Ferhat Ay

Summary

Affiliation: University of Florida
Country: USA

Publications

  1. ncbi A fast and accurate algorithm for comparative analysis of metabolic pathways
    Ferhat Ay
    Department of Computer Science and Engineering, University of Florida, Gainesville, FL 32611, USA
    J Bioinform Comput Biol 7:389-428. 2009
  2. ncbi Consistent alignment of metabolic pathways without abstraction
    Ferhat Ay
    Department of Computer Science and Engineering, University of Florida, Gainesville, FL 32611, USA
    Comput Syst Bioinformatics Conf 7:237-48. 2008
  3. ncbi Scalable steady state analysis of Boolean biological regulatory networks
    Ferhat Ay
    Computer and Information Science and Engineering, University of Florida, Gainesville, Florida, United States of America
    PLoS ONE 4:e7992. 2009
  4. ncbi SubMAP: aligning metabolic pathways with subnetwork mappings
    Ferhat Ay
    Computer and Information Science and Engineering, University of Florida, Gainesville, Florida, USA
    J Comput Biol 18:219-35. 2011

Detail Information

Publications4

  1. ncbi A fast and accurate algorithm for comparative analysis of metabolic pathways
    Ferhat Ay
    Department of Computer Science and Engineering, University of Florida, Gainesville, FL 32611, USA
    J Bioinform Comput Biol 7:389-428. 2009
    ..AVAILABILITY: Our software and the source code in C programming language is available at http://bioinformatics.cise.ufl.edu/pal.html...
  2. ncbi Consistent alignment of metabolic pathways without abstraction
    Ferhat Ay
    Department of Computer Science and Engineering, University of Florida, Gainesville, FL 32611, USA
    Comput Syst Bioinformatics Conf 7:237-48. 2008
    ..Our experiments show that, our method finds biologically and statistically significant alignments in the order of seconds for pathways with approximately 100 entities...
  3. ncbi Scalable steady state analysis of Boolean biological regulatory networks
    Ferhat Ay
    Computer and Information Science and Engineering, University of Florida, Gainesville, Florida, United States of America
    PLoS ONE 4:e7992. 2009
    ..Steady states of these networks determine the activity levels of individual entities in the long run. Identifying all the steady states of these networks is difficult due to the state space explosion problem...
  4. ncbi SubMAP: aligning metabolic pathways with subnetwork mappings
    Ferhat Ay
    Computer and Information Science and Engineering, University of Florida, Gainesville, Florida, USA
    J Comput Biol 18:219-35. 2011
    ..Implementation in C++ is available at http://bioinformatics.cise.ufl.edu/SubMAP.html...