Research Topics
| Mihai PopSummaryAffiliation: The Institute for Genomic Research Country: USA Publications
| Collaborators
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Detail Information
Publications
Genome assembly forensics: finding the elusive mis-assemblyAdam M Phillippy
Center for Bioinformatics and Computational Biology, University of Maryland, College Park, MD 20742, USA
Genome Biol 9:R55. 2008..The software described is compatible with common assembly formats and is released, open-source, at http://amos.sourceforge.net...- Hierarchical scaffolding with BambusMihai Pop
The Institute for Genomic Research TIGR, Rockville, Maryland 20850, USA
Genome Res 14:149-59. 2004..Bambus is available as an open-source package from our Web site... - Comparative genome assemblyMihai Pop
The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA
Brief Bioinform 5:237-48. 2004..The software is available as part of the open-source AMOS project... - The dog genome: survey sequencing and comparative analysisEwen F Kirkness
The Institute for Genomic Research, Rockville, MD 20850, USA
Science 301:1898-903. 2003..A variety of polymorphic elements are identified that will be valuable for mapping the genetic basis of diseases and traits in the dog... - Serendipitous discovery of Wolbachia genomes in multiple Drosophila speciesSteven L Salzberg
The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA
Genome Biol 6:R23. 2005.... - Correction: Serendipitous discovery of Wolbachia genomes in multiple Drosophila speciesSteven L Salzberg
The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA
Genome Biol 6:402. 2005..A correction to Serendipitous discovery of Wolbachia genomes in multiple Drosophila species by SL Salzberg, JC Dunning Hotopp, AL Delcher, M Pop, DR Smith, MB Eisen and WC Nelson. Genome Biology 2005, 6:R23... - The genome sequence of Trypanosoma cruzi, etiologic agent of Chagas diseaseNajib M El-Sayed
Department of Parasite Genomics, Institute for Genomic Research, Rockville, MD 20850, USA
Science 309:409-15. 2005.... - Metagenomic analysis of the human distal gut microbiomeSteven R Gill
Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA
Science 312:1355-9. 2006..Thus, humans are superorganisms whose metabolism represents an amalgamation of microbial and human attributes... - Comparative genome sequencing for discovery of novel polymorphisms in Bacillus anthracisTimothy D Read
The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA, Department of Biological Sciences, Northern Arizona University, Flagstaff, AZ 86011, USA
Science 296:2028-33. 2002..These results demonstrate that genome-based analysis of microbial pathogens will provide a powerful new tool for investigation of infectious disease outbreaks... - The genome sequence of Bacillus anthracis Ames and comparison to closely related bacteriaTimothy D Read
The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, Maryland 20850, USA
Nature 423:81-6. 2003..The complete sequence of B. anthracis is a step towards a better understanding of anthrax pathogenesis... - Genome sequence and comparative analysis of the model rodent malaria parasite Plasmodium yoelii yoeliiJane M Carlton
The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, Maryland 20850, USA
Nature 419:512-9. 2002..This is the first genome sequence of a model eukaryotic parasite, and it provides insight into the use of such systems in the modelling of Plasmodium biology and disease... - The genome of the protist parasite Entamoeba histolyticaBrendan Loftus
TIGR, 9712 Medical Center Drive, Rockville, Maryland 20850, USA
Nature 433:865-8. 2005..Analysis of the genome provides new insights into the workings and genome evolution of a major human pathogen... - Using the TIGR assembler in shotgun sequencing projectsMihai Pop
Institute for Genomic Research, Rockville, MD, USA
Methods Mol Biol 255:279-94. 2004 - Bioinformatics challenges of new sequencing technologyMihai Pop
Center for Bioinformatics and Computational Biology, University of Maryland, MD 20742, USA
Trends Genet 24:142-9. 2008.... - Figaro: a novel statistical method for vector sequence removalJames Robert White
Center for Bioinformatics and Computational Biology, University of Maryland College Park, MD 20742, USA
Bioinformatics 24:462-7. 2008..Correct clipping information is essential to scientists attempting to validate, improve and even finish the increasingly large number of genomes released at a 'draft' quality level... - Evolution of genes and genomes on the Drosophila phylogenyAndrew G Clark
Department of Molecular Biology and Genetics, Cornell University, Ithaca, New York 14853, USA
Nature 450:203-18. 2007..These may prove to underlie differences in the ecology and behaviour of these diverse species... - Scaffolding and validation of bacterial genome assemblies using optical restriction mapsNiranjan Nagarajan
University of Maryland, College Park, MD 20742, USA
Bioinformatics 24:1229-35. 2008..In this article we propose methods to overcome such limitations by incorporating information from optical restriction maps... - Minimus: a fast, lightweight genome assemblerDaniel D Sommer
Center for Bioinformatics and Computational Biology, University of Maryland, College Park, MD 20742, USA
BMC Bioinformatics 8:64. 2007..Many of the most common uses of assemblers, however, are best served by a simpler type of assembler that requires fewer software components, uses less memory, and is far easier to install and run... - An optimized system for expression and purification of secreted bacterial proteinsBrian V Geisbrecht
Division of Cell Biology and Biophysics, School of Biological Sciences, University of Missouri Kansas City, 5100 Rockhill Road, Kansas City, MO 64110, USA
Protein Expr Purif 46:23-32. 2006..V. Geisbrecht, B.Y. Hamaoka, B. Perman, A. Zemla, D.J. Leahy, J. Biol. Chem. 280 (2005) 17243-17250)... - Characterization of Ehp, a secreted complement inhibitory protein from Staphylococcus aureusMichal Hammel
School of Biological Sciences, University of Missouri Kansas City, Kansas City, Missouri 64110, USA
J Biol Chem 282:30051-61. 2007..Our results suggest that increased inhibitory potency of Ehp relative to Efb-C is derived from the second C3-binding site in this new protein...