Madhavi Ganapathiraju

Summary

Affiliation: Carnegie Mellon University
Country: USA

Publications

  1. ncbi Transmembrane helix prediction using amino acid property features and latent semantic analysis
    Madhavi Ganapathiraju
    Language Technologies Institute, Carnegie Mellon University, Pittsburgh, USA
    BMC Bioinformatics 9:S4. 2008
  2. ncbi TMpro web server and web service: transmembrane helix prediction through amino acid property analysis
    Madhavi Ganapathiraju
    Language Technologies Institute, School of Computer Science, Carnegie Mellon University, Pittsburgh, PA 15213, USA
    Bioinformatics 23:2795-6. 2007
  3. ncbi Comparison of stability predictions and simulated unfolding of rhodopsin structures
    Oznur Tastan
    Language Technologies Institute, School of Computer Science, Carnegie Mellon University, Pittsburgh, PA, USA
    Photochem Photobiol 83:351-62. 2007
  4. ncbi BLMT: statistical sequence analysis using N-grams
    Madhavi Ganapathiraju
    Language Technologies Institute, Carnegie Mellon University, 4400 Fifth Avenue, Pittsburgh, PA 15213, USA
    Appl Bioinformatics 3:193-200. 2004
  5. ncbi Evolutionary insights from suffix array-based genome sequence analysis
    Anindya Poddar
    Supercomputer Education and Research Centre, Indian Institute of Science, Bangalore 560 012, India
    J Biosci 32:871-81. 2007

Collaborators

Detail Information

Publications5

  1. ncbi Transmembrane helix prediction using amino acid property features and latent semantic analysis
    Madhavi Ganapathiraju
    Language Technologies Institute, Carnegie Mellon University, Pittsburgh, USA
    BMC Bioinformatics 9:S4. 2008
    ..Thus, there is a need for methods that can better predict TM helices even in novel topologies and families...
  2. ncbi TMpro web server and web service: transmembrane helix prediction through amino acid property analysis
    Madhavi Ganapathiraju
    Language Technologies Institute, School of Computer Science, Carnegie Mellon University, Pittsburgh, PA 15213, USA
    Bioinformatics 23:2795-6. 2007
    ..Availability: http://linzer.blm.cs.cmu.edu/tmpro/ (web server and help), http://blm.sis.pitt.edu:8080/axis/services/TMProFetcherService (web service)...
  3. ncbi Comparison of stability predictions and simulated unfolding of rhodopsin structures
    Oznur Tastan
    Language Technologies Institute, School of Computer Science, Carnegie Mellon University, Pittsburgh, PA, USA
    Photochem Photobiol 83:351-62. 2007
    ....
  4. ncbi BLMT: statistical sequence analysis using N-grams
    Madhavi Ganapathiraju
    Language Technologies Institute, Carnegie Mellon University, 4400 Fifth Avenue, Pittsburgh, PA 15213, USA
    Appl Bioinformatics 3:193-200. 2004
    ..The n-gram computations carried out by the BLMT are part of a broader set of tools borrowed from language technologies and modified for statistical analysis of biological sequences; these are available at http://flan.blm.cs.cmu.edu/...
  5. ncbi Evolutionary insights from suffix array-based genome sequence analysis
    Anindya Poddar
    Supercomputer Education and Research Centre, Indian Institute of Science, Bangalore 560 012, India
    J Biosci 32:871-81. 2007
    ..As an example, 16 members of one COG,coded by the genome of Mycobacterium tuberculosis H37Rv have been found to contain a repeating sequence of 300 amino acids...