Wuming Gong

Summary

Affiliation: University of Minnesota
Country: USA

Publications

  1. ncbi Integrated siRNA design based on surveying of features associated with high RNAi effectiveness
    Wuming Gong
    Department of Neuroscience, University of Minnesota, Minneapolis, MN 55455, USA
    BMC Bioinformatics 7:516. 2006
  2. ncbi siDRM: an effective and generally applicable online siRNA design tool
    Wuming Gong
    Department of Neuroscience, University of Minnesota, Minneapolis, MN 55455, USA
    Bioinformatics 24:2405-6. 2008
  3. ncbi siRecords: a database of mammalian RNAi experiments and efficacies
    Yongliang Ren
    Department of Neuroscience, University of Minnesota, Minneapolis, MN 55455, USA
    Nucleic Acids Res 37:D146-9. 2009
  4. ncbi siRecords: an extensive database of mammalian siRNAs with efficacy ratings
    Yongliang Ren
    Department of Neuroscience, University of Minnesota Minneapolis, MN 55455, USA
    Bioinformatics 22:1027-8. 2006
  5. ncbi PepCyber:P~PEP: a database of human protein protein interactions mediated by phosphoprotein-binding domains
    Wuming Gong
    Department of Neuroscience, University of Minnesota, Minneapolis, MN 55455, USA
    Nucleic Acids Res 36:D679-83. 2008
  6. ncbi Feedback regulation of NEUROG2 activity by MTGR1 is required for progression of neurogenesis
    Joshua D Aaker
    Department of Neuroscience and Stem Cell Institute, University of Minnesota, 6 145 Jackson Hall, 321 Church St SE, Minneapolis, MN 55455, USA
    Mol Cell Neurosci 42:267-77. 2009

Collaborators

  • Naoko Koyano-Nakagawa
  • Xiaolian Gao
  • Yongliang Ren
  • Tongbin Li
  • Joshua D Aaker
  • Yejun Wang
  • Feifei Xiao
  • Hyun Jin Yang
  • Steven C McLoon
  • David T Ewart
  • Haiyan Zhou
  • Andrea L Patineau
  • Yasushi Nakagawa
  • Dong Lin
  • Qiqi Xu
  • Xin Zheng

Detail Information

Publications6

  1. ncbi Integrated siRNA design based on surveying of features associated with high RNAi effectiveness
    Wuming Gong
    Department of Neuroscience, University of Minnesota, Minneapolis, MN 55455, USA
    BMC Bioinformatics 7:516. 2006
    ..The various existing siRNA design guidelines suffer from two problems: they differ considerably from each other, and they produce high levels of false-positive predictions when tested on data of independent origins...
  2. ncbi siDRM: an effective and generally applicable online siRNA design tool
    Wuming Gong
    Department of Neuroscience, University of Minnesota, Minneapolis, MN 55455, USA
    Bioinformatics 24:2405-6. 2008
    ..A performance comparison using an independent dataset indicated that siDRM outperforms 19 existing siRNA design tools in identifying effective siRNAs...
  3. ncbi siRecords: a database of mammalian RNAi experiments and efficacies
    Yongliang Ren
    Department of Neuroscience, University of Minnesota, Minneapolis, MN 55455, USA
    Nucleic Acids Res 37:D146-9. 2009
    ..The current release of siRecords contains the records of 17,192 RNAi experiments targeting 5086 genes...
  4. ncbi siRecords: an extensive database of mammalian siRNAs with efficacy ratings
    Yongliang Ren
    Department of Neuroscience, University of Minnesota Minneapolis, MN 55455, USA
    Bioinformatics 22:1027-8. 2006
    ..This database will continue to expand as more experimentally tested siRNAs are published. Availability: The siRecords database can be accessed at http://siRecords.umn.edu/siRecords/..
  5. ncbi PepCyber:P~PEP: a database of human protein protein interactions mediated by phosphoprotein-binding domains
    Wuming Gong
    Department of Neuroscience, University of Minnesota, Minneapolis, MN 55455, USA
    Nucleic Acids Res 36:D679-83. 2008
    ..PepCyber:P approximately PEP is accessible through the URL, http://www.pepcyber.org/PPEP/. The current release of the database contains 7044 PPBD-mediated interactions involving 337 PPBD-containing proteins and 1123 substrate proteins...
  6. ncbi Feedback regulation of NEUROG2 activity by MTGR1 is required for progression of neurogenesis
    Joshua D Aaker
    Department of Neuroscience and Stem Cell Institute, University of Minnesota, 6 145 Jackson Hall, 321 Church St SE, Minneapolis, MN 55455, USA
    Mol Cell Neurosci 42:267-77. 2009
    ..These results highlight the importance of feedback regulation of proneural gene activity in neurodevelopment...