Barry Zeeberg

Summary

Affiliation: National Institutes of Health
Country: USA

Publications

  1. ncbi Shannon information theoretic computation of synonymous codon usage biases in coding regions of human and mouse genomes
    Barry Zeeberg
    Laboratory of Molecular Pharmacology, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892, USA
    Genome Res 12:944-55. 2002
  2. ncbi High-Throughput GoMiner, an 'industrial-strength' integrative gene ontology tool for interpretation of multiple-microarray experiments, with application to studies of Common Variable Immune Deficiency (CVID)
    Barry R Zeeberg
    Genomics and Bioinformatics Group, Laboratory of Molecular Pharmacology, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892, USA
    BMC Bioinformatics 6:168. 2005
  3. ncbi Mistaken identifiers: gene name errors can be introduced inadvertently when using Excel in bioinformatics
    Barry R Zeeberg
    Genomics and Bioinformatics Group, Laboratory of Molecular Pharmacology, Center for Cancer Research CCR, National Cancer Institute NCI, National Institutes of Health NIH, Bethesda, MD 20892 USA
    BMC Bioinformatics 5:80. 2004
  4. ncbi RedundancyMiner: De-replication of redundant GO categories in microarray and proteomics analysis
    Barry R Zeeberg
    Laboratory of Molecular Pharmacology, Center for Cancer Research, National Cancer Institute, NIH, Room 5068, Building 37, 37 Convent Drive, Bethesda, MD 20892, USA
    BMC Bioinformatics 12:52. 2011
  5. ncbi MatchMiner: a tool for batch navigation among gene and gene product identifiers
    Kimberly J Bussey
    Genomics and Bioinformatics Group, Laboratory of Molecular Pharmacology, Center for Cancer Research, National Cancer Institute, NIH Building 37, Bethesda, MD 20892-4255, USA
    Genome Biol 4:R27. 2003
  6. ncbi Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences
    Robert L Strausberg
    National Cancer Institute, Bethessda, MD 20892 2580, USA
    Proc Natl Acad Sci U S A 99:16899-903. 2002

Detail Information

Publications6

  1. ncbi Shannon information theoretic computation of synonymous codon usage biases in coding regions of human and mouse genomes
    Barry Zeeberg
    Laboratory of Molecular Pharmacology, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892, USA
    Genome Res 12:944-55. 2002
    ..55. This appears to be a manifestation of an evolutionary strategy for placement of genes in regions of the genome with a GC content that relates synonymous codon bias and protein folding...
  2. ncbi High-Throughput GoMiner, an 'industrial-strength' integrative gene ontology tool for interpretation of multiple-microarray experiments, with application to studies of Common Variable Immune Deficiency (CVID)
    Barry R Zeeberg
    Genomics and Bioinformatics Group, Laboratory of Molecular Pharmacology, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892, USA
    BMC Bioinformatics 6:168. 2005
    ..We wanted to provide a computational resource that automates the analysis of multiple microarrays and then integrates the results across all of them in useful exportable output files and visualizations...
  3. ncbi Mistaken identifiers: gene name errors can be introduced inadvertently when using Excel in bioinformatics
    Barry R Zeeberg
    Genomics and Bioinformatics Group, Laboratory of Molecular Pharmacology, Center for Cancer Research CCR, National Cancer Institute NCI, National Institutes of Health NIH, Bethesda, MD 20892 USA
    BMC Bioinformatics 5:80. 2004
    ..When processing microarray data sets, we recently noticed that some gene names were being changed inadvertently to non-gene names...
  4. ncbi RedundancyMiner: De-replication of redundant GO categories in microarray and proteomics analysis
    Barry R Zeeberg
    Laboratory of Molecular Pharmacology, Center for Cancer Research, National Cancer Institute, NIH, Room 5068, Building 37, 37 Convent Drive, Bethesda, MD 20892, USA
    BMC Bioinformatics 12:52. 2011
    ..The redundancy might typically inflate the report of significant categories by a factor of three-fold, create an illusion of an overly long list of significant categories, and obscure the relevant biological interpretation...
  5. ncbi MatchMiner: a tool for batch navigation among gene and gene product identifiers
    Kimberly J Bussey
    Genomics and Bioinformatics Group, Laboratory of Molecular Pharmacology, Center for Cancer Research, National Cancer Institute, NIH Building 37, Bethesda, MD 20892-4255, USA
    Genome Biol 4:R27. 2003
    ..The user inputs a list of gene identifiers and then uses the Merge function to find the overlap with a second list of identifiers of either the same or a different type or uses the LookUp function to find corresponding identifiers...
  6. ncbi Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences
    Robert L Strausberg
    National Cancer Institute, Bethessda, MD 20892 2580, USA
    Proc Natl Acad Sci U S A 99:16899-903. 2002
    ..All MGC sequences and clones are available without restriction through public databases and clone distribution networks (see http:mgc.nci.nih.gov)...