Research Topics
| Joshua S YuanSummaryAffiliation: University of Tennessee Country: USA Publications
| Collaborators
|
Detail Information
Publications
Statistical analysis of real-time PCR dataJoshua S Yuan
Department of Plant Sciences, University of Tennessee, Knoxville, TN 37996, USA
BMC Bioinformatics 7:85. 2006..Based on the standard curve method and other useful data analysis methods, we present and compare four statistical approaches and models for the analysis of real-time PCR data...- Transcriptional responses of Arabidopsis thaliana plants to As (V) stressJason M Abercrombie
Department of Plant Sciences, University of Tennessee, 2431 Joe Johnson Blvd, Knoxville, TN 37996 4561, USA
BMC Plant Biol 8:87. 2008..There is a strong chemical similarity between arsenate [As (V)] and phosphate (Pi). Whole genome oligonucleotide microarrays were employed to investigate the transcriptional responses of Arabidopsis thaliana plants to As (V) stress... - Statistical tools for transgene copy number estimation based on real-time PCRJoshua S Yuan
Department of Plant Sciences, University of Tennessee, Knoxville, TN 37996, USA
BMC Bioinformatics 8:S6. 2007..Despite the recent progresses in statistical analysis of real-time PCR, few publications have integrated these advancements in real-time PCR based transgene copy number determination... - Differential expression of genes in soybean in response to the causal agent of Asian soybean rust (Phakopsora pachyrhizi Sydow) is soybean growth stage-specificDilip R Panthee
Department of Plant Sciences, 252 Ellington Plant Sciences, The University of Tennessee, 2431 Joe Johnson Dr, Knoxville, TN, 37996, USA
Theor Appl Genet 118:359-70. 2009..We performed real-time RT-PCR analysis on nine of these genes from both growth stages and both plant species and found results to be congruent with those from the microarray analysis... - Molecular and genomic basis of volatile-mediated indirect defense against insects in riceJoshua S Yuan
Department of Plant Sciences, University of Tennessee, Knoxville, TN 37996, USA
Plant J 55:491-503. 2008..Evolution of the genetic basis governing volatile terpenoid biosynthesis for indirect defense is discussed... - Statistical methods for efficiency adjusted real-time PCR quantificationJoshua S Yuan
UTIA Genomics Hub, The University of Tennessee, Knoxville, TN 37996, USA
Biotechnol J 3:112-23. 2008..Our results underline the differences between the efficiency adjusted Delta Delta Ct methods and previously published methods, thereby better identifying and controlling the source of errors introduced by real-time PCR data analysis... - Characterization of the horseweed (Conyza canadensis) transcriptome using GS-FLX 454 pyrosequencing and its application for expression analysis of candidate non-target herbicide resistance genesYanhui Peng
Department of Plant Sciences, University of Tennessee, Knoxville, TN USA
Pest Manag Sci 66:1053-62. 2010..However, available sequence data for this species are scant. The transcriptomic sequence should be useful for gene discovery, and to help elucidate the non-target-based glyphosate resistance mechanism and the genomic basis of weediness... - A type IV P-type ATPase affects insulin-mediated glucose uptake in adipose tissue and skeletal muscle in miceMadhu S Dhar
Large Animal Clinical Sciences, College of Veterinary Medicine, University of Tennessee, Knoxville, TN 37996 4500, USA
J Nutr Biochem 17:811-20. 2006..In conclusion, experiments suggest that the target genes and/or their cognate factors in conjunction with Atp10c presumably affect the normal translocation and sequestration of GLUT4 in both the target tissues... - Plants to power: bioenergy to fuel the futureJoshua S Yuan
Department of Plant Sciences, University of Tennessee, Knoxville, TN 37996, USA
Trends Plant Sci 13:421-9. 2008.... - Gene alterations by peroxisome proliferator-activated receptor gamma agonists in human colorectal cancer cellsMaria Cekanova
Laboratory of Environmental Carcinogenesis, Department of Pathobiology, College of Veterinary Medicine, The University of Tennessee, Knoxville, TN 37996, USA
Int J Oncol 32:809-19. 2008.... - Plant systems biology comes of ageJoshua S Yuan
UTIA Genomics Hub, University of Tennessee, Knoxville, TN 37996, USA
Trends Plant Sci 13:165-71. 2008..Applications of systems biology to plant science have been rapid, and have increased our knowledge about circadian rhythms, multigenic traits, stress responses and plant defenses, and have advanced the virtual plant project... - The endo-beta-mannanase gene families in Arabidopsis, rice, and poplarJoshua S Yuan
Department of Plant Sciences, University of Tennessee, 2431 Joe Johnson Drive, Knoxville, TN 37996, USA
Funct Integr Genomics 7:1-16. 2007.... - An Arabidopsis thaliana methyltransferase capable of methylating farnesoic acidYue Yang
Department of Molecular, Cellular and Developmental Biology, University of Michigan, 830 North University Street, Ann Arbor, MI 48109 1048, USA
Arch Biochem Biophys 448:123-32. 2006....