Research Topics
Genomes and Genes | Hai YanSummaryAffiliation: Duke University Medical Center Country: USA Publications
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Publications
Identification of microbial DNA in human cancerChristopher G Duncan
Preston Robert Tisch Brain Tumor Center, Pediatric Brain Tumor Foundation Institute, Department of Pathology, Duke University Medical Center, Durham, North Carolina 27710, USA
BMC Med Genomics 2:22. 2009..CONCLUSION: DK-MICROBE can identify previously unknown infectious agents in human tumors, and is now available for further applications for the identification of pathogen DNA in human cancer and other diseases...- Mutant metabolic enzymes are at the origin of gliomasHai Yan
The Pediatric Brain Tumor Foundation Institute, Duke University Medical Center, Durham, North Carolina, USA
Cancer Res 69:9157-9. 2009..IDH1 and IDH2 mutations define a specific subtype of gliomas and may have significant utility for the diagnosis, prognosis, and treatment of patients with these tumors... - Allelic variations in gene expressionHai Yan
Duke University Medical Center, Department of Pathology, Durham, North Carolina 27710, USA
Curr Opin Oncol 16:39-43. 2004..Thus, it has been hypothesized that the study of natural differential expression presenting within and among populations may enhance understanding of human phenotypic variation... - Profiling the effects of isocitrate dehydrogenase 1 and 2 mutations on the cellular metabolomeZachary J Reitman
The Preston Robert Tisch Brain Tumor Center at Duke, Pediatric Brain Tumor Foundation Institute, Duke University Medical Center, Durham, NC 27710, USA
Proc Natl Acad Sci U S A 108:3270-5. 2011..NAAG also was significantly lower in human glioma tissues containing IDH mutations than in gliomas without such mutations. These metabolic changes provide clues to the pathogenesis of tumors associated with IDH gene mutations... - HDMX regulates p53 activity and confers chemoresistance to 3-bis(2-chloroethyl)-1-nitrosoureaGenglin Jin
Department of Pathology, Pediatric Brain Tumor Foundation Institute and Preston Robert Tisch Brain Tumor Center at Duke, Duke University Medical Center, Durham, North Carolina 27710, USA
Neuro Oncol 12:956-66. 2010..In summary, HDMX exhibits bona fide oncogenic properties and offers a promising molecular target for GBM therapeutic intervention... - OTX2 is critical for the maintenance and progression of Shh-independent medulloblastomasDavid C Adamson
Department of Surgery, The Pediatric Brain Tumor Foundation Institute, and The Preston Robert Tisch Brain Tumor Center at Duke, Duke University Medical Center, Veterans Affairs Medical Center, Durham, North Carolina 27710, USA
Cancer Res 70:181-91. 2010..Mechanistic investigations revealed upregulation of MYC as a potential mechanism whereby OTX2 promotes tumor progression. Our findings define OTX2 as an important oncogenic driver in medulloblastoma... - 2-hydroxyglutarate production, but not dominant negative function, is conferred by glioma-derived NADP-dependent isocitrate dehydrogenase mutationsGenglin Jin
The Preston Robert Tisch Brain Tumor Center at Duke, Pediatric Brain Tumor Foundation Institute, and Department of Pathology, Duke University Medical Center, Durham, North Carolina, United States of America
PLoS ONE 6:e16812. 2011..Genetic evidence indicates that these mutations share a common gain of function, but it is unclear whether the shared function is dominant negative activity, neomorphic production of (R)-2-hydroxyglutarate (2HG), or both... - Integrated genomic analyses identify ERRFI1 and TACC3 as glioblastoma-targeted genesChristopher G Duncan
The Preston Robert Tisch Brain Tumor Center, The Pediatric Brain Tumor Foundation, The Department of Pathology, Duke University Medical Center, Durham, NC 27710, USA
Oncotarget 1:265-77. 2010..Our multifaceted genomic evaluation of glioblastoma establishes ERRFI1 as a potential candidate tumor suppressor gene and TACC3 as a potential oncogene, and provides insight on targets for oncogenic pathway-based therapy... - Isocitrate dehydrogenase 1 and 2 mutations in cancer: alterations at a crossroads of cellular metabolismZachary J Reitman
Department of Pathology, The Pediatric Brain Tumor Foundation Institute, Duke University Medical Center, Durham, NC 27710, USA
J Natl Cancer Inst 102:932-41. 2010..Study of alterations in these metabolic enzymes may provide insights into the metabolism of cancer cells and uncover novel avenues for development of anticancer therapeutics... - Glioblastoma proto-oncogene SEC61gamma is required for tumor cell survival and response to endoplasmic reticulum stressZheming Lu
Department of Pathology, The Pediatric Brain Tumor Foundation Institute, Duke University Medical Center, Durham, North Carolina 27710, USA
Cancer Res 69:9105-11. 2009.... - IDH1 and IDH2 mutations in gliomasHai Yan
Department of Pathology, Pediatric Brain Tumor Foundation Institute, Duke University Medical Center, Durham, NC 27710, USA
N Engl J Med 360:765-73. 2009.... - Identification of OTX2 as a medulloblastoma oncogene whose product can be targeted by all-trans retinoic acidChunhui Di
Brain Tumor Center, Department of Pathology, Duke University Medical Center, Research Drive, Durham, NC 27710, USA
Cancer Res 65:919-24. 2005..These observations suggest that OTX2 is essential for the pathogenesis of anaplastic medulloblastomas and that these tumors may be amenable to therapy with all-trans-retinoic acid... - IDH1(R132) mutation identified in one human melanoma metastasis, but not correlated with metastases to the brainGiselle Y Lopez
The Preston Robert Tisch Brain Tumor Center, The Pediatric Brain Tumor Foundation, and the Department of Pathology, Duke University Medical Center, DUMC 3156, Durham, NC 27710, USA
Biochem Biophys Res Commun 398:585-7. 2010..Studies on the cell-lineages of tumors with IDH1/2 mutations may help clarify the role of these mutations in the development of brain tumors... - A monoclonal antibody IMab-1 specifically recognizes IDH1R132H, the most common glioma-derived mutationYukinari Kato
Department of Pathology, Duke University Medical Center, DUMC 3156, Durham, NC 27710, USA
Biochem Biophys Res Commun 390:547-51. 2009..In conclusion, we established an anti-IDH1(R132H)-specific monoclonal antibody IMab-1, which should be significantly useful for diagnosis and biological evaluation of mutation-bearing gliomas... - Aberrant otx2 expression enhances migration and induces ectopic proliferation of hindbrain neuronal progenitor cellsMatthew Wortham
Department of Pathology, The Pediatric Brain Tumor Foundation Institute, and The Preston Robert Tisch Brain Tumor Center at Duke, Duke University Medical Center, Durham, North Carolina, United States of America
PLoS ONE 7:e36211. 2012..These studies implicate a role for Otx2 in altering the dynamics of neuronal progenitor cell proliferation... - Isocitrate dehydrogenase mutations in gliomas: mechanisms, biomarkers and therapeutic targetChangcun Guo
The Preston Robert Tisch Brain Tumor Center at Duke, Pediatric Brain Tumor Foundation Institute, Department of Pathology, Duke University Medical Center, Durham, North Carolina 27710, USA
Curr Opin Neurol 24:648-52. 2011..The mechanisms of IDH mutations in gliomagenesis, and their value as diagnostic, prognostic marker and therapeutic target have been extensively studied. This review is to summarize the findings of these studies... - Digital karyotyping technology: exploring the cancer genomeTimothy J Parrett
Department of Pathology, Brain Tumor Center, Duke University Medical Center, 3156, Durham, NC 27710, USA
Expert Rev Mol Diagn 5:917-25. 2005.... - Mutations of PIK3CA in anaplastic oligodendrogliomas, high-grade astrocytomas, and medulloblastomasDaniel K Broderick
Brain Tumor Center, Department of Pathology, Duke University Medical Center, Durham, NC 27710, USA
Cancer Res 64:5048-50. 2004..These observations implicate PIK3CA as an oncogene in a wider spectrum of adult and pediatric brain tumors and suggest that PIK3CA may be a useful diagnostic marker or a therapeutic target in these cancers... - Altered telomeres in tumors with ATRX and DAXX mutationsChristopher M Heaphy
Department of Pathology, Sol Goldman Pancreatic Cancer Research Center, Johns Hopkins Medical Institutions, Baltimore, MD 21231, USA
Science 333:425. 2011..ATRX mutations also correlate with abnormal telomeres in tumors of the central nervous system. These data suggest that an alternative telomere maintenance function may operate in human tumors with alterations in the ATRX or DAXX genes... - IDH1 and IDH2: not your typical oncogenesZachary J Reitman
The Preston Robert Tisch Brain Tumor Center at Duke, The Pediatric Brain Tumor Institute, and the Department of Pathology, Duke University Medical Center, Durham, NC 27710, USA
Cancer Cell 17:215-6. 2010..However, seemingly oncogenic mutations in IDH1 and IDH2 reduce their native enzyme activity. In this issue of Cancer Cell, Ward et al. pin down a neomorphic enzyme activity as a possible oncogenic function for these alterations... - Snapshot of the allele-specific variation in human gene expressionHai Yan
Department of Pathology, Duke University Meeical Center, Durham, NC, USA
Methods Mol Biol 311:31-8. 2005..The studies of allele-specific expression revealed that differential expression is relatively common in the human population... - Allelic variation in human gene expressionHai Yan
Sidney Kimmel Comprehensive Cancer Center and Howard Hughes Medical Institute, Johns Hopkins Medical Institutions, Baltimore, MD 21231, USA
Science 297:1143. 2002 - An integrated genomic analysis of human glioblastoma multiformeD Williams Parsons
Ludwig Center for Cancer Genetics and Therapeutics, and Howard Hughes Medical Institute at Johns Hopkins Kimmel Cancer Center, Baltimore, MD 21231, USA
Science 321:1807-12. 2008..These studies demonstrate the value of unbiased genomic analyses in the characterization of human brain cancer and identify a potentially useful genetic alteration for the classification and targeted therapy of GBMs... - Allele separation facilitates interpretation of potential splicing alterations and genomic rearrangementsHidewaki Nakagawa
Human Cancer Genetics Program, Comprehensive Cancer Center, The Ohio State University, Columbus, Ohio 43210, USA
Cancer Res 62:4579-82. 2002..These results allowed pathogenicity to be unambiguously assigned to the mutations and increased the sensitivity of genomic testing... - High frequency of mutations of the PIK3CA gene in human cancersYardena Samuels
Sidney Kimmel Comprehensive Cancer Center, Howard Hughes Medical Institute, The Johns Hopkins University Medical Institutions, Baltimore, MD 21231, USA
Science 304:554. 2004 - Detection of allelic variations of human gene expression by polymerase coloniesJames A Butz
Department of Chemical Engineering, University of Delaware, Newark, DE 19716, USA
BMC Genet 5:3. 2004..Herein, we describe the application of an immobilized polymerase chain reaction technique as an alternative approach to measure relative allelic differential expression... - Somatic mutations of GUCY2F, EPHA3, and NTRK3 in human cancersLaura D Wood
The Ludwig Center for Cancer Genetics and Therapeutics, The Howard Hughes Medical Institute, Johns Hopkins Kimmel Cancer Center, Baltimore, Maryland 21231, USA
Hum Mutat 27:1060-1. 2006..Our results implicate these tyrosine kinase genes in the pathogenesis of other tumor types and suggest that they may be useful targets for diagnostic and therapeutic intervention in selected patients... - Small changes in expression affect predisposition to tumorigenesisHai Yan
The Howard Hughes Medical Institute, The Oncology Center, and the Department of Medicine, The Johns Hopkins Medical Institutions, Baltimore, Maryland 21231, USA
Nat Genet 30:25-6. 2002....
Research Grants
- The Role of OTX2 in Molecular Pathogenesis of MedulloblastomaHai Yan; Fiscal Year: 2009....
- The Role of OTX2 in Molecular Pathogenesis of MedulloblastomaHai Yan; Fiscal Year: 2010....
- The Role of OTX2 in Molecular Pathogenesis of MedulloblastomaHai Yan; Fiscal Year: 2009....
- Role of IDH1 and IDH2 Mutations in Glioma Cellular Biology and PathogenesisHai Yan; Fiscal Year: 2010....
- The Role of OTX2 in Molecular Pathogenesis of MedulloblastomaHai Yan; Fiscal Year: 2010....