Kourosh Salehi-Ashtiani

Summary

Affiliation: Harvard University
Country: USA

Publications

  1. ncbi Isoform discovery by targeted cloning, 'deep-well' pooling and parallel sequencing
    Kourosh Salehi-Ashtiani
    Center for Cancer Systems Biology, Department of Cancer Biology, Dana Farber Cancer Institute, 44 Binney Street, Boston, Massachusetts 02115, USA
    Nat Methods 5:597-600. 2008
  2. ncbi Large-scale RACE approach for proactive experimental definition of C. elegans ORFeome
    Kourosh Salehi-Ashtiani
    Center for Cancer Systems Biology CCSB and Department of Cancer Biology, Dana Farber Cancer Institute, and Department of Genetics, Harvard Medical School, Boston, Massachusetts 02115, USA
    Genome Res 19:2334-42. 2009
  3. ncbi Genome-wide functional annotation and structural verification of metabolic ORFeome of Chlamydomonas reinhardtii
    Lila Ghamsari
    Center for Cancer Systems Biology CCSB and Department of Cancer Biology, Dana Farber Cancer Institute, Boston, MA 02115, USA
    BMC Genomics 12:S4. 2011
  4. ncbi Next-generation sequencing to generate interactome datasets
    Haiyuan Yu
    Center for Cancer Systems Biology, Department of Cancer Biology, Dana Farber Cancer Institute, Boston, Massachusetts, USA
    Nat Methods 8:478-80. 2011
  5. ncbi A genomewide search for ribozymes reveals an HDV-like sequence in the human CPEB3 gene
    Kourosh Salehi-Ashtiani
    Howard Hughes Medical Institute, Department of Molecular Biology, and Center for Computational and Integrative Biology CCIB, 7215 Simches Research Center, Massachusetts General Hospital, 185 Cambridge Street, Boston, MA 02114, USA
    Science 313:1788-92. 2006

Collaborators

  • David E Hill
  • Michael E Cusick
  • Pascal Braun
  • Haiyuan Yu
  • Xinping Yang
  • Lila Ghamsari
  • Tong Hao
  • Changyu Fan
  • Frederick P Roth
  • Evan Weiner
  • Santhanam Balaji
  • Marc Vidal
  • Yun Shen
  • Tomoko Hirozane-Kishikawa
  • Fana Gebreab
  • Leah Tardivo
  • Jason A Papin
  • Dawit Balcha
  • Julie Sahalie
  • Stanley Tam
  • Edward Rietman
  • Nenad Svrzikapa

Detail Information

Publications5

  1. ncbi Isoform discovery by targeted cloning, 'deep-well' pooling and parallel sequencing
    Kourosh Salehi-Ashtiani
    Center for Cancer Systems Biology, Department of Cancer Biology, Dana Farber Cancer Institute, 44 Binney Street, Boston, Massachusetts 02115, USA
    Nat Methods 5:597-600. 2008
    ..This ORFeome discovery pipeline will be applicable to any eukaryotic species with a sequenced genome...
  2. ncbi Large-scale RACE approach for proactive experimental definition of C. elegans ORFeome
    Kourosh Salehi-Ashtiani
    Center for Cancer Systems Biology CCSB and Department of Cancer Biology, Dana Farber Cancer Institute, and Department of Genetics, Harvard Medical School, Boston, Massachusetts 02115, USA
    Genome Res 19:2334-42. 2009
    ..Our results show that as much as 20% of the C. elegans genome may be incorrectly annotated. Many annotation errors could be corrected proactively with our large-scale RACE platform...
  3. ncbi Genome-wide functional annotation and structural verification of metabolic ORFeome of Chlamydomonas reinhardtii
    Lila Ghamsari
    Center for Cancer Systems Biology CCSB and Department of Cancer Biology, Dana Farber Cancer Institute, Boston, MA 02115, USA
    BMC Genomics 12:S4. 2011
    ....
  4. ncbi Next-generation sequencing to generate interactome datasets
    Haiyuan Yu
    Center for Cancer Systems Biology, Department of Cancer Biology, Dana Farber Cancer Institute, Boston, Massachusetts, USA
    Nat Methods 8:478-80. 2011
    ..Stitch-seq is applicable to various interaction assays and should help expand interactome network mapping...
  5. ncbi A genomewide search for ribozymes reveals an HDV-like sequence in the human CPEB3 gene
    Kourosh Salehi-Ashtiani
    Howard Hughes Medical Institute, Department of Molecular Biology, and Center for Computational and Integrative Biology CCIB, 7215 Simches Research Center, Massachusetts General Hospital, 185 Cambridge Street, Boston, MA 02114, USA
    Science 313:1788-92. 2006
    ..The occurrence of this ribozyme exclusively in mammals suggests that it may have evolved as recently as 200 million years ago. We postulate that HDV arose from the human transcriptome...