Research Topics
| Viktor StolcSummaryAffiliation: NASA Ames Research Center Country: USA Publications
| Collaborators
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Detail Information
Publications
Genome-wide transcriptional analysis of flagellar regeneration in Chlamydomonas reinhardtii identifies orthologs of ciliary disease genesViktor Stolc
Genome Research Facility, National Aeronautic and Space Administration, Ames Research Center, Moffett Field, CA 94035, USA
Proc Natl Acad Sci U S A 102:3703-7. 2005....- Transcriptional analysis of highly syntenic regions between Medicago truncatula and Glycine max using tiling microarraysLei Li
Department of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, CT 06520, USA
Genome Biol 9:R57. 2008..The unprecedented complexity and impending completeness of these data create opportunities for new approaches to discovery... - Tiling microarray analysis of rice chromosome 10 to identify the transcriptome and relate its expression to chromosomal architectureLei Li
Department of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, CT 06520, USA
Genome Biol 6:R52. 2005..Experimental evaluation of these gene models and identification of new models will facilitate rice genome annotation and the application of this knowledge to other more complex cereal genomes... - Adaptation of organisms by resonance of RNA transcription with the cellular redox cycleViktor Stolc
NASA Ames Research Center, Moffett Field, California, United States of America
PLoS ONE 6:e25270. 2011..This work demonstrates evidence for a universal, persistent and iterative feedback mechanism between the environment and heredity, whereby acquired variation between cell divisions can outweigh inherited variation... - NASA Radiation Biomarker Workshop, September 27-28, 2007Tore Straume
NASA Ames Research Center, Moffett Field, California 94035, B Columbia University, New York, New York 10032, USA
Radiat Res 170:393-405. 2008..A summary of conclusions is provided at the end of the report... - Global identification of noncoding RNAs in Saccharomyces cerevisiae by modulating an essential RNA processing pathwayManoj Pratim Samanta
Genome Research Facility, National Aeronautics and Space Administration Ames Research Center, Moffet Field, CA 94035, USA
Proc Natl Acad Sci U S A 103:4192-7. 2006..A class of ncRNAs, located antisense to coding regions of verified protein-coding genes, is discussed in this article. One member, HRA1, is likely involved in 18S rRNA maturation... - Identification of an in vitro transcription-based artifact affecting oligonucleotide microarraysDavid C Nelson
Biotechnology Center and Biochemistry Department, University of Wisconsin, 425 Henry Mall, Madison, WI 53706, USA
FEBS Lett 581:3363-70. 2007..While the artifact affected transcript discovery with tiling arrays, it showed only a minor impact on measurements of gene expression using commercially available 'gene-only' expression arrays... - In-depth query of large genomes using tiling arraysManoj Pratim Samanta
Systemix Institute, Cupertino, CA, USA
Methods Mol Biol 377:163-74. 2007..This chapter discusses computational tools and techniques necessary to successfully conduct genome tiling array experiments... - High-resolution mapping of epigenetic modifications of the rice genome uncovers interplay between DNA methylation, histone methylation, and gene expressionXueyong Li
National Institute of Biological Sciences, Beijing 102206, China
Plant Cell 20:259-76. 2008..Collectively, this study provides insights into the rice epigenomes and their effect on gene expression and plant development... - Analysis of transcription factor HY5 genomic binding sites revealed its hierarchical role in light regulation of developmentJungeun Lee
Department of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, Conecticut 06520 8104, USA
Plant Cell 19:731-49. 2007..Our data thus support a model in which HY5 is a high hierarchical regulator of the transcriptional cascades for photomorphogenesis... - Assessing the performance of different high-density tiling microarray strategies for mapping transcribed regions of the human genomeOlof Emanuelsson
Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, Connecticut 06520 8114, USA
Genome Res 17:886-97. 2007..Finally, our experiments reveal a significant amount of novel transcription outside of known genes, and an appreciable sample of this was validated by independent experiments... - The transcriptome of the sea urchin embryoManoj P Samanta
Systemix Institute, Los Altos, CA 94024, USA
Science 314:960-2. 2006..The tiling array data were used to correct and authenticate several thousand gene models during the genome annotation process... - Genome-wide transcription analyses in rice using tiling microarraysLei Li
National Institute of Biological Sciences, Zhongguancun Life Science Park, Beijing 102206, China
Nat Genet 38:124-9. 2006..Collectively, our results provide the first whole-genome transcription map useful for further understanding the rice genome... - A pilot study of transcription unit analysis in rice using oligonucleotide tiling-path microarrayViktor Stolc
Department of Molecular Cellular and Developmental Biology, Yale University, New Haven, CT 06520, USA
Plant Mol Biol 59:137-49. 2005..These preliminary results demonstrate the utility of genome tiling microarrays in evaluating annotated rice gene models and in identifying novel transcription units that will facilitate rice genome annotation... - Issues in the analysis of oligonucleotide tiling microarrays for transcript mappingThomas E Royce
NASA ARC
Trends Genet 21:466-75. 2005..We introduce the informatics challenges arising in the analysis of tiling microarray experiments as open problems to the scientific community and present initial approaches for the analysis of this nascent technology... - Identification of transcribed sequences in Arabidopsis thaliana by using high-resolution genome tiling arraysViktor Stolc
NASA ARC
Proc Natl Acad Sci U S A 102:4453-8. 2005..Transcription activities were also detected for many of the intergenic regions and the small RNAs, including tRNA, small nuclear RNA, small nucleolar RNA, and microRNA. Expression of tRNAs correlates with genome-wide amino acid usage... - Global identification of human transcribed sequences with genome tiling arraysPaul Bertone
Department of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, CT 06520-8103, USA
Science 306:2242-6. 2004..A large fraction of these are located in intergenic regions distal from previously annotated genes and exhibit significant homology to other mammalian proteins... - A gene expression map for the euchromatic genome of Drosophila melanogasterViktor Stolc
Department of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, CT 06520, USA
Science 306:655-60. 2004..Our results provide a draft expression map for the entire nonrepetitive genome, which reveals a much more extensive and diverse set of expressed sequences than was previously predicted...