Drew Endy

Summary

Affiliation: Massachusetts Institute of Technology
Country: USA

Publications

  1. ncbi Measuring the activity of BioBrick promoters using an in vivo reference standard
    Jason R Kelly
    Department of Biological Engineering, Massachusetts Institute of Technology, 77 Massachusetts Avenue, 68 580, Cambridge Massachusetts 02139, USA
    J Biol Eng 3:4. 2009
  2. ncbi Engineering BioBrick vectors from BioBrick parts
    Reshma P Shetty
    Department of Biological Engineering, MIT, 32 Vassar Street Rm 32 311, Cambridge, MA 02139, USA
    J Biol Eng 2:5. 2008
  3. ncbi TABASCO: A single molecule, base-pair resolved gene expression simulator
    Sriram Kosuri
    Department of Biological Engineering, Massachusetts Institute of Technology, 77 Massachusetts Ave, Cambridge, MA 02139 USA
    BMC Bioinformatics 8:480. 2007
  4. ncbi Genomics. Reconstruction of the genomes
    Drew Endy
    Biological Engineering Department, Massachusetts Institute of Technology, Cambridge, MA 02139, USA
    Science 319:1196-7. 2008
  5. ncbi Foundations for engineering biology
    Drew Endy
    Division of Biological Engineering, Massachusetts Institute of Technology, Room 68 580, Koch Biology Building, 31 Ames Street, Cambridge, Massachusetts 02139, USA
    Nature 438:449-53. 2005
  6. ncbi Refactoring bacteriophage T7
    Leon Y Chan
    Department of Biology, Massachusetts Institute of Technology, Cambridge, MA 02139, USA
    Mol Syst Biol 1:2005.0018. 2005
  7. ncbi Signal transduction. Decoding NF-kappaB signaling
    Alice Y Ting
    Department of Chemistry, Massachusetts Institute of Technology, Cambridge, MA 02139, USA
    Science 298:1189-90. 2002
  8. ncbi Stimulus design for model selection and validation in cell signaling
    Joshua F Apgar
    Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA
    PLoS Comput Biol 4:e30. 2008
  9. ncbi Refinement and standardization of synthetic biological parts and devices
    Barry Canton
    Department of Biological Engineering, Massachusetts Institute of Technology, 77 Massachusetts Ave, 68 580, Cambridge, Massachusetts 02139, USA
    Nat Biotechnol 26:787-93. 2008
  10. ncbi Determination of cell fate selection during phage lambda infection
    François St-Pierre
    Department of Biology, Massachusetts Institute of Technology, Cambridge, MA 02139, USA
    Proc Natl Acad Sci U S A 105:20705-10. 2008

Research Grants

  1. Dynamics, Control, and Design of Bacteriophage T7
    Drew Endy; Fiscal Year: 2007

Collaborators

  • Sriram Kosuri
  • Thomas F Knight
  • Bruce Budowle
  • George Church
  • Jason R Kelly
  • Barry Canton
  • Reshma P Shetty
  • Joshua F Apgar
  • François St-Pierre
  • Michele S Garfinkel
  • David Baker
  • Leon Y Chan
  • Alice Y Ting
  • Michael J Czar
  • Aaron L Glieberman
  • Dileep D Monie
  • Caroline M Ajo Franklin
  • Adam J Rubin
  • Kim de Mora
  • Joseph H Davis
  • John Cumbers
  • Anna Labno
  • Bruce Tidor
  • Jared E Toettcher
  • Forest M White
  • Gerald L Epstein
  • Robert M Friedman
  • Christina Smolke
  • Jim Collins
  • Paul Modrich
  • Joseph Jacobson
  • Jay Keasling
  • Ron Weiss

Detail Information

Publications13

  1. ncbi Measuring the activity of BioBrick promoters using an in vivo reference standard
    Jason R Kelly
    Department of Biological Engineering, Massachusetts Institute of Technology, 77 Massachusetts Avenue, 68 580, Cambridge Massachusetts 02139, USA
    J Biol Eng 3:4. 2009
    ..Additional in vivo reference standards for other types of biological functions would seem likely to have similar utility, and could thus improve research on the design, production, and reuse of standard biological parts...
  2. ncbi Engineering BioBrick vectors from BioBrick parts
    Reshma P Shetty
    Department of Biological Engineering, MIT, 32 Vassar Street Rm 32 311, Cambridge, MA 02139, USA
    J Biol Eng 2:5. 2008
    ..Parts that conform to the BioBrick assembly standard are BioBrick standard biological parts. To date, over 2,000 BioBrick parts have been contributed to, and are available from, the Registry of Standard Biological Parts...
  3. ncbi TABASCO: A single molecule, base-pair resolved gene expression simulator
    Sriram Kosuri
    Department of Biological Engineering, Massachusetts Institute of Technology, 77 Massachusetts Ave, Cambridge, MA 02139 USA
    BMC Bioinformatics 8:480. 2007
    ..However, for practical reasons including computational tractability, available simulators have not been able to represent genome-scale models of gene expression at this level of detail...
  4. ncbi Genomics. Reconstruction of the genomes
    Drew Endy
    Biological Engineering Department, Massachusetts Institute of Technology, Cambridge, MA 02139, USA
    Science 319:1196-7. 2008
  5. ncbi Foundations for engineering biology
    Drew Endy
    Division of Biological Engineering, Massachusetts Institute of Technology, Room 68 580, Koch Biology Building, 31 Ames Street, Cambridge, Massachusetts 02139, USA
    Nature 438:449-53. 2005
    ..Vibrant, open research communities and strategic leadership are necessary to ensure that the development and application of biological technologies remains overwhelmingly constructive...
  6. ncbi Refactoring bacteriophage T7
    Leon Y Chan
    Department of Biology, Massachusetts Institute of Technology, Cambridge, MA 02139, USA
    Mol Syst Biol 1:2005.0018. 2005
    ..The viability of our initial design suggests that the genomes encoding natural biological systems can be systematically redesigned and built anew in service of scientific understanding or human intention...
  7. ncbi Signal transduction. Decoding NF-kappaB signaling
    Alice Y Ting
    Department of Chemistry, Massachusetts Institute of Technology, Cambridge, MA 02139, USA
    Science 298:1189-90. 2002
  8. ncbi Stimulus design for model selection and validation in cell signaling
    Joshua F Apgar
    Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA
    PLoS Comput Biol 4:e30. 2008
    ..Taken together, these results provide a strong basis for using designed input stimuli as a tool for the development of cell signaling models...
  9. ncbi Refinement and standardization of synthetic biological parts and devices
    Barry Canton
    Department of Biological Engineering, Massachusetts Institute of Technology, 77 Massachusetts Ave, 68 580, Cambridge, Massachusetts 02139, USA
    Nat Biotechnol 26:787-93. 2008
    ..The process of refinement and characterization leading to the BBa_F2620 datasheet may serve as a starting template for producing many standardized genetically encoded objects...
  10. ncbi Determination of cell fate selection during phage lambda infection
    François St-Pierre
    Department of Biology, Massachusetts Institute of Technology, Cambridge, MA 02139, USA
    Proc Natl Acad Sci U S A 105:20705-10. 2008
    ..Other cell fate decisions now thought to be stochastic might also be determined by pre-existing variation...
  11. ncbi Engineering life: building a fab for biology
    David Baker
    University of Washington, USA
    Sci Am 294:44-51. 2006
  12. ncbi Synthetic genomics | options for governance
    Michele S Garfinkel
    J. Craig Venter Institute, Rockville, Maryland, USA
    Biosecur Bioterror 5:359-62. 2007

Research Grants2

  1. Dynamics, Control, and Design of Bacteriophage T7
    Drew Endy; Fiscal Year: 2007
    ....