Alexander S Yeh

Summary

Affiliation: The MITRE Corporation
Country: USA

Publications

  1. ncbi Overview of BioCreAtIvE task 1B: normalized gene lists
    Lynette Hirschman
    The MITRE Corporation, 202 Burlington Road, Bedford, MA 01730, USA
    BMC Bioinformatics 6:S11. 2005
  2. ncbi Overview of BioCreAtIvE: critical assessment of information extraction for biology
    Lynette Hirschman
    The MITRE Corporation, 202 Burlington Road, Bedford, MA 01730, USA
    BMC Bioinformatics 6:S1. 2005
  3. ncbi Evaluation of text data mining for database curation: lessons learned from the KDD Challenge Cup
    Alexander S Yeh
    The MITRE Corporation, 202 Burlington Road, Bedford, MA 01730, USA
    Bioinformatics 19:i331-9. 2003
  4. ncbi BioCreAtIvE task 1A: gene mention finding evaluation
    Alexander Yeh
    The MITRE Corporation, 202 Burlington Road, Bedford, MA 01730, USA
    BMC Bioinformatics 6:S2. 2005
  5. ncbi Gene name identification and normalization using a model organism database
    Alexander A Morgan
    MITRE Corporation, 202 Burlington Road, Mail Stop K325, Bedford, MA 01730 1420, USA
    J Biomed Inform 37:396-410. 2004
  6. ncbi Rutabaga by any other name: extracting biological names
    Lynette Hirschman
    The MITRE Corporation, MS K312, 202 Burlington Rd, Bedford, MA 01730, USA
    J Biomed Inform 35:247-59. 2002
  7. ncbi Data preparation and interannotator agreement: BioCreAtIvE task 1B
    Marc E Colosimo
    The MITRE Corporation, 202 Burlington Road, Bedford, MA 01730, USA
    BMC Bioinformatics 6:S12. 2005

Detail Information

Publications7

  1. ncbi Overview of BioCreAtIvE task 1B: normalized gene lists
    Lynette Hirschman
    The MITRE Corporation, 202 Burlington Road, Bedford, MA 01730, USA
    BMC Bioinformatics 6:S11. 2005
    ..The task was to produce the correct list of unique gene identifiers for the genes and gene products mentioned in sets of abstracts from three model organisms (Yeast, Fly, and Mouse)...
  2. ncbi Overview of BioCreAtIvE: critical assessment of information extraction for biology
    Lynette Hirschman
    The MITRE Corporation, 202 Burlington Road, Bedford, MA 01730, USA
    BMC Bioinformatics 6:S1. 2005
    ..The articles collected in this BMC Bioinformatics supplement entitled "A critical assessment of text mining methods in molecular biology" describe the BioCreAtIvE tasks, systems, results and their independent evaluation...
  3. ncbi Evaluation of text data mining for database curation: lessons learned from the KDD Challenge Cup
    Alexander S Yeh
    The MITRE Corporation, 202 Burlington Road, Bedford, MA 01730, USA
    Bioinformatics 19:i331-9. 2003
    ..We report on the evaluation results and describe the techniques used by the top performing groups...
  4. ncbi BioCreAtIvE task 1A: gene mention finding evaluation
    Alexander Yeh
    The MITRE Corporation, 202 Burlington Road, Bedford, MA 01730, USA
    BMC Bioinformatics 6:S2. 2005
    ..The task makes use of data and evaluation software provided by the (US) National Center for Biotechnology Information (NCBI)...
  5. ncbi Gene name identification and normalization using a model organism database
    Alexander A Morgan
    MITRE Corporation, 202 Burlington Road, Mail Stop K325, Bedford, MA 01730 1420, USA
    J Biomed Inform 37:396-410. 2004
    ....
  6. ncbi Rutabaga by any other name: extracting biological names
    Lynette Hirschman
    The MITRE Corporation, MS K312, 202 Burlington Rd, Bedford, MA 01730, USA
    J Biomed Inform 35:247-59. 2002
    ..We conclude by outlining a research agenda to raise performance of named entity tagging to a level where it can be used to perform tasks of biological importance...
  7. ncbi Data preparation and interannotator agreement: BioCreAtIvE task 1B
    Marc E Colosimo
    The MITRE Corporation, 202 Burlington Road, Bedford, MA 01730, USA
    BMC Bioinformatics 6:S12. 2005
    ..We did this by careful assessment of interannotator agreement and the use of answer pooling of participant results to improve the quality of the final testing dataset...