C Rosse

Summary

Affiliation: University of Washington
Country: USA

Publications

  1. ncbi Relations in biomedical ontologies
    Barry Smith
    Institute for Formal Ontology and Medical Information Science, Saarland University, D 66041 Saarbrucken, Germany
    Genome Biol 6:R46. 2005
  2. ncbi A reference ontology for biomedical informatics: the Foundational Model of Anatomy
    Cornelius Rosse
    Departments of Biological Structure, and Medical Education and Biomedical Informatics, Structural Informatics Group, University of Washington, Seattle, WA 98195, USA
    J Biomed Inform 36:478-500. 2003
  3. ncbi Motivation and organizational principles for anatomical knowledge representation: the digital anatomist symbolic knowledge base
    C Rosse
    Department of Biological Structure, University of Washington, Seattle 98195, USA
    J Am Med Inform Assoc 5:17-40. 1998
  4. ncbi Terminologia anatomica: considered from the perspective of next-generation knowledge sources
    C Rosse
    Structural Informatics Group, Department of Biological Structure and Division of Biomedical Informatics, Department of Medical Education, School of Medicine, University of Washington, Seattle, Washington 98195, USA
    Clin Anat 14:120-33. 2001
  5. ncbi A relation-centric query engine for the Foundational Model of Anatomy
    Landon T Detwiler
    Structural Informatics Group, University of Washington, Seattle, WA 98195, USA
    Medinfo 11:341-5. 2004
  6. ncbi The Digital Anatomist distributed framework and its applications to knowledge-based medical imaging
    J F Brinkley
    Department of Biological Structure, University of Washington, Seattle 98195, USA
    J Am Med Inform Assoc 4:165-83. 1997
  7. ncbi Imaging and the Human Brain Project: a review
    J F Brinkley
    Structural Informatics Group, Department of Biological Structure, University of Washington, Seattle, USA
    Methods Inf Med 41:245-60. 2002
  8. ncbi Processes and problems in the formative evaluation of an interface to the Foundational Model of Anatomy knowledge base
    Linda G Shapiro
    Structural Informatics Group, Department of Medical Education and Biomedical Informatics, Box 352350, Computer Science and Engineering, 634 Paul Allen Center, University of Washington, Seattle, WA 98195, USA
    J Am Med Inform Assoc 12:35-46. 2005
  9. ncbi OQAFMA Querying agent for the Foundational Model of Anatomy: a prototype for providing flexible and efficient access to large semantic networks
    Peter Mork
    Department of Biological Structure, University of Washington, Seattle, WA 98195, USA
    J Biomed Inform 36:501-17. 2003
  10. ncbi The Virtual Anatomy Lab: a hands-on anatomy learning environment
    B Campbell
    University of Washington, USA
    Stud Health Technol Inform 81:85-7. 2001

Detail Information

Publications19

  1. ncbi Relations in biomedical ontologies
    Barry Smith
    Institute for Formal Ontology and Medical Information Science, Saarland University, D 66041 Saarbrucken, Germany
    Genome Biol 6:R46. 2005
    ..The resulting Relation Ontology can promote interoperability of ontologies and support new types of automated reasoning about the spatial and temporal dimensions of biological and medical phenomena...
  2. ncbi A reference ontology for biomedical informatics: the Foundational Model of Anatomy
    Cornelius Rosse
    Departments of Biological Structure, and Medical Education and Biomedical Informatics, Structural Informatics Group, University of Washington, Seattle, WA 98195, USA
    J Biomed Inform 36:478-500. 2003
    ....
  3. ncbi Motivation and organizational principles for anatomical knowledge representation: the digital anatomist symbolic knowledge base
    C Rosse
    Department of Biological Structure, University of Washington, Seattle 98195, USA
    J Am Med Inform Assoc 5:17-40. 1998
    ....
  4. ncbi Terminologia anatomica: considered from the perspective of next-generation knowledge sources
    C Rosse
    Structural Informatics Group, Department of Biological Structure and Division of Biomedical Informatics, Department of Medical Education, School of Medicine, University of Washington, Seattle, Washington 98195, USA
    Clin Anat 14:120-33. 2001
    ....
  5. ncbi A relation-centric query engine for the Foundational Model of Anatomy
    Landon T Detwiler
    Structural Informatics Group, University of Washington, Seattle, WA 98195, USA
    Medinfo 11:341-5. 2004
    ..Preliminary analysis suggests that Emily is capable of correctly processing real world anatomical queries provided they have been translated into a constrained form suitable for processing by the query engine...
  6. ncbi The Digital Anatomist distributed framework and its applications to knowledge-based medical imaging
    J F Brinkley
    Department of Biological Structure, University of Washington, Seattle 98195, USA
    J Am Med Inform Assoc 4:165-83. 1997
    ..We argue that this synergy will increase, not only within our own group, but also among groups as the Internet matures, and that an anatomic knowledge base will be a useful means for fostering these interactions...
  7. ncbi Imaging and the Human Brain Project: a review
    J F Brinkley
    Structural Informatics Group, Department of Biological Structure, University of Washington, Seattle, USA
    Methods Inf Med 41:245-60. 2002
    ..Survey current work primarily funded by the US Human Brain Project (HBP) that involves substantial use of images. Organize this work around a framework based on the physical organization of the body...
  8. ncbi Processes and problems in the formative evaluation of an interface to the Foundational Model of Anatomy knowledge base
    Linda G Shapiro
    Structural Informatics Group, Department of Medical Education and Biomedical Informatics, Box 352350, Computer Science and Engineering, 634 Paul Allen Center, University of Washington, Seattle, WA 98195, USA
    J Am Med Inform Assoc 12:35-46. 2005
    ..These results suggest that Emily will be a very useful tool, not only for evaluating the FMA, but also for querying and evaluating other large semantic networks...
  9. ncbi OQAFMA Querying agent for the Foundational Model of Anatomy: a prototype for providing flexible and efficient access to large semantic networks
    Peter Mork
    Department of Biological Structure, University of Washington, Seattle, WA 98195, USA
    J Biomed Inform 36:501-17. 2003
    ....
  10. ncbi The Virtual Anatomy Lab: a hands-on anatomy learning environment
    B Campbell
    University of Washington, USA
    Stud Health Technol Inform 81:85-7. 2001
    ..This paper introduces the Virtual Anatomy Lab software platform for coordinating on-line gross anatomy learning sessions over time...
  11. ncbi Problems and solutions with integrating terminologies into evolving knowledge bases
    Kurt L Rickard
    Structural Informatics Group, Department of Biological Structure, University of Washington, Seattle, WA 98195, USA
    Medinfo 11:420-4. 2004
    ..We describe the problems we have encountered and the solutions we have developed. We believe that both the problems and solutions generalize to the integration of any legacy terminology with a disciplined ontology within the same domain...
  12. ncbi Profile of on-line anatomy information resources: design and instructional implications
    S Kim
    Department of Medical Education and Informatics, University of Washington, Seattle, Washington 98195, USA
    Clin Anat 16:55-71. 2003
    ..Such a resource is a prerequisite for meaningful on-line anatomy education...
  13. ncbi Evolution of a Foundational Model of Physiology: symbolic representation for functional bioinformatics
    Daniel L Cook
    Structural Informatics Group, University of Washington, Seattle, WA, USA
    Stud Health Technol Inform 107:336-40. 2004
    ..We describe the evolving architecture of the FMP, which is based on the ontological principles of the BioD biological description language and the Foundational Model of Anatomy (FMA)...
  14. ncbi WIRM: an open source toolkit for building biomedical web applications
    Rex M Jakobovits
    Vivalog LLC, Seattle Washington 98122, USA
    J Am Med Inform Assoc 9:557-70. 2002
    ..WIRM's visual modeling tools enable domain experts to describe the structure of their knowledge, from which WIRM automatically generates full-featured, customizable content management systems...
  15. ncbi A formal theory for spatial representation and reasoning in biomedical ontologies
    Maureen Donnelly
    Department of Philosophy, New York State Center of Excellence in Bioinformatics and Life Sciences, University at Buffalo, 135 Park Hall, Buffalo, NY 14260, USA
    Artif Intell Med 36:1-27. 2006
    ....
  16. ncbi The role of foundational relations in the alignment of biomedical ontologies
    Barry Smith
    Institute for Formal Ontology and Medical Information Service, University of Leipzig, , 04107 Leipzig, Germany
    Medinfo 11:444-8. 2004
    ..We then illustrate how a consistently applied formal treatment of taxonomy and partonomy can support the alignment of ontologies...
  17. ncbi Anatomical evidence for the absence of a morphologically distinct cranial root of the accessory nerve in man
    Nirusha Lachman
    Department of Human Biology, Tecnikon Natal, Durban, South Africa
    Clin Anat 15:4-10. 2002
    ..Our findings indicate that the accessory nerve has no cranial root; it consists only of the structure hitherto referred to as its spinal root...
  18. ncbi Guideline and quality indicators for development, purchase and use of controlled health vocabularies
    Peter L Elkin
    Mayo Foundation for Medical Education and Research, 200 First St S W, Rochester, MN 55905, USA
    Int J Med Inform 68:175-86. 2002
    ....
  19. ncbi The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration
    Barry Smith
    Department of Philosophy and New York State Center of Excellence in Bioinformatics and Life Sciences, University at Buffalo, Buffalo, New York 14203, USA
    Nat Biotechnol 25:1251-5. 2007
    ..We describe this OBO Foundry initiative and provide guidelines for those who might wish to become involved...