Research Topics
Genomes and Genes
| Xifeng WuSummaryAffiliation: The University of Texas Country: USA Publications
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Publications
A genome-wide association study identifies a novel susceptibility locus for renal cell carcinoma on 12p11.23Xifeng Wu
Department of Epidemiology, Division of Cancer Prevention and Population Sciences, The University of Texas M D Anderson Cancer Center, Houston, TX, USA
Hum Mol Genet 21:456-62. 2012..18 (95% CI: 1.12-1.25) for rs1049380. It has been recently identified that rs718314 in ITPR2 is associated with waist-hip ratio (WHR) phenotype. To our knowledge, this is the first genetic locus associated with both cancer risk and WHR...
A systematic approach to biomarker discovery; preamble to "the iSBTc-FDA taskforce on immunotherapy biomarkers"Lisa H Butterfield
Department of Medicine, Division of Hematology Oncology, University of Pittsburgh Cancer Institute, Pittsburgh, Pennsylvania, 15213, USA
J Transl Med 6:81. 2008..This foreword provides an overview of the task force and invites feedback from readers that might be incorporated in the discussions and in the final document...
Emerging concepts in biomarker discovery; the US-Japan Workshop on Immunological Molecular Markers in OncologyHideaki Tahara
Department of Surgery and Bioengineering, Advanced Clinical Research Center, Institute of Medical Science, The University of Tokyo, Tokyo, Japan
J Transl Med 7:45. 2009..The institution of an interactive consortium for high throughput molecular monitoring of clinical trials with voluntary participation might provide cost-effective solutions...
Genetic variation in DNA-repair pathways and response to radiochemotherapy in esophageal adenocarcinoma: a retrospective cohort study of the Eastern Cooperative Oncology GroupHarry H Yoon
Mayo Clinic, Rochester, MN 55905, USA
BMC Cancer 11:176. 2011..As a secondary aim, we investigated the rate of allelic imbalance between germline and tumor DNA...
Risk of urinary bladder cancer: a case-control analysis of industry and occupationAdrian Cassidy
Department of Epidemiology, The University of Texas MD Anderson Cancer Center, Houston, Texas, USA
BMC Cancer 9:443. 2009..Uncertainty remains about urinary bladder cancer (UBC) risk for many occupations. Here, we investigate the association between occupation, industry and UBC...
Telomere dysfunction: a potential cancer predisposition factorXifeng Wu
Department of Epidemiology, The University of Texas M D Anderson Cancer Center, Houston 77030, USA
J Natl Cancer Inst 95:1211-8. 2003..Genetic instability associated with telomere dysfunction (i.e., short telomeres) is an early event in tumorigenesis. We investigated the association between telomere length and cancer risk in four ongoing case-control studies...
Genetic polymorphism in bladder cancerXifeng Wu
Department of Epidemiology, The University of Texas M D Anderson Cancer Center, Houston, Texas 77030, USA
Front Biosci 12:192-213. 2007..This review presents an overview of current molecular epidemiology of bladder cancer and provides a useful resource for understanding the pathogenesis of bladder cancer...
Serum levels of insulin growth factor (IGF-I) and IGF-binding protein predict risk of second primary tumors in patients with head and neck cancerXifeng Wu
Department of Epidemiology, The University of Texas M D Anderson Cancer Center, Houston, Texas, USA
Clin Cancer Res 10:3988-95. 2004..Serum levels of insulin growth factors (IGFs) and their binding proteins (IGFBPs) have been associated with subsequent development of several epithelial cancers in prospective studies...
Pharmacogenetics in esophageal cancerXifeng Wu
Department of Epidemiology, The University of Texas M D Anderson Cancer Center, Houston, 77030, USA
Semin Oncol 32:S87-9. 2005..This emergent area of biomedicine could lead to substantially improved clinical outcomes for patients with adenocarcinoma or squamous cell carcinoma of the esophagus...
Germline genetic variations in drug action pathways predict clinical outcomes in advanced lung cancer treated with platinum-based chemotherapyXifeng Wu
Department of Epidemiology, The University of Texas M D Anderson Cancer Center, Houston, Texas, USA
Pharmacogenet Genomics 18:955-65. 2008..Therefore, we applied a pathway-based approach to evaluate the cumulative effect of multiple polymorphisms on clinical outcome of patients with non-small cell lung cancer...
Cell cycle checkpoints, DNA damage/repair, and lung cancer riskXifeng Wu
Department of Epidemiology, University of Texas M D Anderson Cancer Center, Houston, TX 77030, USA
Cancer Res 65:349-57. 2005..This study is significant because it provides the first molecular epidemiologic evidence linking defects in cell cycle checkpoints and DNA damage/repair capacity to elevated lung cancer risk...
Mutagen sensitivity: a genetic predisposition factor for cancerXifeng Wu
Department of Epidemiology, The University of Texas M D Anderson Cancer Center, 1155 Pressler Boulevard, Houston, TX 77030, USA
Cancer Res 67:3493-5. 2007..The evidence is becoming increasingly convincing that mutagen sensitivity is a risk factor for cancer development...
Bladder cancer predisposition: a multigenic approach to DNA-repair and cell-cycle-control genesXifeng Wu
Department of Epidemiology, The University of Texas M D Anderson Cancer Center, Houston, 77030, USA
Am J Hum Genet 78:464-79. 2006....
Projecting individualized probabilities of developing bladder cancer in white individualsXifeng Wu
Department of Epidemiology, The University of Texas M D Anderson Cancer Center, Houston, TX 77030, USA
J Clin Oncol 25:4974-81. 2007..There has been no risk assessment model for bladder cancer (BC). We developed the first model incorporating mutagen sensitivity and epidemiologic factors to predict BC risk...
Genome-wide association study of survival in non-small cell lung cancer patients receiving platinum-based chemotherapyXifeng Wu
Department of Epidemiology, The University of Texas MD Anderson Cancer Center, 1515 Holcombe Blvd, Unit 1340, Houston, TX 77030, USA
J Natl Cancer Inst 103:817-25. 2011..Interindividual variation in genetic background may influence the response to chemotherapy and overall survival for patients with advanced-stage non-small cell lung cancer (NSCLC)...
Joint effect of mutagen sensitivity and insulin-like growth factors in predicting the risk of developing secondary primary tumors and tumor recurrence in patients with head and neck cancerXifeng Wu
Department of Epidemiology, The University of Texas M D Anderson Cancer Center, Houston, Texas 77030, USA
Clin Cancer Res 12:7194-201. 2006..We hypothesized that latent genetic instability and proliferation potential may be associated with elevated risks of SPT and recurrence...
Interplay between mutagen sensitivity and epidemiological factors in modulatinglung cancer riskXifeng Wu
Department of Epidemiology, The University of Texas M D Anderson Cancer Center, Houston, TX 77030, USA
Int J Cancer 120:2687-95. 2007..This new integrative approach should facilitate identification of high-risk subgroups and has important implications in LC prevention...
Genetic susceptibility to tobacco-related cancerXifeng Wu
Department of Epidemiology, MD Anderson Cancer Center, Houston, TX 77030, USA
Oncogene 23:6500-23. 2004..Finally, we present a number of current concerns that need to be addressed as the exciting field of molecular cancer epidemiology advances rapidly...
Genome-wide association studies of bladder cancer risk: a field synopsis of progress and potential applicationsXifeng Wu
Department of Epidemiology, The University of Texas M D Anderson Cancer Center, 1155 Pressler Blvd, Houston, TX 77030, USA
Cancer Metastasis Rev 28:269-80. 2009..The ultimate goal is the development of a comprehensive risk prediction model which integrates genetic, environment, and person risk factors to benefit disease diagnosis, prevention, and treatment...
Genetic variations in radiation and chemotherapy drug action pathways predict clinical outcomes in esophageal cancerXifeng Wu
Department of Epidemiology, Experimental Therapeutics, GI Medical Oncology, The University of Texas M D Anderson Cancer Center, Houston, TX 77030, USA
J Clin Oncol 24:3789-98. 2006..Understanding how specific genetic variants modify drug action pathways may provide informative blueprints for individualized chemotherapy...
Mutagen sensitivity has high heritability: evidence from a twin studyXifeng Wu
Department of Epidemiology, The University of Texas M D Anderson Cancer Center, Houston, Texas 77030, USA
Cancer Res 66:5993-6. 2006..This study provides the strongest and most direct evidence that mutagen sensitivity is highly heritable, thereby validating the use of mutagen sensitivity as a cancer susceptibility factor...
Genetic variations in microRNA-related genes are associated with survival and recurrence in patients with renal cell carcinomaJie Lin
Department of Epidemiology, The University of Texas M D Anderson Cancer Center, Houston, TX 77030, USA
Carcinogenesis 31:1805-12. 2010..Future investigation in larger populations and functional characterizations are necessary to validate these results...
Genetic susceptibility to esophageal cancer: the role of the nucleotide excision repair pathwayJennifer Pan
Department of Epidemiology, University of Texas M D Anderson Cancer Center, Houston, TX 77030, USA
Carcinogenesis 30:785-92. 2009..These findings warrant further replications in different populations...
Nucleotide excision repair pathway genes and oral premalignant lesionsYunfei Wang
Department of Epidemiology, The University of Texas M D Anderson Cancer Center, Houston, Texas 77030, USA
Clin Cancer Res 13:3753-8. 2007..Polymorphisms in NER genes may cause variations in DNA repair capacity and increase susceptibility to both premalignant lesions and cancer...
Genetic variations in cell-cycle pathway and the risk of oral premalignant lesionsYuanqing Ye
Department of Epidemiology, The University of Texas M D Anderson Cancer Center, Houston, Texas 77030, USA
Cancer 113:2488-95. 2008..Cell-cycle checkpoint controls regulate cell-cycle progression and proliferation. Alterations in cell-cycle control mechanisms are linked to tumorigenesis...
Polymorphisms in inflammation genes and bladder cancer: from initiation to recurrence, progression, and survivalDan Leibovici
Department of Epidemiology, The University of Texas M D Anderson Cancer Center, 1155 Pressler Blvd, Houston, TX 77030, USA
J Clin Oncol 23:5746-56. 2005..Since chronic inflammation contributes to tumorigenesis, we hypothesized that the risk and clinical outcome of bladder cancer (BC) might be modulated by genetic variations in inflammation genes...
Mutagen sensitivity and genetic variants in nucleotide excision repair pathway: genotype-phenotype correlationJie Lin
Department of Epidemiology, Unit 1340, The University of Texas M D Anderson Cancer Center, 1155 Hermann Pressler Boulevard, Houston, TX 77030, USA
Cancer Epidemiol Biomarkers Prev 16:2065-71. 2007..As risk assessment for cancer risk is moving toward a multigenic pathway-based approach, future genotype-phenotype correlation studies should also investigate the combined effects of multiple genetic variants...
Nicotinic acetylcholine receptor region on chromosome 15q25 and lung cancer risk among African Americans: a case-control studyChristopher I Amos
Department of Epidemiology, University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA
J Natl Cancer Inst 102:1199-205. 2010..Thus, among African American persons, multiple loci in the region of chromosome 15q25.1 appear to be strongly associated with lung cancer risk...
Matrix metalloproteinase polymorphisms are associated with bladder cancer invasivenessA Karim Kader
Department of Epidemiology, The University of Texas M D Anderson Cancer Center, Houston, Texas 77030, USA
Clin Cancer Res 13:2614-20. 2007..MMP levels are elevated in bladder cancer patients correlating with more advanced stage. We tested whether polymorphisms in MMP genes modify the risk of bladder cancer invasiveness and whether smoke exposure modifies this risk...
Nucleotide excision repair gene polymorphisms and recurrence after treatment for superficial bladder cancerJian Gu
Department of Epidemiology, The University of Texas M D Anderson Cancer Center, Houston, TX 77030, USA
Clin Cancer Res 11:1408-15. 2005..Polymorphisms in NER genes may influence DNA repair capacity and affect clinical outcome of bladder cancer treatment...
Genetic variants in inflammation-related genes are associated with radiation-induced toxicity following treatment for non-small cell lung cancerMichelle A T Hildebrandt
Department of Epidemiology, The University of Texas MD Anderson Cancer Center, Houston, Texas, United States of America
PLoS ONE 5:e12402. 2010..These results suggest that genetic variations among inflammation pathway genes may modulate the development of radiation-induced toxicity and, ultimately, help in identifying patients who are at an increased likelihood for such events...
Mitochondrial DNA content: its genetic heritability and association with renal cell carcinomaJinliang Xing
Department of Epidemiology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA
J Natl Cancer Inst 100:1104-12. 2008..Renal cell carcinoma accounts for 85% of all renal cancers. No studies have investigated the association between mtDNA content and the risk of renal cell carcinoma...
Evaluation of glutathione S-transferase polymorphisms and mutagen sensitivity as risk factors for the development of second primary tumors in patients previously diagnosed with early-stage head and neck cancerCharles G Minard
Department of Epidemiology, The University of Texas M D Anderson Cancer Center, Houston, Texas 77030, USA
Cancer 106:2636-44. 2006..Data were available for 303 patients who were enrolled in a placebo-controlled chemoprevention trial of low-dose 13-cis-retinoic acid to reduce the occurrence of SPTs...
Genetic variation in MicroRNA genes and risk of oral premalignant lesionsJessica Clague
Department of Epidemiology, The University of Texas M D Anderson Cancer Center, Houston, Texas 77030, USA
Mol Carcinog 49:183-9. 2010....
Genetic variations of the PI3K-AKT-mTOR pathway and clinical outcome in muscle invasive and metastatic bladder cancer patientsMeng Chen
Department of Epidemiology, The University of Texas M D Anderson Cancer Center, Houston, 77030, USA
Carcinogenesis 31:1387-91. 2010..These findings warrant further replication in independent populations and may provide information on disease management and development of target therapies...
Combined effects of the p53 and p73 polymorphisms on lung cancer riskMatthew B Schabath
Department of Epidemiology, The University of Texas M D Anderson Cancer Center, Houston, TX 77230 1439, USA
Cancer Epidemiol Biomarkers Prev 15:158-61. 2006....
The influence of tumor necrosis factor-alpha -308 G/A and IL-6 -174 G/C on pain and analgesia response in lung cancer patients receiving supportive careCielito C Reyes-Gibby
Department of Epidemiology, Division of Cancer Prevention, The University of Texas M D Anderson Cancer Center, 1155 Pressler Street Unit 1340, Houston, TX 77030 4009, USA
Cancer Epidemiol Biomarkers Prev 17:3262-7. 2008....
Novel susceptibility loci for second primary tumors/recurrence in head and neck cancer patients: large-scale evaluation of genetic variantsXifeng Wu
Department of Epidemiology, The University of Texas M D Anderson Cancer Center, 1515 Holcombe Boulevard, Houston, TX 77030, USA
Cancer Prev Res (Phila) 2:617-24. 2009..Furthermore, this study underscores the importance of incorporating germ-line genetic variation data with clinical and risk factor data in constructing prediction models for clinical outcomes...
An expanded risk prediction model for lung cancerMargaret R Spitz
Department of Epidemiology, Unit 1340, The University of Texas M D Anderson Cancer Center, P O Box 301439, Houston, TX 77230 1439, USA
Cancer Prev Res (Phila) 1:250-4. 2008..Addition of biomarker assays improved the sensitivity of the expanded models...
Cyclin D1 guanine/adenine 870 polymorphism with altered protein expression is associated with genomic instability and aggressive clinical biology of esophageal adenocarcinomaJulie G Izzo
Department of Experimental Therapeutics, The University of Texas M D Anderson Cancer Center, Houston, TX 77030, USA
J Clin Oncol 25:698-707. 2007..We hypothesized that CD1 A870 allele would be associated with higher CD1 protein expression, and increased genomic instability during EAC evolution, leading to more aggressive phenotype...
Genetic variations in regulator of G-protein signaling genes as susceptibility loci for second primary tumor/recurrence in head and neck squamous cell carcinomaJianming Wang
Department of Epidemiology, The University of Texas M D Anderson Cancer Center, Houston, TX 77030, USA
Carcinogenesis 31:1755-61. 2010..Our results stressed the importance of taking a polygenic approach to evaluate the cumulative and interaction effects of genetic variations in the prediction of cancer risk and prognosis...
Genetic variations in PI3K-AKT-mTOR pathway and bladder cancer riskMeng Chen
Department of Epidemiology, The University of Texas M D Anderson Cancer Center, Houston, TX 77030, USA
Carcinogenesis 30:2047-52. 2009..71) increased bladder cancer risk. This is the first study to evaluate the role of germ line genetic variations in PI3K-AKT-mTOR pathway as cancer susceptibility factors that will help us identify high-risk individuals for bladder cancer...
High-order interactions among genetic polymorphisms in nucleotide excision repair pathway genes and smoking in modulating bladder cancer riskMeng Chen
Department of Epidemiology and Urology, The University of Texas M D Anderson Cancer Center, Houston, TX, USA
Carcinogenesis 28:2160-5. 2007..The contributions of these polymorphisms may jointly affect bladder cancer risk through gene-gene and gene-smoking interactions...
Global assessment of genetic variation influencing response to retinoid chemoprevention in head and neck cancer patientsJ Jack Lee
Department of Biostatistics, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA
Cancer Prev Res (Phila) 4:185-93. 2011..The lack of any alternatives for reducing risk in these patients highlights the need for future clinical trials to prospectively validate our findings...
PI3K/PTEN/AKT/mTOR pathway genetic variation predicts toxicity and distant progression in lung cancer patients receiving platinum-based chemotherapyXia Pu
Department of Epidemiology, The University of Texas M D Anderson Cancer Center, Houston, TX 77030, USA
Lung Cancer 71:82-8. 2011..With further validation, our findings may provide additional biomarkers for customized treatment of platinum-based chemotherapy for NSCLC...
From genotype to phenotype: correlating XRCC1 polymorphisms with mutagen sensitivityYunfei Wang
Department of Epidemiology, The University of Texas M D Anderson Cancer Center, Houston, TX 77030, USA
DNA Repair (Amst) 2:901-8. 2003..To our knowledge, this is the largest study conducted evaluating the functional relevance of these polymorphisms...
Genome-wide profiling of chromosomal alterations in renal cell carcinoma using high-density single nucleotide polymorphism arraysMeng Chen
Department of Epidemiology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA
Int J Cancer 125:2342-8. 2009..The identified regions and genes may become diagnostic and prognostic biomarkers as well as potential targets of therapy...
XPA polymorphism associated with reduced lung cancer risk and a modulating effect on nucleotide excision repair capacityXifeng Wu
Department of Epidemiology, The University of Texas M D Anderson Cancer Center, Houston, TX 77030, USA
Carcinogenesis 24:505-9. 2003..Our data suggest that the XPA 5' non-coding region polymorphism modulates NER capacity and is associated with decreased lung cancer risk, especially in the presence of exposure to tobacco carcinogens...
ATM sequence variants associate with susceptibility to non-small cell lung cancerHushan Yang
Department of Epidemiology, The University of Texas M D Anderson Cancer Center, Houston, TX
Int J Cancer 121:2254-9. 2007....
Genome-wide catalogue of chromosomal aberrations in barrett's esophagus and esophageal adenocarcinoma: a high-density single nucleotide polymorphism array analysisJian Gu
Department of Epidemiology, The University of Texas M D Anderson Cancer Center, Unit 1340, 1155 Pressler Boulevard, Houston, TX 77030, USA
Cancer Prev Res (Phila) 3:1176-86. 2010..8q24 (containing Myc) and 8p23.1 (containing CTSB) were the two most frequently amplified regions. In addition, a significant trend toward increasing amplification was associated with higher progression stage...
Genetic susceptibility to renal cell carcinoma: the role of DNA double-strand break repair pathwayVitaly Margulis
Department of Urology, The University of Texas M D Anderson Cancer Center, Houston, TX 77030, USA
Cancer Epidemiol Biomarkers Prev 17:2366-73. 2008..These findings require further validation in independent populations...
Genetic variants in cell cycle control pathway confer susceptibility to lung cancerWei Wang
Department of Epidemiology, The University of Texas M D Anderson Cancer Center, Houston, Texas 77030, USA
Clin Cancer Res 13:5974-81. 2007..To test the hypothesis that common sequence variants of cell cycle control genes may affect lung cancer predisposition...
Genetic polymorphisms in double-strand break DNA repair genes associated with risk of oral premalignant lesionsHushan Yang
Department of Epidemiology, The University of Texas M D Anderson Cancer Center, Unit 1340, 1515 Holcombe Blvd, Houston, TX 77030, USA
Eur J Cancer 44:1603-11. 2008..Our data also suggest that the effects of high-order interactions should be taken into consideration when evaluating OPL predisposition...
Polymorphisms in XPD exons 10 and 23 and bladder cancer riskMatthew B Schabath
Department of Epidemiology, University of Texas M D Anderson Cancer Center, Unit 189, 1515 Holcombe Boulevard, Houston, TX 77030, USA
Cancer Epidemiol Biomarkers Prev 14:878-84. 2005....
Cytokine genes and pain severity in lung cancer: exploring the influence of TNF-alpha-308 G/A IL6-174G/C and IL8-251T/ACielito C Reyes-Gibby
Department of Epidemiology, Division of Cancer Prevention, The University of Texas M D Anderson Cancer Center, Unit 1340, 1155 Pressler Street, Houston, TX 77030 4009, USA
Cancer Epidemiol Biomarkers Prev 16:2745-51. 2007..We explored if polymorphisms in candidate cytokine genes could explain variability in self-reported pain in lung cancer patients of all stages...
Genetic instability in bladder cancer assessed by the comet assayMatthew B Schabath
Department of Epidemiology, The University of Texas M. D. Anderson Cancer Center, Houston, TX 77030, USA
J Natl Cancer Inst 95:540-7. 2003..81, 95% CI = 1.04 to 3.14) but not after BPDE treatment (OR = 1.69, 95% CI = 0.98 to 2.93). CONCLUSION: Latent genetic instability as measured by the comet assay is associated with an increased estimated relative risk of bladder cancer...
Matrix metalloproteinase polymorphisms and bladder cancer riskA Karim Kader
Department of Epidemiology, The University of Texas M D Anderson Cancer Center, Houston, Texas 77030, USA
Cancer Res 66:11644-8. 2006..Heavy carcinogen exposure may overwhelm some of the genetic effects of MMP polymorphisms. Our study confirms the importance of taking a multigenic pathway-based approach to risk assessment...
High-order interactions among genetic variants in DNA base excision repair pathway genes and smoking in bladder cancer susceptibilityMaosheng Huang
Department of Epidemiology, The University of Texas M D Anderson Cancer Center, Unit 1340, 1155 Pressler Boulevard, Houston, TX 77030, USA
Cancer Epidemiol Biomarkers Prev 16:84-91. 2007..02%; P < 0.001). These results support the hypothesis that genetic variants in BER genes contribute to bladder cancer risk through gene-gene and gene-environmental interactions...
A risk model for prediction of lung cancerMargaret R Spitz
Department of Epidemiology Unit 1340, The University of Texas M D Anderson Cancer Center, PO Box 301439, Houston, TX 77230 1439, USA
J Natl Cancer Inst 99:715-26. 2007..Reliable risk prediction tools for estimating individual probability of lung cancer have important public health implications. We constructed and validated a comprehensive clinical tool for lung cancer risk prediction by smoking status...
p53 Genotypes and Haplotypes Associated With Lung Cancer Susceptibility and EthnicityXifeng Wu
Department of Epidemiology, The University of Texas M D Anderson Cancer Center, Houston, 77030, USA
J Natl Cancer Inst 94:681-90. 2002..We also examined the functionality of the p53 variants in apoptosis and DNA repair...
Family history and risk of renal cell carcinoma: results from a case-control study and systematic meta-analysisJessica Clague
Department of Epidemiology, Box 1340, The University of Texas M D Anderson Cancer Center, 1155 Pressler Street, Houston, TX 77030, USA
Cancer Epidemiol Biomarkers Prev 18:801-7. 2009....
Moving toward individualized therapy based on NER polymorphisms that predict platinum sensitivity in ovarian cancer patientsJ Salvador Saldivar
Department of Gynecology Oncology, The University of Texas M D Anderson Cancer Center, Houston, TX, USA
Gynecol Oncol 107:S223-9. 2007..We hypothesized that genetic polymorphisms in XP genes may predict clinical response to platinum chemotherapeutic treatment and survival in women with gynecological cancers...
Case-control analysis of dietary folate and risk of bladder cancerMatthew B Schabath
The University of Texas M. D. Anderson Cancer Center, Houston, TX 77030, USA
Nutr Cancer 53:144-51. 2005..These data may have important implications for cancer prevention; however, large, hypothesis-driven, population-based clinical trials will be required to confirm these findings...
Dietary carotenoids and genetic instability modify bladder cancer riskMatthew B Schabath
Department of Epidemiology, The University of Texas M. D. Anderson Cancer Center, Houston, TX, USA
J Nutr 134:3362-9. 2004..18; 95% CI, 1.13-4.22). This study provides evidence of a preventive role for carotenoids in bladder cancer, and these data may have important implications for cancer prevention, especially for individuals susceptible to DNA damage...
Dietary isothiocyanates, GSTM1, GSTT1, NAT2 polymorphisms and bladder cancer riskHua Zhao
Department of Epidemiology, The University of Texas M D Anderson Cancer Center, 1155 Hermann Pressler Boulevard, Houston, TX 77030, USA
Int J Cancer 120:2208-13. 2007..The protective effect of ITCs against bladder cancer was not modified by GSTM1, GSTT1 or NAT2 genotypes. This is the first epidemiological report that ITCs from cruciferous vegetable consumption protect against bladder cancer...
MicroRNA-related genetic variations as predictors for risk of second primary tumor and/or recurrence in patients with early-stage head and neck cancerXiaofan Zhang
Department of Epidemiology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA
Carcinogenesis 31:2118-23. 2010..9 months (log rank P = 2.28 × 10(-13)). Our results suggested that miRNA-related genetic polymorphisms may be used individually and jointly to predict the risk of SPT/recurrence of early-stage head and neck cancer patients...
Single nucleotide polymorphisms of microRNA machinery genes modify the risk of renal cell carcinomaYohei Horikawa
Department of Epidemiology, The University of Texas M D Anderson Cancer Center, Houston, Texas 77030, USA
Clin Cancer Res 14:7956-62. 2008..Compelling evidence has shown that miRNAs are involved in cancer initiation and progression. We hypothesized that genetic variations of the miRNA machinery genes could be associated with the risk of renal cell carcinoma...
Sensitivity to NNKOAc is associated with renal cancer riskJessica Clague
Department of Epidemiology, University of Texas M D Anderson Cancer Center, 1155 Pressler, Unit 1340, Houston, TX 77030, USA
Carcinogenesis 30:706-10. 2009..Future studies with larger sample sizes are warranted to further investigate whether repair of NNKOAc-induced damage, as quantified by the comet assay, could be used as a predictive marker for RCC risk...
A nonsynonymous single-nucleotide polymorphism in the PDZ-Rho guanine nucleotide exchange factor (Ser1416Gly) modulates the risk of lung cancer in Mexican AmericansJian Gu
Department of Epidemiology, The University of Texas M D Anderson Cancer Center, Houston, Texas, USA
Cancer 106:2716-24. 2006..Recently, the authors reported that 3 single-nucleotide polymorphisms (SNPs) in 2 members of the RGS family were associated with significant reductions in the risk of cancer...
Differential induction in telomerase activity among bladder cancer patients and controls on gamma-radiationJinliang Xing
Department of Epidemiology, The University of Texas M D Anderson Cancer Center, Unit 1304, 1155 Pressler Boulevard, Houston, TX 77030, USA
Cancer Epidemiol Biomarkers Prev 16:606-9. 2007..Our findings provide the first evidence linking the mutagen-induced telomerase activity in peripheral blood lymphocytes to the risk of bladder cancer, which warrants further investigation in large-sized studies and other cancer types...
Association between asbestos exposure, cigarette smoking, myeloperoxidase (MPO) genotypes, and lung cancer riskMatthew B Schabath
Department of Epidemiology, The University of Texas M D Anderson Cancer Center, Holcombe Blvd, Houston, Texas 77303, USA
Am J Ind Med 42:29-37. 2002..As observed in tobacco-associated carcinogenesis, genetic factors such as the polymorphic metabolic/oxidative enzyme myeloperoxidase (MPO) could modulate individual susceptibility to asbestos-associated carcinogenesis...
Assessment of insulin-like growth factors and mutagen sensitivity as predictors of lung cancer riskXifeng Wu
Department of Epidemiology, University of Texas M. D. Anderson Cancer Center, Houston, TX, USA
Methods Mol Med 75:279-87. 2003
Association between glutathione S-transferase p1 polymorphisms and lung cancer risk in Caucasians: a case-control studyYunfei Wang
Department of Epidemiology, The University of Texas M D Anderson Cancer Center, Box 189, 1515 Holcombe Boulevard, Houston, TX 77030, USA
Lung Cancer 40:25-32. 2003..53; 95% CI 0.21-1.33). These data demonstrate that the GSTP1 exon 6 polymorphism, but not the exon 5 polymorphism, is associated with lung cancer risk that is especially evident in men, younger individuals, and ever smokers...
An association between NQO1 genetic polymorphism and risk of bladder cancerSeun Ja Park
Department of Epidemiology, Unit 189, The University of Texas, M D Anderson Cancer Center, 1515 Holcombe Blvd, Houston, TX 77030, USA
Mutat Res 536:131-7. 2003..78; 95% CI=1.06-3.00), but not in never smokers (OR=1.19; 95% CI=0.65-2.20). These results suggest that the NQO1 genetic polymorphism modulates bladder cancer risk, especially in men and ever smokers...
An evolutionary perspective on single-nucleotide polymorphism screening in molecular cancer epidemiologyYong Zhu
Department of Epidemiology, The University of Texas M. D. Anderson Cancer Center, 1515 Holcombe Boulevard, Houston, TX 77030, USA
Cancer Res 64:2251-7. 2004..Using such a molecular evolutionary approach may hold great promise for prioritizing SNPs to be genotyped in future molecular epidemiological studies...
Predictors of esophageal cancer risk: assessment of susceptibility to DNA damage using comet assayLina Shao
Department of Epidemiology, University of Texas M. D. Anderson Cancer Center, Houston, TX 77030, USA
Genes Chromosomes Cancer 44:415-22. 2005..4-fold risk for EC and those sensitive to both mutagens showed an 8.7-fold risk for EC. Thus, we conclude that susceptibility to DNA damage as assessed by comet assay might help identify individuals with high EC risk...
Sensitivity to epidermal growth factor receptor inhibitor requires E-cadherin expression in urothelial carcinoma cellsPeter C Black
Department of Urology, The University of Texas M D Anderson Cancer Center, Houston, Texas 77030, USA
Clin Cancer Res 14:1478-86. 2008..The aim of this study was to define molecular markers of response to cetuximab therapy in a panel of urothelial carcinoma cell lines...
Telomere dysfunction in peripheral lymphocytes as a potential predisposition factor for renal cancerLina Shao
Department of Epidemiology, University of Texas M D Anderson Cancer Center, Houston, Texas 77030, USA
J Urol 178:1492-6. 2007..In this study we modified the assay by incorporating 9 control cell lines to normalize telomere length...
BPDE-induced lymphocytic 3p21.3 aberrations may predict head and neck carcinoma riskYong Zhu
Department of Epidemiology, The University of Texas M. D. Anderson Cancer Center, 1515 Holcombe Boulevard, Houston, TX 77030, USA
Cancer 95:563-8. 2002..CONCLUSIONS: The results from this study demonstrated that 3p21.3 may be a specific molecular target of tobacco carcinogens and that BPDE sensitivity at this locus may reflect an individual's genetic susceptibility to HNSCC...
Opposing effects of emphysema, hay fever, and select genetic variants on lung cancer riskMatthew B Schabath
Department of Epidemiology, The University of Texas M D Anderson Cancer Center, Houston, TX 77030, USA
Am J Epidemiol 161:412-22. 2005..19, 0.66) protective genotypes as compared with none (OR = 0.69, 95% CI: 0.30, 1.59). The biologic role of respiratory disease in lung cancer is unclear. Further study may yield new insights for identification of susceptible subgroups...
Mediating effects of smoking and chronic obstructive pulmonary disease on the relation between the CHRNA5-A3 genetic locus and lung cancer riskJian Wang
Department of Epidemiology, The University of Texas M D Anderson Cancer Center, Houston, Texas
Cancer 116:3458-62. 2010..However, it has not been established whether the association between genetic variants and lung cancer risk is a direct one or one mediated by nicotine dependence...
Modification of lung cancer susceptibility by green tea extract as measured by the comet assayHuifeng Zhang
Department of Epidemiology, The University of Texas M.D. Anderson Cancer Center Box 189 1515 Holcombe Blvd, Houston, TX 77030, USA
Cancer Detect Prev 26:411-8. 2002..This reports also demonstrated the chemopreventive effects of green tea extract on BPDE-induced DNA damage. These observations provide further support for the application of the comet assay in molecular epidemiologic studies...
A case-control analysis of lymphocytic chromosome 9 aberrations in lung cancerYong Zhu
Department of Epidemiology, The University of Texas M.D. Anderson Cancer Center, Houston, TX, USA
Int J Cancer 102:536-40. 2002..67 [0.84, 3.32]) and lung cancer (OR = 2.49 [0.81, 7.67]). Our findings suggest that chromosome 9 aberrations in PBLs might be considered a marker of lung cancer predisposition and may be associated with familial aggregation of cancer...
A myeloperoxidase polymorphism associated with reduced risk of lung cancerMatthew B Schabath
Department of Epidemiology, The University of Texas M D Anderson Cancer Center, Box 189, 1515 Holcombe Blvd, Houston, TX 77030, USA
Lung Cancer 37:35-40. 2002..This report provides further support for the hypothesis that a single nucleotide polymorphism in the MPO gene is a protective factor in lung cancer carcinogenesis...
Hormone replacement therapy and lung cancer risk: a case-control analysisMatthew B Schabath
Department of Epidemiology, The University of Texas M. D. Anderson Cancer Center, Houston, Texas, USA
Clin Cancer Res 10:113-23. 2004..The biological role of HRT in lung cancer remains understudied, and only extensive research can yield new insights into the mechanisms underlying a protective effect of HRT for lung cancer...
Methyl-CpG-binding domain 2: a protective role in bladder carcinomaYong Zhu
Department of Epidemiology, The University of Texas M D Anderson Cancer Center, Houston, Texas 77030, USA
Cancer 100:1853-8. 2004..In the current case-control study, the authors investigated the association between MBD2 expression and bladder carcinoma risk...
Polymorphisms of STK15 (Aurora-A) gene and lung cancer risk in CaucasiansJian Gu
Department of Epidemiology, The University of Texas M D Anderson Cancer Center Houston, TX 77030, USA
Carcinogenesis 28:350-5. 2007..45% of controls) exhibited a reduced lung cancer risk (OR=0.78, 95% CI=0.63-0.97). This is the first epidemiological study to report significant associations between STK15 polymorphisms and lung cancer risk...
Genotypes, haplotypes and diplotypes of XPC and risk of bladder cancerYimin Zhu
Department of Epidemiology, The University of Texas M D Anderson Cancer Center, Houston, TX 77030, USA
Carcinogenesis 28:698-703. 2007..53 (0.34-0.82) for C-A/T-A, 0.48 (0.27-0.84) for C-A/C-C, 0.18 (0.053-0.60) for C-C/C-C and 0.57 (0.36-0.90) for C+C/C+C. These results suggest that sequence variants in the XPC gene might modulate the risk of bladder cancer...
Genetic variants in cell cycle control pathway confer susceptibility to bladder cancerYuanqing Ye
Department of Epidemiology, The University of Texas M D Anderson Cancer Center, Houston, TX 77030, USA
Cancer 112:2467-74. 2008..Cell cycle checkpoint regulation is crucial for the prevention of carcinogenesis in mammalian cells...
Mutagen-induced chromatid breakage as a marker of cancer riskXifeng Wu
Department of Epidemiology, M.D. Anderson Cancer Center, Houston, TX, USA
Methods Mol Biol 291:59-67. 2005....
Modulation of DNA damage/DNA repair capacity by XPC polymorphismsYimin Zhu
Department of Epidemiology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA
DNA Repair (Amst) 7:141-8. 2008..16, P=0.0009). The haplotypes "T-A" (in the order of Ala499Val-PAT-Lys939Gln) was associated with the lowest DNA damages. Our results suggested that the DRC of host cells might be modulated by specific XPC polymorphisms...
A modified host cell reactivation assay to measure DNA repair capacity for removing 4-aminobiphenyl adducts: a pilot study of bladder cancerJie Lin
Department of Epidemiology, University of Texas M.D. Anderson Cancer Center, Unit 1340, 1155 Hermann Pressler Boulevard, Houston, TX 77030, USA
Cancer Epidemiol Biomarkers Prev 14:1832-6. 2005..Our assay provides a new tool to specifically quantify DNA repair capacity in bladder cancer studies and, therefore, contributes to our goal of further elucidating bladder carcinogenesis...
Death receptor 4 and bladder cancer riskAditi Hazra
Department of Epidemiology, The University of Texas M D Anderson Cancer Center, Houston, Texas 77030, USA
Cancer Res 63:1157-9. 2003....
Cyclin D1 gene polymorphism as a risk factor for oral premalignant lesionsMaosheng Huang
Department of Epidemiology, The University of Texas M D Anderson Cancer Center, Houston, TX 77030, USA
Carcinogenesis 27:2034-7. 2006..Deregulation of cell cycle plays an important role in tumorigenesis. Cyclin D1 gene (CCND1) is a key regulator of the G(1) phase of the cell cycle...
Deficiency of cell cycle checkpoints and DNA repair system predispose individuals to esophageal cancerLina Shao
Department of Epidemiology, University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA
Mutat Res 602:143-50. 2006..However, such association was not seen in esophageal cancer patients. This study provides the first molecular epidemiologic evidence linking increased esophageal cancer risk with defects in cell-cycle checkpoints and DNA repair capacity...
Genetic variations in microRNA-related genes are novel susceptibility loci for esophageal cancer riskYuanqing Ye
Department of Epidemiology, The University of Texas MD Anderson Cancer Center, Houston, Texas 77030, USA
Cancer Prev Res (Phila) 1:460-9. 2008..The present study provides the first evidence that miRNAs may affect esophageal cancer risk in general and that specific genetic variants in miRNA-related genes may affect esophageal cancer risk individually and jointly...
Sulfotransferase (SULT) 1A1 polymorphism as a predisposition factor for lung cancer: a case-control analysisYunfei Wang
Department of Epidemiology, The University of Texas, M D Anderson Cancer Center, Box 189, 1515 Holcombe Blvd, Houston, TX 77030, USA
Lung Cancer 35:137-42. 2002..74, 95% CI: 1.08-2.29) and heavy smokers (OR=1.45, 95% CI: 1.05-2.00). Our results support the hypothesis that a genetic polymorphism in the SULT1A1 gene may be associated with increased lung cancer risk...
MicroRNA expression signatures in Barrett's esophagus and esophageal adenocarcinomaHushan Yang
Department of Epidemiology, The University of Texas M D Anderson Cancer Center, Houston, Texas 77030, USA
Clin Cancer Res 15:5744-52. 2009..Although microRNA (miRNA) expression signatures have been associated with the etiology and prognosis of several types of cancers, their roles in the development of esophageal adenocarcinoma have not been extensively evaluated...
The D2 dopamine receptor gene and nicotine dependence among bladder cancer patients and controlsJessica Clague
Department of Epidemiology, Unit 1340, The University of Texas M D Anderson Cancer Center, 1155 Pressler Blvd Unit 1340, Houston, TX 77030, USA
Behav Genet 40:49-58. 2010..01). The present study suggests that the DRD2 alleles A1 and B1 confer greater vulnerability to tobacco use...
Case-control analysis of nucleotide excision repair pathway and the risk of renal cell carcinomaJie Lin
Department of Epidemiology, University of Texas M D Anderson Cancer Center, Houston, TX 77030, USA
Carcinogenesis 29:2112-9. 2008..These results need to be replicated in larger studies...
Polymorphisms of folate metabolic genes and susceptibility to bladder cancer: a case-control studyJie Lin
Department of Epidemiology, The University of Texas M D Anderson Cancer Center, 1515 Holcombe Blvd, Houston, TX 77030, USA
Carcinogenesis 25:1639-47. 2004..These results have important implications for cancer prevention in susceptible populations...
Research Grants
- Markers of Genetic Susceptibility to Bladder CancerXifeng Wu; Fiscal Year: 2007..The ability to rapidly screen individuals for risk, using minimally invasive procedures (blood samples), has immense clinical implication, such as intensive screening and chemopreventive interventions. ..
- Genetic Susceptibility Modifiers in Renal Cell CarcinomaXifeng Wu; Fiscal Year: 2007..Such individuals may then be targeted for intervention programs such as chemoprevention or dietary modification. ..
- Lung Cancer Chemoradiation: Predictors of SurvivalXifeng Wu; Fiscal Year: 2007..This multivariate prognostic study could have long-term prognostic potential by allowing greater individualization of therapy, based on the genetic makeup of the patient, thereby both increasing efficacy and reducing morbidity. ..
- Genetic Instability & Risk for Esophageal CarcinomaXifeng Wu; Fiscal Year: 2009..The ability to identify high-risk subgroups of individuals for EAC will provide immense public health benefit for those high-risk people who may be subjected to close surveillance and chemoprevention. ..
- Genetic Instability & Risk for Esophageal CarcinomaXifeng Wu; Fiscal Year: 2010..The ability to rapidly screen individuals for risk, using minimally invasive procedures (blood samples), has immense clinical implication, such as intensive screening and chemopreventive interventions. ..
- GENETIC SUSCEPTIBILITY TO BLADDER CANCERXifeng Wu; Fiscal Year: 2003..Our long-term plan is to refine our risk assessment in patients with BC so that we can identify high-risk subgroups of candidates for primary and secondary prevention measures. ..
- GENETIC INFLUENCE ON MUTAGEN SENSITIVITY--A TWIN STUDYXifeng Wu; Fiscal Year: 2004..Additionally, these potential biomarkers may ultimately be used to identify individuals who should be targeted for more intense screening programs or behavior modification interventions. ..
- Lung Cancer Chemoradiation: Predictors of SurvivalXifeng Wu; Fiscal Year: 2009..This multivariate prognostic study could have long-term prognostic potential by allowing greater individualization of therapy, based on the genetic makeup of the patient, thereby both increasing efficacy and reducing morbidity. ..
