Research Topics
| Iain AndersonSummaryAffiliation: Lawrence Berkeley National Laboratory Country: USA Publications
| Collaborators
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Detail Information
Publications
A genomic analysis of the archaeal system Ignicoccus hospitalis-Nanoarchaeum equitansMircea Podar
Biosciences Division, Oak Ridge National Laboratory, 1 Bethel Valley Rd, Oak Ridge, TN 37831, USA
Genome Biol 9:R158. 2008..Little is known about the mechanisms that enable this relationship...- Novel insights into the diversity of catabolic metabolism from ten haloarchaeal genomesIain Anderson
Department of Energy Joint Genome Institute, Walnut Creek, California, United States of America
PLoS ONE 6:e20237. 2011..The extremely halophilic archaea are present worldwide in saline environments and have important biotechnological applications. Ten complete genomes of haloarchaea are now available, providing an opportunity for comparative analysis... - Genomic characterization of methanomicrobiales reveals three classes of methanogensIain Anderson
Joint Genome Institute, Walnut Creek, California, USA
PLoS ONE 4:e5797. 2009..While these organisms appear to be more closely related to the Methanosarcinales in ribosomal-based phylogenetic analyses, they are metabolically more similar to Class I methanogens... - Gene discovery in the Acanthamoeba castellanii genomeIain J Anderson
Department of Parasite Genomics, The Institute for Genomic Research, 9712 Medical Center Dr, Rockville, MD 20850, USA
Protist 156:203-14. 2005..histolytica. Serine, cysteine and metalloproteases were identified, some of which are likely involved in pathogenicity... - The complete genome sequence of Staphylothermus marinus reveals differences in sulfur metabolism among heterotrophic CrenarchaeotaIain J Anderson
Genome Biology Program, Joint Genome Institute, Walnut Creek, USA
BMC Genomics 10:145. 2009..It is the third heterotrophic, obligate sulfur reducing crenarchaeote to be sequenced and provides an opportunity for comparative analysis of the three genomes... - Genome sequence of Thermofilum pendens reveals an exceptional loss of biosynthetic pathways without genome reductionIain Anderson
Joint Genome Institute, 2800 Mitchell Dr, Walnut Creek, CA 94598, USA
J Bacteriol 190:2957-65. 2008.... - Genome analysis of the anaerobic thermohalophilic bacterium Halothermothrix oreniiKonstantinos Mavromatis
DOE Joint Genome Institute, Walnut Creek, California, United States of America
PLoS ONE 4:e4192. 2009.... - IMG: the Integrated Microbial Genomes database and comparative analysis systemVictor M Markowitz
Biological Data Management and Technology Center, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, USA
Nucleic Acids Res 40:D115-22. 2012..jgi.doe.gov/er), teaching courses and training in microbial genome analysis (IMG/EDU: http://img.jgi.doe.gov/edu) and analysis of genomes related to the Human Microbiome Project (IMG/HMP: http://www.hmpdacc-resources.org/img_hmp)... - Genome sequence and analysis of the soil cellulolytic actinomycete Thermobifida fusca YXAthanasios Lykidis
Department of Energy, Joint Genome Institute, 2800 Mitchell Dr, Walnut Creek, CA 94598, USA
J Bacteriol 189:2477-86. 2007..In addition to providing an overview of the physiology of a soil actinomycete, this study presents insights on the transcriptional regulation and secretion of cellulases which may facilitate the industrial exploitation of these systems... - IMG/M: the integrated metagenome data management and comparative analysis systemVictor M Markowitz
Biological Data Management and Technology Center, Computational Research Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, California, CA 94702, USA
Nucleic Acids Res 40:D123-9. 2012..IMG/M is available at http://img.jgi.doe.gov/m. A companion IMG/M systems provide support for annotation and expert review of unpublished metagenomic data sets (IMG/M ER: http://img.jgi.doe.gov/mer)... - The integrated microbial genomes system: an expanding comparative analysis resourceVictor M Markowitz
Biological Data Management and Technology Center, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, California, USA
Nucleic Acids Res 38:D382-90. 2010..Several companion IMG systems have been set up in order to serve domain specific needs, such as expert review of genome annotations. IMG is available at http://img.jgi.doe.gov... - An experimental metagenome data management and analysis systemVictor M Markowitz
Biological Data Management and Technology Center, Lawrence Berkeley National Lab, USA
Bioinformatics 22:e359-67. 2006..IMG/M provides tools and viewers for analyzing both metagenomes and isolate genomes individually or in a comparative context. IMG/M is available at http://img.jgi.doe.gov/m... - Integration of phenotypic metadata and protein similarity in Archaea using a spectral bipartitioning approachSean D Hooper
Department of Energy Joint Genome Institute DOE JGI, Genome Biology Program, Walnut Creek, CA 94598, USA
Nucleic Acids Res 37:2096-104. 2009..Our clusters can be analyzed graphically and interactively online... - The complete multipartite genome sequence of Cupriavidus necator JMP134, a versatile pollutant degraderAthanasios Lykidis
Department of Energy DOE Joint Genome Institute, Walnut Creek, California, United States of America
PLoS ONE 5:e9729. 2010..Cupriavidus necator JMP134 is a Gram-negative beta-proteobacterium able to grow on a variety of aromatic and chloroaromatic compounds as its sole carbon and energy source... - The genome of the protist parasite Entamoeba histolyticaBrendan Loftus
TIGR, 9712 Medical Center Drive, Rockville, Maryland 20850, USA
Nature 433:865-8. 2005..Analysis of the genome provides new insights into the workings and genome evolution of a major human pathogen... - A phylogeny-driven genomic encyclopaedia of Bacteria and ArchaeaDongying Wu
DOE Joint Genome Institute, Walnut Creek, California 94598, USA
Nature 462:1056-60. 2009.... - Entamoeba histolytica: observations on metabolism based on the genome sequenceIain J Anderson
Department of Parasite Genomics, The Institute for Genomic Research, 9712 Medical Center Dr, Rockville, MD 20850, USA
Exp Parasitol 110:173-7. 2005..histolytica. The usual eukaryotic glucose transporters are not present, but members of a prokaryotic monosaccharide transporter family are present... - Symbiosis insights through metagenomic analysis of a microbial consortiumTanja Woyke
DOE Joint Genome Institute, Walnut Creek, California 94598, USA
Nature 443:950-5. 2006..We propose a model that describes how the versatile metabolism within this symbiotic consortium provides the host with an optimal energy supply as it shuttles between the upper oxic and lower anoxic coastal sediments that it inhabits... - The genome of the basidiomycetous yeast and human pathogen Cryptococcus neoformansBrendan J Loftus
Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA
Science 307:1321-4. 2005..neoformans encodes unique genes that may contribute to its unusual virulence properties, and comparison of two phenotypically distinct strains reveals variation in gene content in addition to sequence polymorphisms between the genomes... - Disruption of the operon encoding Ehb hydrogenase limits anabolic CO2 assimilation in the archaeon Methanococcus maripaludisIris Porat
Department of Microbiology, University of Georgia, Athens, Georgia 30602-2605, USA
J Bacteriol 188:1373-80. 2006..These observations support a role for Ehb in anabolic CO2 assimilation in methanococci...