Joseph F Ryan

Summary

Affiliation: National Institutes of Health
Country: USA

Publications

  1. ncbi Nuclear receptors from the ctenophore Mnemiopsis leidyi lack a zinc-finger DNA-binding domain: lineage-specific loss or ancestral condition in the emergence of the nuclear receptor superfamily?
    Adam M Reitzel
    Biology Department, Woods Hole Oceanographic Institution, Woods Hole, MA, USA
    Evodevo 2:3. 2011
  2. ncbi Genomic insights into Wnt signaling in an early diverging metazoan, the ctenophore Mnemiopsis leidyi
    Kevin Pang
    Kewalo Marine Laboratory, Pacific Biosciences Research Center, University of Hawaii at Manoa, Honolulu, HI, USA
    Evodevo 1:10. 2010
  3. ncbi Hox, Wnt, and the evolution of the primary body axis: insights from the early-divergent phyla
    Joseph F Ryan
    Genome Technology Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD 20892, USA
    Biol Direct 2:37. 2007
  4. ncbi The cnidarian-bilaterian ancestor possessed at least 56 homeoboxes: evidence from the starlet sea anemone, Nematostella vectensis
    Joseph F Ryan
    Bioinformatics Program, Boston University, Cummington Street, Boston, MA 02215, USA
    Genome Biol 7:R64. 2006
  5. ncbi Pre-bilaterian origins of the Hox cluster and the Hox code: evidence from the sea anemone, Nematostella vectensis
    Joseph F Ryan
    Bioinformatics Program, Boston University, Boston, Massachusetts, United States of America
    PLoS ONE 2:e153. 2007
  6. ncbi StellaBase: the Nematostella vectensis Genomics Database
    James C Sullivan
    Department of Biology, Boston University, 5 Cummington Street, Boston, MA 02215, USA
    Nucleic Acids Res 34:D495-9. 2006
  7. ncbi Conserved and novel Wnt clusters in the basal eumetazoan Nematostella vectensis
    James C Sullivan
    Department of Biology, Boston University, 5 Cummington Street, Boston, MA 02215, USA
    Dev Genes Evol 217:235-9. 2007
  8. ncbi Rising starlet: the starlet sea anemone, Nematostella vectensis
    John A Darling
    Department of Biology, Boston University, MA 02215, USA
    Bioessays 27:211-21. 2005
  9. ncbi The homeodomain complement of the ctenophore Mnemiopsis leidyi suggests that Ctenophora and Porifera diverged prior to the ParaHoxozoa
    Joseph F Ryan
    Genome Technology Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA
    Evodevo 1:9. 2010
  10. ncbi Lineage-specific evolution of the vertebrate Otopetrin gene family revealed by comparative genomic analyses
    Belen Hurle
    Genome Technology Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD 20892, USA
    BMC Evol Biol 11:23. 2011

Collaborators

Detail Information

Publications13

  1. ncbi Nuclear receptors from the ctenophore Mnemiopsis leidyi lack a zinc-finger DNA-binding domain: lineage-specific loss or ancestral condition in the emergence of the nuclear receptor superfamily?
    Adam M Reitzel
    Biology Department, Woods Hole Oceanographic Institution, Woods Hole, MA, USA
    Evodevo 2:3. 2011
    ..abstract:..
  2. ncbi Genomic insights into Wnt signaling in an early diverging metazoan, the ctenophore Mnemiopsis leidyi
    Kevin Pang
    Kewalo Marine Laboratory, Pacific Biosciences Research Center, University of Hawaii at Manoa, Honolulu, HI, USA
    Evodevo 1:10. 2010
    ..Genomic data from ctenophores could be particularly relevant, as ctenophores have been proposed to be one of the earliest branching metazoan phyla...
  3. ncbi Hox, Wnt, and the evolution of the primary body axis: insights from the early-divergent phyla
    Joseph F Ryan
    Genome Technology Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD 20892, USA
    Biol Direct 2:37. 2007
    ....
  4. ncbi The cnidarian-bilaterian ancestor possessed at least 56 homeoboxes: evidence from the starlet sea anemone, Nematostella vectensis
    Joseph F Ryan
    Bioinformatics Program, Boston University, Cummington Street, Boston, MA 02215, USA
    Genome Biol 7:R64. 2006
    ..The origin of particular homeobox genes may, therefore, be associated with the evolution of particular animal traits. Here we report the first near-complete set of homeodomains from a basal (diploblastic) animal...
  5. ncbi Pre-bilaterian origins of the Hox cluster and the Hox code: evidence from the sea anemone, Nematostella vectensis
    Joseph F Ryan
    Bioinformatics Program, Boston University, Boston, Massachusetts, United States of America
    PLoS ONE 2:e153. 2007
    ....
  6. ncbi StellaBase: the Nematostella vectensis Genomics Database
    James C Sullivan
    Department of Biology, Boston University, 5 Cummington Street, Boston, MA 02215, USA
    Nucleic Acids Res 34:D495-9. 2006
    ..In addition, StellaBase provides a framework for the integration of additional species-specific databases into CnidBase. StellaBase is available at http://www.stellabase.org...
  7. ncbi Conserved and novel Wnt clusters in the basal eumetazoan Nematostella vectensis
    James C Sullivan
    Department of Biology, Boston University, 5 Cummington Street, Boston, MA 02215, USA
    Dev Genes Evol 217:235-9. 2007
    ..Wnt6 and Wnt10 are not expressed in a spatially or temporally contiguous manner, and Wnt5 and Wnt7 are expressed in different germ layers...
  8. ncbi Rising starlet: the starlet sea anemone, Nematostella vectensis
    John A Darling
    Department of Biology, Boston University, MA 02215, USA
    Bioessays 27:211-21. 2005
    ....
  9. ncbi The homeodomain complement of the ctenophore Mnemiopsis leidyi suggests that Ctenophora and Porifera diverged prior to the ParaHoxozoa
    Joseph F Ryan
    Genome Technology Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA
    Evodevo 1:9. 2010
    ..The homeobox superfamily of genes is particularly suited for these kinds of gene content comparisons, since it is large, diverse, and features a highly conserved domain...
  10. ncbi Lineage-specific evolution of the vertebrate Otopetrin gene family revealed by comparative genomic analyses
    Belen Hurle
    Genome Technology Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD 20892, USA
    BMC Evol Biol 11:23. 2011
    ....
  11. ncbi The diversification of the LIM superclass at the base of the metazoa increased subcellular complexity and promoted multicellular specialization
    Bernard J Koch
    Genome Technology Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland, United States of America
    PLoS ONE 7:e33261. 2012
    ..Despite their fundamental roles in cellular processes and human disease, little is known about the evolution of the LIM superclass...
  12. ncbi CnidBase: The Cnidarian Evolutionary Genomics Database
    Joseph F Ryan
    Boston University, USA
    Nucleic Acids Res 31:159-63. 2003
    ..CnidBase is available at http://cnidbase.bu.edu/...
  13. ncbi Parallel construction of orthologous sequence-ready clone contig maps in multiple species
    James W Thomas
    Genome Technology Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland 20892, USA
    Genome Res 12:1277-85. 2002
    ..The described approach can be used to facilitate the multispecies comparative sequencing of targeted genomic regions and can be adapted for constructing BAC contig maps in other vertebrates...