W C Ray

Summary

Affiliation: The Ohio State University
Country: USA

Publications

  1. ncbi The PACRAT system: an extensible WWW-based system for correlated sequence retrieval, storage and analysis
    W C Ray
    Biophysics Program and Department of Microbiology, The Ohio State University, Columbus, OH 43210, USA
    Bioinformatics 17:100-4. 2001
  2. ncbi MAVL/StickWRLD for protein: visualizing protein sequence families to detect non-consensus features
    William C Ray
    Children s Research Institute and The Department of Pediatrics, The Ohio State University, 700 Children s Drive, Columbus, OH 43205, USA
    Nucleic Acids Res 33:W315-9. 2005
  3. ncbi MAVL and StickWRLD: visually exploring relationships in nucleic acid sequence alignments
    William C Ray
    Children s Research Institute and The Department of Pediatrics, The Ohio State University, 700 Children s Drive, W531, Columbus, OH 43205, USA
    Nucleic Acids Res 32:W59-63. 2004
  4. ncbi Tricross : using dot-plots in sequence-id space to detect uncataloged intergenic features
    W C Ray
    Children s Research Institute, The Ohio State University, 700 Childrens Dr, Columbus, OH 43205, USA
    Bioinformatics 17:1105-12. 2001
  5. ncbi MAVL/StickWRLD: analyzing structural constraints using interpositional dependencies in biomolecular sequence alignments
    Hatice Gulcin Ozer
    Biophysics Graduate Program, The Ohio State University, 700 Children's Drive, Columbus, OH 43205, USA
    Nucleic Acids Res 34:W133-6. 2006
  6. ncbi Haemophilus ducreyi strain ATCC 27722 contains a genetic element with homology to the vibrio RS1 element that can replicate as a plasmid and confer NAD independence on haemophilus influenzae
    Robert S Munson
    Division of Molecular Medicine, Children s Research Institute, and Department of Pediatrics, The Ohio State University, Columbus, Ohio 43205, USA
    Infect Immun 72:1143-6. 2004
  7. ncbi Partial analysis of the genomes of two nontypeable Haemophilus influenzae otitis media isolates
    Robert S Munson
    Center for Microbial Pathogenesis, Columbus Children s Research Institute and The Department of Pediatrics, The Ohio State University, Columbus, Ohio 43205, USA
    Infect Immun 72:3002-10. 2004
  8. ncbi Genomic sequence of an otitis media isolate of nontypeable Haemophilus influenzae: comparative study with H. influenzae serotype d, strain KW20
    Alistair Harrison
    Center for Microbial Pathogenesis, Columbus Children's Research Institute, Ohio State University College of Medicine and Public Health, Columbus, Ohio 43205, USA
    J Bacteriol 187:4627-36. 2005
  9. ncbi The OxyR regulon in nontypeable Haemophilus influenzae
    Alistair Harrison
    Columbus Children s Research Institute, Center for Microbial Pathogenesis, The Ohio State University College of Medicine and Public Health, 700 Children s Drive, Columbus, OH 43205 2696, USA
    J Bacteriol 189:1004-12. 2007
  10. ncbi PACRAT: a database and analysis system for archaeal and bacterial intergenic sequence features
    William C Ray
    Children s Research Institute and The Department of Pediatrics, The Ohio State University, 700 Children s Drive, Columbus, OH 43205, USA
    Nucleic Acids Res 31:109-13. 2003

Collaborators

  • Robert S Munson
  • L O Bakaletz
  • BRADFORD WAYNE GIBSON
  • Alistair Harrison
  • Glen McGillivary
  • Hatice Gulcin Ozer
  • N Karoline Scheffler
  • Charles L Bevins
  • David W Armbruster
  • Beth D Baker
  • Linda S Johnson
  • Mandy Gipson
  • Matthew B Carson
  • Allison Gillaspy
  • David W Dyer
  • Lisa Lewis
  • Jenny Gipson
  • Rachna Mungur
  • Huachun Zhong
  • Arnold M Falick
  • Steven C Hall
  • Deborah M Post

Detail Information

Publications12

  1. ncbi The PACRAT system: an extensible WWW-based system for correlated sequence retrieval, storage and analysis
    W C Ray
    Biophysics Program and Department of Microbiology, The Ohio State University, Columbus, OH 43210, USA
    Bioinformatics 17:100-4. 2001
    ..An unexpected additional benefit of the system is that it also provides easy access to sequences of lower confidence, and may be of assistance in such things as resolving ORF-call conflicts in genomic annotation projects...
  2. ncbi MAVL/StickWRLD for protein: visualizing protein sequence families to detect non-consensus features
    William C Ray
    Children s Research Institute and The Department of Pediatrics, The Ohio State University, 700 Children s Drive, Columbus, OH 43205, USA
    Nucleic Acids Res 33:W315-9. 2005
    ..MAVL/StickWRLD can be accessed at http://www.microbial-pathogenesis.org/stickwrld/...
  3. ncbi MAVL and StickWRLD: visually exploring relationships in nucleic acid sequence alignments
    William C Ray
    Children s Research Institute and The Department of Pediatrics, The Ohio State University, 700 Children s Drive, W531, Columbus, OH 43205, USA
    Nucleic Acids Res 32:W59-63. 2004
    ..microbial-pathogenesis.org/stickwrld/tutorial/sticktut2.html. This tutorial is quite large; please be patient while it loads...
  4. ncbi Tricross : using dot-plots in sequence-id space to detect uncataloged intergenic features
    W C Ray
    Children s Research Institute, The Ohio State University, 700 Childrens Dr, Columbus, OH 43205, USA
    Bioinformatics 17:1105-12. 2001
    ..The software can also be applied to a pair of sequence sets, though the noise in the results increases...
  5. ncbi MAVL/StickWRLD: analyzing structural constraints using interpositional dependencies in biomolecular sequence alignments
    Hatice Gulcin Ozer
    Biophysics Graduate Program, The Ohio State University, 700 Children's Drive, Columbus, OH 43205, USA
    Nucleic Acids Res 34:W133-6. 2006
    ..The Java StickWRLD applet is available via the WWW at http://www.microbial-pathogenesis.org/stickwrld/...
  6. ncbi Haemophilus ducreyi strain ATCC 27722 contains a genetic element with homology to the vibrio RS1 element that can replicate as a plasmid and confer NAD independence on haemophilus influenzae
    Robert S Munson
    Division of Molecular Medicine, Children s Research Institute, and Department of Pediatrics, The Ohio State University, Columbus, Ohio 43205, USA
    Infect Immun 72:1143-6. 2004
    ..Tandem copies of the plasmid are integrated into the H. ducreyi 35000HP genome...
  7. ncbi Partial analysis of the genomes of two nontypeable Haemophilus influenzae otitis media isolates
    Robert S Munson
    Center for Microbial Pathogenesis, Columbus Children s Research Institute and The Department of Pediatrics, The Ohio State University, Columbus, Ohio 43205, USA
    Infect Immun 72:3002-10. 2004
    ..We also identified a number of putative restriction-modification systems, bacteriophage genes and transposon-related genes. These data provide new insight that complements and extends our ongoing analysis of NTHI virulence determinants...
  8. ncbi Genomic sequence of an otitis media isolate of nontypeable Haemophilus influenzae: comparative study with H. influenzae serotype d, strain KW20
    Alistair Harrison
    Center for Microbial Pathogenesis, Columbus Children's Research Institute, Ohio State University College of Medicine and Public Health, Columbus, Ohio 43205, USA
    J Bacteriol 187:4627-36. 2005
    ..These data provide new insight that complements and extends the ongoing analysis of nontypeable H. influenzae virulence determinants...
  9. ncbi The OxyR regulon in nontypeable Haemophilus influenzae
    Alistair Harrison
    Columbus Children s Research Institute, Center for Microbial Pathogenesis, The Ohio State University College of Medicine and Public Health, 700 Children s Drive, Columbus, OH 43205 2696, USA
    J Bacteriol 189:1004-12. 2007
    ....
  10. ncbi PACRAT: a database and analysis system for archaeal and bacterial intergenic sequence features
    William C Ray
    Children s Research Institute and The Department of Pediatrics, The Ohio State University, 700 Children s Drive, Columbus, OH 43205, USA
    Nucleic Acids Res 31:109-13. 2003
    ..The database is also indexed by KEGG classification, allowing, for example, functionally-related groups of high-quality promoter-containing regions to be easily retrieved as a group...
  11. ncbi A member of the cathelicidin family of antimicrobial peptides is produced in the upper airway of the chinchilla and its mRNA expression is altered by common viral and bacterial co-pathogens of otitis media
    Glen McGillivary
    Columbus Children s Research Institute, Center for Microbial Pathogenesis and The Ohio State University College of Medicine and Public Health, 700 Children s Drive, Rm W591, Columbus, OH 43205, USA
    Mol Immunol 44:2446-58. 2007
    ..Collectively, these data showed that viruses and bacteria modulate AMP messages in the URT, which likely contributes to the disease course of OM...
  12. ncbi Proteome of Haemophilus ducreyi by 2-D SDS-PAGE and mass spectrometry: strain variation, virulence, and carbohydrate expression
    N Karoline Scheffler
    Buck Institute for Age Research, Novato, California 94945, USA
    J Proteome Res 2:523-33. 2003
    ..This African strain may represent a prototype of a second clonal group of H. ducreyi...