Ben Langmead

Summary

Affiliation: Johns Hopkins Bloomberg School of Public Health
Country: USA

Publications

  1. ncbi Fast gapped-read alignment with Bowtie 2
    Ben Langmead
    Center for Bioinformatics and Computational Biology, Institute for Advanced Computer Studies, University of Maryland, College Park, Maryland, USA
    Nat Methods 9:357-9. 2012
  2. ncbi Searching for SNPs with cloud computing
    Ben Langmead
    Department of Biostatistics, Johns Hopkins Bloomberg School of Public Health, 615 North Wolfe Street, Baltimore, Maryland 21205, USA
    Genome Biol 10:R134. 2009
  3. ncbi Cloud-scale RNA-sequencing differential expression analysis with Myrna
    Ben Langmead
    Department of Biostatistics, Johns Hopkins Bloomberg School of Public Health, 615 North Wolfe Street, Baltimore, MD 21205, USA
    Genome Biol 11:R83. 2010
  4. ncbi Aligning short sequencing reads with Bowtie
    Ben Langmead
    Johns Hopkins University, Baltimore, Maryland, USA
    Curr Protoc Bioinformatics . 2010
  5. ncbi ReCount: a multi-experiment resource of analysis-ready RNA-seq gene count datasets
    Alyssa C Frazee
    Department of Biostatistics, The Johns Hopkins University Bloomberg School of Public Health, 615 North Wolfe Street, Baltimore, MD 21205, USA
    BMC Bioinformatics 12:449. 2011
  6. ncbi Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    Ben Langmead
    Center for Bioinformatics and Computational Biology, Institute for Advanced Computer Studies, University of Maryland, College Park, MD 20742, USA
    Genome Biol 10:R25. 2009

Detail Information

Publications6

  1. ncbi Fast gapped-read alignment with Bowtie 2
    Ben Langmead
    Center for Bioinformatics and Computational Biology, Institute for Advanced Computer Studies, University of Maryland, College Park, Maryland, USA
    Nat Methods 9:357-9. 2012
    ..Bowtie 2 combines the strengths of the full-text minute index with the flexibility and speed of hardware-accelerated dynamic programming algorithms to achieve a combination of high speed, sensitivity and accuracy...
  2. ncbi Searching for SNPs with cloud computing
    Ben Langmead
    Department of Biostatistics, Johns Hopkins Bloomberg School of Public Health, 615 North Wolfe Street, Baltimore, Maryland 21205, USA
    Genome Biol 10:R134. 2009
    ..Crossbow is available from http://bowtie-bio.sourceforge.net/crossbow/...
  3. ncbi Cloud-scale RNA-sequencing differential expression analysis with Myrna
    Ben Langmead
    Department of Biostatistics, Johns Hopkins Bloomberg School of Public Health, 615 North Wolfe Street, Baltimore, MD 21205, USA
    Genome Biol 11:R83. 2010
    ..We apply Myrna to the analysis of publicly available data sets and assess the goodness of fit of standard statistical models. Myrna is available from http://bowtie-bio.sf.net/myrna...
  4. ncbi Aligning short sequencing reads with Bowtie
    Ben Langmead
    Johns Hopkins University, Baltimore, Maryland, USA
    Curr Protoc Bioinformatics . 2010
    ..It also includes protocols for building a genome index and calling consensus sequences from Bowtie alignments using SAMtools...
  5. ncbi ReCount: a multi-experiment resource of analysis-ready RNA-seq gene count datasets
    Alyssa C Frazee
    Department of Biostatistics, The Johns Hopkins University Bloomberg School of Public Health, 615 North Wolfe Street, Baltimore, MD 21205, USA
    BMC Bioinformatics 12:449. 2011
    ..1..
  6. ncbi Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    Ben Langmead
    Center for Bioinformatics and Computational Biology, Institute for Advanced Computer Studies, University of Maryland, College Park, MD 20742, USA
    Genome Biol 10:R25. 2009
    ..Multiple processor cores can be used simultaneously to achieve even greater alignment speeds. Bowtie is open source (http://bowtie.cbcb.umd.edu)...