity, with further effect modification by hormone replacement therapy...
Hepatic steatosis and subclinical cardiovascular disease in a cohort enriched for type 2 diabetes: the Diabetes Heart StudyRyan L McKimmie
Department of Internal Medicine, Wake Forest University School of Medicine, Winston Salem, North Carolina 27157, USA
Am J Gastroenterol 103:3029-35. 2008....
Lifestyle Interventions and Independence for Elders pilot study: recruitment and baseline characteristicsJeffrey A Katula
Department of Health and Exercise Science, Wake Forest University, Winston Salem, North Carolina 27109, USA
J Am Geriatr Soc 55:674-83. 2007..To describe several recruitment parameters derived from the Lifestyle Interventions and Independence for Elders pilot (LIFE-P) study for use in a full-scale trial of mobility disability prevention...
Association between non-subcutaneous adiposity and calcified coronary plaque: a substudy of the Multi-Ethnic Study of AtherosclerosisJingzhong Ding
Sticht Center on Aging, Wake Forest University School of Medicine, Winston Salem, NC 27157, USA
Am J Clin Nutr 88:645-50. 2008..Excessive non-subcutaneous fat deposition may impair the functions of surrounding tissues and organs through the release of inflammatory cytokines and free fatty acids...
Fine mapping association study and functional analysis implicate a SNP in MSMB at 10q11 as a causal variant for prostate cancer riskBao Li Chang
Center for Cancer Genomics, Wake Forest University School of Medicine, Winston Salem, NC 27157, USA
Hum Mol Genet 18:1368-75. 2009....
Kidney volume associations with subclinical renal and cardiovascular disease: the Diabetes Heart StudyAnita M Saran
Department of Internal Medicine Nephrology, Wake Forest University School of Medicine, Winston Salem, NC 27157 1053, USA
Am J Nephrol 28:366-71. 2008..The prognostic significance of total kidney volume (TKV) in subjects with type 2 diabetes mellitus (T2DM) is unknown...
Renal artery calcified plaque associations with subclinical renal and cardiovascular diseaseBarry I Freedman
Department of Internal Medicine Nephrology, Wake Forest University School of Medicine, Winston Salem, North Carolina 27157 1053, USA
Kidney Int 65:2262-7. 2004..The prognostic significance of renal artery calcified plaque (RAC) and its relationship with renal function, albuminuria, and systemic atherosclerosis are unknown...
Genetic variants and family history predict prostate cancer similar to prostate-specific antigenS Lilly Zheng
Center for Cancer Genomics, Wake Forest University School of Medicine, Winston Salem, North Carolina, USA
Clin Cancer Res 15:1105-11. 2009..68. The goal of the present study is to assess the ability of genetic variants as a PSA-independent method to predict prostate cancer risk...
Long-term physical activity and inflammatory biomarkers in older adultsKristen M Beavers
Section on Gerontology and Geriatric Medicine, J Paul Sticht Center on Aging, Department of Internal Medicine, Wake Forest University School of Medicine, Winston Salem, NC 27157, USA
Med Sci Sports Exerc 42:2189-96. 2010..The purpose of this study was to determine the effects of a 12-month physical activity (PA) intervention on inflammatory biomarkers in elderly men and women...
Association between carotid intima-media thickness and pericardial fat in the Multi-Ethnic Study of Atherosclerosis (MESA)Elsayed Z Soliman
Department of Epidemiology and Prevention, Wake Forest University School of Medicine, Winston Salem, North Carolina 27104, USA
J Stroke Cerebrovasc Dis 19:58-65. 2010..We sought to examine the association between carotid IMT and PF, and to examine whether such an association is independent from common atherosclerosis risk factors including measures of overall adiposity...
Brachial flow-mediated dilation predicts incident cardiovascular events in older adults: the Cardiovascular Health StudyJoseph Yeboah
Department of Internal Medicine Cardiology, Wake Forest University School of Medicine, Medical Center Blvd, Winston Salem, NC 27157, USA
Circulation 115:2390-7. 2007..We assessed the hypothesis that FMD predicts incident cardiovascular events in a population-based cohort of older adults...
Exercise training and plasma C-reactive protein and interleukin-6 in elderly peopleBarbara J Nicklas
Section on Gerontology and Geriatric Medicine, J Paul Sticht Center on Aging, Wake Forest University School of Medicine, Winston Salem, North Carolina, USA
J Am Geriatr Soc 56:2045-52. 2008..To determine the effects of a long-term exercise intervention on two prominent biomarkers of inflammation (C-reactive protein (CRP) and interleukin-6 (IL-6)) in elderly men and women...
Review of the Diabetes Heart Study (DHS) family of studies: a comprehensively examined sample for genetic and epidemiological studies of type 2 diabetes and its complicationsDonald W Bowden
Center for Diabetes Research, Wake Forest University School of Medicine, Medical Center Blvd, Winston Salem, North Carolina, USA
Rev Diabet Stud 7:188-201. 2010..The aim of this review is to provide a collective overview of the major results from the DHS family of studies, and relate them to the larger body of biomedical investigations of diabetes and its complications...
Visceral fat and prevalence of hypertension among African Americans and Hispanic Americans: findings from the IRAS family studyCapri G Foy
Division of Public Health Sciences, Wake Forest University School of Medicine, Winston Salem, North Carolina, USA
Am J Hypertens 21:910-6. 2008..This was a cross-sectional epidemiological study in which African-American and Hispanic-American families were recruited from three clinical sites. The main outcome measure was prevalent hypertension, as defined by standardized protocol...
Physical activity in prefrail older adults: confidence and satisfaction related to physical functionW Jack Rejeski
Department of Health and Exercise Science, Box 7868, Wake Forest University, Winston Salem, NC 27109, USA
J Gerontol B Psychol Sci Soc Sci 63:P19-26. 2008..This is an important finding in light of the importance of these process variables in behavior change and quality of life...
Prostate cancer risk associated loci in African AmericansJianfeng Xu
Center for Cancer Genomics, Wake Forest University School of Medicine, Winston Salem, NC 27157, USA
Cancer Epidemiol Biomarkers Prev 18:2145-9. 2009..However, studies with larger numbers of AA subjects are needed, and this will likely require a major collaborative effort to combine multiple AA study populations...
Evaluation of candidate genes for cholinesterase activity in farmworkers exposed to organophosphorus pesticides: association of single nucleotide polymorphisms in BCHETimothy D Howard
Center for Genomics and Personalized Medicine Research, Wake Forest University School of Medicine, Winston Salem, North Carolina 27157, USA
Environ Health Perspect 118:1395-9. 2010..To understand fully the links between pesticide exposure and potential human disease, analyses must be able to consider genetic variability in pesticide metabolism...
Variability of serum soluble intercellular adhesion molecule-1 measurements attributable to a common polymorphismThomas C Register
Department of Pathology, Section on Comparative Medicine, Wake Forest University School of Medicine, Winston-Salem, NC 27157, USA
Clin Chem 50:2185-7. 2004
Administration of the peroxisomal proliferator-activated receptor gamma agonist pioglitazone during fractionated brain irradiation prevents radiation-induced cognitive impairmentWeiling Zhao
Department of Radiation Oncology, Brain Tumor Center of Excellence, Wake Forest University School of Medicine, Winston Salem, NC 27157, USA
Int J Radiat Oncol Biol Phys 67:6-9. 2007..We hypothesized that administration of the anti-inflammatory peroxisomal proliferator-activated receptor gamma (PPARgamma) agonist pioglitazone (Pio) to adult male rats would inhibit radiation-induced cognitive impairment...
Liver attenuation, pericardial adipose tissue, obesity, and insulin resistance: the Multi-Ethnic Study of Atherosclerosis (MESA)Paul A McAuley
Department of Human Performance and Sport Sciences, Winston Salem State University, Winston Salem, North Carolina, USA
Obesity (Silver Spring) 19:1855-60. 2011..10 ± 0.01 for whites, 0.11 ± 0.02 for Chinese, 0.08 ± 0.2 for blacks, and 0.14 ± 0.01 for Hispanics. Liver attenuation and pericardial adipose tissue were associated with insulin resistance, independent of BMI and waist circumference...
The association of pericardial fat with incident coronary heart disease: the Multi-Ethnic Study of Atherosclerosis (MESA)Jingzhong Ding
Sticht Center on Aging, Wake Forest University School of Medicine, Winston Salem, NC, USA
Am J Clin Nutr 90:499-504. 2009..Cross-sectional studies suggest that pericardial fat is positively associated with coronary artery disease independent of total body fat...
Two independent prostate cancer risk-associated Loci at 11q13S Lilly Zheng
Center for Cancer Genomics, Center for Human Genomics, Wake Forest University School of Medicine, Winston Salem, North Carolina, USA
Cancer Epidemiol Biomarkers Prev 18:1815-20. 2009..Additional confirmation studies at locus 2 and functional studies for both loci are needed to advance our knowledge on the etiology of prostate cancer...
Estimation of absolute risk for prostate cancer using genetic markers and family historyJianfeng Xu
Center for Cancer Genomics, Wake Forest University School of Medicine, Winston Salem, North Carolina, USA
Prostate 69:1565-72. 2009..Multiple DNA sequence variants in the form of single-nucleotide polymorphisms (SNPs) have been found to be reproducibly associated with prostate cancer (PCa) risk...
Multipoint linkage disequilibrium mapping approach: incorporating evidence of linkage and linkage disequilibrium from unlinked regionFang-Chi Hsu
Section on Biostatistics, Department of Public Health Sciences, Wake Forest University School of Medicine, Winston-Salem, North Carolina 21205, USA
Genet Epidemiol 25:1-13. 2003..67 cM, with a 95% confidence interval of (8.75, 14.59), and the test statistic shows significant evidence of linkage and LD (P-value=0.0198) in this region of chromosome 8...
PPARalpha ligands inhibit radiation-induced microglial inflammatory responses by negatively regulating NF-kappaB and AP-1 pathwaysSriram Ramanan
Department of Cancer Biology, Comprehensive Cancer Center, Wake Forest University School of Medicine, Winston Salem, NC 27157, USA
Free Radic Biol Med 45:1695-704. 2008..Taken together, these data support the hypothesis that activation of PPARalpha can modulate the radiation-induced microglial proinflammatory response...
Effects of covariates: a summary of Group 5 contributionsElizabeth R Hauser
Section of Medical Genetics, Department of Medicine, Center for Human Genetics, Duke University Medical Center, Durham, North Carolina 27710, USA
Genet Epidemiol 25:S43-9. 2003..Finally, the results of Group 5 studies show that inclusion of covariates can increase the power to detect genes for complex traits, and has the potential to advance an understanding of the role of genes in these complex traits...
Multipoint linkage disequilibrium mapping for complex diseasesKung Yee Liang
Department of Biostatistics, Johns Hopkins Bloomberg School of Public Health, Johns Hopkins University, Baltimore, Maryland 21205, USA
Genet Epidemiol 25:285-92. 2003..Furthermore, such discrepancy in preferential transmission was most evident among probands with early onset age (6 years old or younger)...
Health-related quality of life in older adults at risk for disabilityErik J Groessl
Health Services Research and Development Unit, VA San Diego Healthcare System, San Diego, California 92161, USA
Am J Prev Med 33:214-8. 2007..The objective of this study is to describe and examine correlates of health-related quality of life in this population subgroup using baseline data from a larger intervention study...
A support vector machine approach for detecting gene-gene interactionShyh Huei Chen
Department of Industrial Management, National Yunlin University of Science and Technology, Yunlin, Taiwan
Genet Epidemiol 32:152-67. 2008..We would like to make the support vector machine and combinatorial optimization techniques more accessible to genetic epidemiologists, and to promote the use and extension of these powerful approaches...
Unified sampling approach for multipoint linkage disequilibrium mapping of qualitative and quantitative traitsFang-Chi Hsu
Department of Biostatistics, Johns Hopkins Bloomberg School of Public Health, Baltimore, Maryland, USA
Genet Epidemiol 22:298-312. 2002..84, 43.02) through the 20-cM region framed by markers D12S1052 and D12S1064 on chromosome 12. The test statistic shows strong evidence of linkage and LD (chi-square statistic = 18.39 with 2 df, P-value = 0.0001)...
