Jason E Stajich

Summary

Affiliation: University of California
Country: USA

Publications

  1. ncbi FungiDB: an integrated functional genomics database for fungi
    Jason E Stajich
    Department of Plant Pathology and Microbiology, University of California, Riverside, CA 92521, USA
    Nucleic Acids Res 40:D675-81. 2012
  2. ncbi Genome sequence of the necrotrophic plant pathogen Pythium ultimum reveals original pathogenicity mechanisms and effector repertoire
    C André Lévesque
    Agriculture and Agri Food Canada, 960 Carling Ave, Ottawa, ON, K1A 0C6, Canada
    Genome Biol 11:R73. 2010
  3. ncbi Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus)
    Jason E Stajich
    Department of Plant Pathology and Microbiology, University of California, Riverside, CA 92521, USA
    Proc Natl Acad Sci U S A 107:11889-94. 2010
  4. ncbi Comparative genomic analyses of the human fungal pathogens Coccidioides and their relatives
    Thomas J Sharpton
    Department of Plant and Microbial Biology, University of California, Berkeley, 94720, USA
    Genome Res 19:1722-31. 2009
  5. ncbi Estimating the tempo and mode of gene family evolution from comparative genomic data
    Matthew W Hahn
    Center for Population Biology, University of California, Davis, California 95616, USA
    Genome Res 15:1153-60. 2005
  6. ncbi Global gene expression profiles for life stages of the deadly amphibian pathogen Batrachochytrium dendrobatidis
    Erica Bree Rosenblum
    Departments of Molecular and Cell Biology, Howard Hughes Medical Institute, University of California, Berkeley, CA 94720, USA
    Proc Natl Acad Sci U S A 105:17034-9. 2008

Collaborators

Detail Information

Publications6

  1. ncbi FungiDB: an integrated functional genomics database for fungi
    Jason E Stajich
    Department of Plant Pathology and Microbiology, University of California, Riverside, CA 92521, USA
    Nucleic Acids Res 40:D675-81. 2012
    ..The underlying genomic sequence and annotation combined with functional data, additional data from the FungiDB standard analysis pipeline and the ability to leverage orthology provides a powerful resource for in silico experimentation...
  2. ncbi Genome sequence of the necrotrophic plant pathogen Pythium ultimum reveals original pathogenicity mechanisms and effector repertoire
    C André Lévesque
    Agriculture and Agri Food Canada, 960 Carling Ave, Ottawa, ON, K1A 0C6, Canada
    Genome Biol 11:R73. 2010
    ..Pythium ultimum is a ubiquitous oomycete plant pathogen responsible for a variety of diseases on a broad range of crop and ornamental species...
  3. ncbi Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus)
    Jason E Stajich
    Department of Plant Pathology and Microbiology, University of California, Riverside, CA 92521, USA
    Proc Natl Acad Sci U S A 107:11889-94. 2010
    ..The chromosome assembly of C. cinerea is an essential resource in understanding the evolution of multicellularity in the fungi...
  4. ncbi Comparative genomic analyses of the human fungal pathogens Coccidioides and their relatives
    Thomas J Sharpton
    Department of Plant and Microbial Biology, University of California, Berkeley, 94720, USA
    Genome Res 19:1722-31. 2009
    ....
  5. ncbi Estimating the tempo and mode of gene family evolution from comparative genomic data
    Matthew W Hahn
    Center for Population Biology, University of California, Davis, California 95616, USA
    Genome Res 15:1153-60. 2005
    ..We apply our method to data from the genomes of five yeast species to show its applicability...
  6. ncbi Global gene expression profiles for life stages of the deadly amphibian pathogen Batrachochytrium dendrobatidis
    Erica Bree Rosenblum
    Departments of Molecular and Cell Biology, Howard Hughes Medical Institute, University of California, Berkeley, CA 94720, USA
    Proc Natl Acad Sci U S A 105:17034-9. 2008
    ..Finally we discuss the challenges inherent in developing a molecular toolkit for chytrids, a basal fungal lineage separated by vast phylogenetic distance from other well characterized fungi...