Janos Posfai

Summary

Affiliation: New England Biolabs
Country: USA

Publications

  1. ncbi Open source tool for prediction of genome wide protein-protein interaction network based on ortholog information
    Chandra Sekhar Pedamallu
    New England Biolabs, Ipswich, MA, USA
    Source Code Biol Med 5:8. 2010
  2. ncbi Reduced evolvability of Escherichia coli MDS42, an IS-less cellular chassis for molecular and synthetic biology applications
    Kinga Umenhoffer
    Institute of Biochemistry, Biological Research Center of the Hungarian Academy of Sciences, 62 Temesvari krt, H6726 Szeged, Hungary
    Microb Cell Fact 9:38. 2010
  3. ncbi DNA damage in preserved specimens and tissue samples: a molecular assessment
    Juergen Zimmermann
    New England Biolabs Inc, 240 County Rd, Ipswich, MA, 01938, USA
    Front Zool 5:18. 2008
  4. ncbi REBASE--a database for DNA restriction and modification: enzymes, genes and genomes
    Richard J Roberts
    New England Biolabs, Inc, 240 County Road, Ipswich, MA 01938, USA
    Nucleic Acids Res 38:D234-6. 2010
  5. ncbi REBASE--restriction enzymes and DNA methyltransferases
    Richard J Roberts
    New England Biolabs, Inc, 32 Tozer Road, Beverly, MA 01915 USA
    Nucleic Acids Res 33:D230-2. 2005
  6. ncbi REBASE--enzymes and genes for DNA restriction and modification
    Richard J Roberts
    New England Biolabs Inc, 240 County Road, Ipswich, MA 01938, USA
    Nucleic Acids Res 35:D269-70. 2007
  7. ncbi NEBcutter: A program to cleave DNA with restriction enzymes
    Tamas Vincze
    New England Biolabs, Inc, 32 Tozer Road, Beverly, MA 01915, USA
    Nucleic Acids Res 31:3688-91. 2003
  8. ncbi REBASE: restriction enzymes and methyltransferases
    Richard J Roberts
    New England Biolabs, Inc, 32 Tozer Road, Beverly, MA 01915, USA
    Nucleic Acids Res 31:418-20. 2003
  9. ncbi Sequencing and analysis of a 63 kb bacterial artificial chromosome insert from the Wolbachia endosymbiont of the human filarial parasite Brugia malayi
    Jennifer Ware
    New England Biolabs, Inc, 32 Tozer Road, Beverly, MA 01915, USA
    Int J Parasitol 32:159-66. 2002
  10. ncbi Using shotgun sequence data to find active restriction enzyme genes
    Yu Zheng
    New England Biolabs, Inc, 240 County Road, Ipswich, MA 01938, USA
    Nucleic Acids Res 37:e1. 2009

Collaborators

Detail Information

Publications12

  1. ncbi Open source tool for prediction of genome wide protein-protein interaction network based on ortholog information
    Chandra Sekhar Pedamallu
    New England Biolabs, Ipswich, MA, USA
    Source Code Biol Med 5:8. 2010
    ..Data sets, derived from such experiments make the development of prediction methods feasible, and make the creation of protein-protein interaction network predicting tools possible...
  2. ncbi Reduced evolvability of Escherichia coli MDS42, an IS-less cellular chassis for molecular and synthetic biology applications
    Kinga Umenhoffer
    Institute of Biochemistry, Biological Research Center of the Hungarian Academy of Sciences, 62 Temesvari krt, H6726 Szeged, Hungary
    Microb Cell Fact 9:38. 2010
    ..Streamlined-genome E. coli MDS42 is free of mutation-generating IS elements, and can serve as a host with reduced evolutionary potential...
  3. ncbi DNA damage in preserved specimens and tissue samples: a molecular assessment
    Juergen Zimmermann
    New England Biolabs Inc, 240 County Rd, Ipswich, MA, 01938, USA
    Front Zool 5:18. 2008
    ..We characterize the fragmentation state of the DNA and aim to identify abundant nucleoside lesions. Finally, simple models are introduced to describe the DNA fragmentation based on nicks and double-strand breaks...
  4. ncbi REBASE--a database for DNA restriction and modification: enzymes, genes and genomes
    Richard J Roberts
    New England Biolabs, Inc, 240 County Road, Ipswich, MA 01938, USA
    Nucleic Acids Res 38:D234-6. 2010
    ..The contents of REBASE may be browsed from the web (http://rebase.neb.com) and selected compilations can be downloaded by ftp (ftp.neb.com). Additionally, monthly updates can be requested via email...
  5. ncbi REBASE--restriction enzymes and DNA methyltransferases
    Richard J Roberts
    New England Biolabs, Inc, 32 Tozer Road, Beverly, MA 01915 USA
    Nucleic Acids Res 33:D230-2. 2005
    ..The contents of REBASE are available by browsing from the web (http://rebase.neb.com/rebase/rebase.html) and through selected compilations by ftp (ftp.neb.com) and as monthly updates that can be requested via email...
  6. ncbi REBASE--enzymes and genes for DNA restriction and modification
    Richard J Roberts
    New England Biolabs Inc, 240 County Road, Ipswich, MA 01938, USA
    Nucleic Acids Res 35:D269-70. 2007
    ..The contents or REBASE may be browsed from the web (http://rebase.neb.com/rebase/rebase.ftp.html) and selected compilations can be downloaded by ftp (ftp.neb.com). Additionally, monthly updates can be requested via email...
  7. ncbi NEBcutter: A program to cleave DNA with restriction enzymes
    Tamas Vincze
    New England Biolabs, Inc, 32 Tozer Road, Beverly, MA 01915, USA
    Nucleic Acids Res 31:3688-91. 2003
    ..Many options exist to choose the enzymes used for digestion, including all known specificities, subsets of those that are commercially available or sets of enzymes that produce compatible termini...
  8. ncbi REBASE: restriction enzymes and methyltransferases
    Richard J Roberts
    New England Biolabs, Inc, 32 Tozer Road, Beverly, MA 01915, USA
    Nucleic Acids Res 31:418-20. 2003
    ..The data is available on the web (http://rebase.neb.com/rebase/rebase.html), through ftp (ftp.neb.com) and as monthly updates via email...
  9. ncbi Sequencing and analysis of a 63 kb bacterial artificial chromosome insert from the Wolbachia endosymbiont of the human filarial parasite Brugia malayi
    Jennifer Ware
    New England Biolabs, Inc, 32 Tozer Road, Beverly, MA 01915, USA
    Int J Parasitol 32:159-66. 2002
    ..malayi host. This will also lead to a better understanding of the interactions between the endosymbiont and its host and will offer novel approaches and drug targets for elimination of filarial disease...
  10. ncbi Using shotgun sequence data to find active restriction enzyme genes
    Yu Zheng
    New England Biolabs, Inc, 240 County Road, Ipswich, MA 01938, USA
    Nucleic Acids Res 37:e1. 2009
    ..Active restriction enzyme genes have been identified, and their activity demonstrated biochemically, in the sequenced genomes of Methanocaldococcus jannaschii, Bacillus cereus ATCC 10987 and Methylococcus capsulatus...
  11. ncbi The Wolbachia genome of Brugia malayi: endosymbiont evolution within a human pathogenic nematode
    Jeremy Foster
    Molecular Parasitology Division, New England Biolabs, Beverly, Massachusetts, USA
    PLoS Biol 3:e121. 2005
    ..Analysis of this first sequenced endosymbiont genome from a filarial nematode provides insight into endosymbiont evolution and additionally provides new potential targets for elimination of cutaneous and lymphatic human filarial disease...
  12. ncbi The complete genome of Teredinibacter turnerae T7901: an intracellular endosymbiont of marine wood-boring bivalves (shipworms)
    Joyce C Yang
    Ocean Genome Legacy Inc, Ipswich, MA, USA
    PLoS ONE 4:e6085. 2009
    ....