Yunfeng Yang

Summary

Affiliation: Oak Ridge National Laboratory
Country: USA

Publications

  1. ncbi Assessment of data processing to improve reliability of microarray experiments using genomic DNA reference
    Yunfeng Yang
    Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA
    BMC Genomics 9:S5. 2008
  2. ncbi Snapshot of iron response in Shewanella oneidensis by gene network reconstruction
    Yunfeng Yang
    Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA
    BMC Genomics 10:131. 2009
  3. ncbi Characterization of the Shewanella oneidensis Fur gene: roles in iron and acid tolerance response
    Yunfeng Yang
    Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA
    BMC Genomics 9:S11. 2008
  4. ncbi Cellular response of Shewanella oneidensis to strontium stress
    Steven D Brown
    Environmental Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, USA
    Appl Environ Microbiol 72:890-900. 2006
  5. ncbi Constructing gene co-expression networks and predicting functions of unknown genes by random matrix theory
    Feng Luo
    Environmental Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, USA
    BMC Bioinformatics 8:299. 2007
  6. ncbi Use of genomic DNA as reference in DNA microarrays
    Yunfeng Yang
    Biosciences Division, Oak Ridge National Laboratory, TN, Oak Ridge, USA
    Methods Mol Biol 544:439-50. 2009
  7. ncbi Application of random matrix theory to microarray data for discovering functional gene modules
    Feng Luo
    Department of Computer Science, Clemson University, 100 McAdams Hall, Clemson, South Carolina 29634, USA
    Phys Rev E Stat Nonlin Soft Matter Phys 73:031924. 2006

Detail Information

Publications7

  1. ncbi Assessment of data processing to improve reliability of microarray experiments using genomic DNA reference
    Yunfeng Yang
    Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA
    BMC Genomics 9:S5. 2008
    ..Conflicting results have been reported with regard to the reliability of microarray results using this method. To explain it, we hypothesize that data processing is a critical element that impacts the data quality...
  2. ncbi Snapshot of iron response in Shewanella oneidensis by gene network reconstruction
    Yunfeng Yang
    Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA
    BMC Genomics 10:131. 2009
    ..In this work, we integrate physiological, transcriptomics and genetic approaches to delineate the iron response of S. oneidensis...
  3. ncbi Characterization of the Shewanella oneidensis Fur gene: roles in iron and acid tolerance response
    Yunfeng Yang
    Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA
    BMC Genomics 9:S11. 2008
    ..In many bacterial species, coordinate regulation of iron homeostasis depends on the protein product of a Fur gene. Fur also plays roles in virulence, acid tolerance, redox-stress responses, flagella chemotaxis and metabolic pathways...
  4. ncbi Cellular response of Shewanella oneidensis to strontium stress
    Steven D Brown
    Environmental Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, USA
    Appl Environ Microbiol 72:890-900. 2006
    ....
  5. ncbi Constructing gene co-expression networks and predicting functions of unknown genes by random matrix theory
    Feng Luo
    Environmental Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, USA
    BMC Bioinformatics 8:299. 2007
    ....
  6. ncbi Use of genomic DNA as reference in DNA microarrays
    Yunfeng Yang
    Biosciences Division, Oak Ridge National Laboratory, TN, Oak Ridge, USA
    Methods Mol Biol 544:439-50. 2009
    ..In addition, notes are provided to help the readers to obtain optimal results using the procedure...
  7. ncbi Application of random matrix theory to microarray data for discovering functional gene modules
    Feng Luo
    Department of Computer Science, Clemson University, 100 McAdams Hall, Clemson, South Carolina 29634, USA
    Phys Rev E Stat Nonlin Soft Matter Phys 73:031924. 2006
    ..This transition is directly related to the structural change of the gene expression network from a global network to a network of isolated modules...