Research Topics
| Noboru SueokaSummaryAffiliation: University of Colorado Country: USA Publications
| Collaborators
|
Detail Information
Publications
Translation-coupled violation of Parity Rule 2 in human genes is not the cause of heterogeneity of the DNA G+C content of third codon positionN Sueoka
University of Colorado, Department of Molecular, Cellular, and Developmental Biology, Boulder 80309 0347, USA
Gene 238:53-8. 1999..Therefore, the heterogeneity of the G+C content is likely to be determined by some other mechanism (e.g. locally variable directional mutation pressures) than amino-acid-specific selections for the codon preference...- DNA G+C content of the third codon position and codon usage biases of human genesN Sueoka
University of Colorado, Department of Molecular, Cellular, and Developmental Biology, Boulder, CO 80309 0347, USA
Gene 261:53-62. 2000..These results support the notion that the directional mutation pressure, rather than the directional selection pressure, is mainly responsible for the heterogeneity of the G+C content of the third codon position... - Near homogeneity of PR2-bias fingerprints in the human genome and their implications in phylogenetic analysesN Sueoka
University of Colorado, Department of Molecular, Cellular, and Developmental Biology, Boulder, CO 80309 0347, USA
J Mol Evol 53:469-76. 2001..Potential advantages and disadvantages of the PR2-bias fingerprint analysis are discussed... - Wide intra-genomic G+C heterogeneity in human and chicken is mainly due to strand-symmetric directional mutation pressures: dGTP-oxidation and symmetric cytosine-deamination hypothesesNoboru Sueoka
Department of Molecular, Cellular, and Developmental Biology, University of Colorado, Boulder, CO 80309 0347, USA
Gene 300:141-54. 2002..This explains the existence of some preferred codons in human and chicken. However, these biases (asymmetric) hardly contribute to the overall G+C content diversity of the third codon position... - CodonExplorer: an online tool for analyzing codon usage and sequence composition, scaling from genes to genomesMicah Hamady
Department of Computer Science, University of Colorado, Boulder, CO 80309, USA
Bioinformatics 25:1331-2. 2009.... - Intra-strand biases in bacteriophage T4 genomeT Kano-Sueoka
University of Colorado, Department of Molecular, Cellular, and Developmental Biology, Boulder 80309 0347, USA
Gene 238:59-64. 1999.... - CodonExplorer: an interactive online database for the analysis of codon usage and sequence compositionJesse Zaneveld
Department of Molecular, Cellular, and Developmental Biology, University of Colorado, Boulder, CO, USA
Methods Mol Biol 537:207-32. 2009..CodonExplorer is thus a powerful tool that facilitates and automates a wide range of compositional analyses... - In vitro type II binding of chromosomal DNA to membrane in Bacillus subtilisY Sato
Department of Molecular, Cellular and Developmental Biology, University of Colorado, Boulder 80309 0347
J Bacteriol 173:7732-5. 1991..We found and sequenced two adjacent areas of type II binding within 1% of oriC on the B. subtilis chromosome... - Asymmetric directional mutation pressures in bacteriaJean R Lobry
Laboratoire BBE CNRS UMR 5558, Universite Claude Bernard, 43 Bd du 11 Novembre 1918, F 69622 Villeurbanne Cedex, France
Genome Biol 3:RESEARCH0058. 2002..By focusing on weakly selected regions that could be oriented with respect to replication in 43 out of 51 completely sequenced bacterial chromosomes, we have been able to detect asymmetric directional mutation pressures...