Jonathan Backer

Summary

Affiliation: Albert Einstein College of Medicine
Country: USA

Publications

  1. ncbi New methods for capturing the mystery lipid, PtdIns5P
    Jonathan M Backer
    Department of Molecular Pharmacology, Albert Einstein College of Medicine, Bronx, NY 10461, USA
    Biochem J 428:e1-2. 2010
  2. ncbi The regulation and function of Class III PI3Ks: novel roles for Vps34
    Jonathan M Backer
    Department of Molecular Pharmacology, Albert Einstein College of Medicine, 1300 Morris Park Avenue, Bronx, NY 10461, USA
    Biochem J 410:1-17. 2008
  3. ncbi Cdc42 is required for EGF-stimulated protrusion and motility in MTLn3 carcinoma cells
    Mirvat El-Sibai
    Molecular Pharmacology, Albert Einstein College of Medicine, 1300 Morris Park Avenue, Bronx, NY 10461, USA
    J Cell Sci 120:3465-74. 2007
  4. ncbi RhoA/ROCK-mediated switching between Cdc42- and Rac1-dependent protrusion in MTLn3 carcinoma cells
    Mirvat El-Sibai
    Department of Molecular Pharmacology, Albert Einstein College of Medicine, 1300 Morris Park Avenue, Bronx, NY 10461, USA
    Exp Cell Res 314:1540-52. 2008
  5. ncbi The distinct roles of Ras and Rac in PI 3-kinase-dependent protrusion during EGF-stimulated cell migration
    Shu Chin Yip
    Department of Molecular Pharmacology, Albert Einstein College of Medicine, Bronx, NY 10461, USA
    J Cell Sci 120:3138-46. 2007
  6. ncbi Local signaling by the EGF receptor
    Stephan J Kempiak
    Department of Anatomy and Structural Biology, Albert Einstein College of Medicine, New York, NY 10461, USA
    J Cell Biol 162:781-7. 2003
  7. ncbi hVps34 is a nutrient-regulated lipid kinase required for activation of p70 S6 kinase
    Maya P Byfield
    Department of Molecular Pharmacology, Albert Einstein College of Medicine, Bronx, New York 10461, USA
    J Biol Chem 280:33076-82. 2005
  8. ncbi WASP family members and formin proteins coordinate regulation of cell protrusions in carcinoma cells
    Corina Sarmiento
    Department of Anatomy and Structural Biology, Albert Einstein College of Medicine, Yeshiva University, Bronx, NY 10461, USA
    J Cell Biol 180:1245-60. 2008
  9. ncbi Effectively doubling the magnetic field in spin-1/2-spin-1, HSQC, HDQC, coupled HSQC, and coupled HDQC in solution NMR
    S Chandra Shekar
    Department of Molecular Pharmacology, Albert Einstein College of Medicine, Yeshiva University, 1300 Morris Park Avenue, Bronx, NY 10461, USA
    J Chem Phys 128:184501. 2008
  10. ncbi EGF-induced PIP2 hydrolysis releases and activates cofilin locally in carcinoma cells
    Jacco van Rheenen
    Department of Anatomy and Structural Biology, Albert Einstein College of Medicine of Yeshiva University, Bronx, NY 10461, USA
    J Cell Biol 179:1247-59. 2007

Research Grants

Collaborators

Detail Information

Publications39

  1. ncbi New methods for capturing the mystery lipid, PtdIns5P
    Jonathan M Backer
    Department of Molecular Pharmacology, Albert Einstein College of Medicine, Bronx, NY 10461, USA
    Biochem J 428:e1-2. 2010
    ..In this issue of the Biochemical Journal, Sarkes and Rameh describe a novel HPLC-based approach which makes possible an analysis of the subcellular distribution of PtdIns5P and other phosphoinositides...
  2. ncbi The regulation and function of Class III PI3Ks: novel roles for Vps34
    Jonathan M Backer
    Department of Molecular Pharmacology, Albert Einstein College of Medicine, 1300 Morris Park Avenue, Bronx, NY 10461, USA
    Biochem J 410:1-17. 2008
    ..Thus Class III PI3Ks are implicated in the regulation of both autophagy and, through the mTOR pathway, protein synthesis, and thus contribute to the integration of cellular responses to changing nutritional status...
  3. ncbi Cdc42 is required for EGF-stimulated protrusion and motility in MTLn3 carcinoma cells
    Mirvat El-Sibai
    Molecular Pharmacology, Albert Einstein College of Medicine, 1300 Morris Park Avenue, Bronx, NY 10461, USA
    J Cell Sci 120:3465-74. 2007
    ..Our data suggest that Cdc42 activation is crucial for the regulation of actin polymerization in carcinoma cells, and required for both EGF-stimulated protrusion and cell motility independently of effects on Rac...
  4. ncbi RhoA/ROCK-mediated switching between Cdc42- and Rac1-dependent protrusion in MTLn3 carcinoma cells
    Mirvat El-Sibai
    Department of Molecular Pharmacology, Albert Einstein College of Medicine, 1300 Morris Park Avenue, Bronx, NY 10461, USA
    Exp Cell Res 314:1540-52. 2008
    ..These data describe a novel role for Rho in coordinating signaling by Rac and Cdc42...
  5. ncbi The distinct roles of Ras and Rac in PI 3-kinase-dependent protrusion during EGF-stimulated cell migration
    Shu Chin Yip
    Department of Molecular Pharmacology, Albert Einstein College of Medicine, Bronx, NY 10461, USA
    J Cell Sci 120:3138-46. 2007
    ..These data suggest an unappreciated role for Ras during protrusion, and a crucial role for Rac in the stabilization of protrusions required for cell motility...
  6. ncbi Local signaling by the EGF receptor
    Stephan J Kempiak
    Department of Anatomy and Structural Biology, Albert Einstein College of Medicine, New York, NY 10461, USA
    J Cell Biol 162:781-7. 2003
    ..Thus, we find differing spatial scales of signaling from the EGF receptor, supporting models of chemotaxis that integrate short- and long-range signaling...
  7. ncbi hVps34 is a nutrient-regulated lipid kinase required for activation of p70 S6 kinase
    Maya P Byfield
    Department of Molecular Pharmacology, Albert Einstein College of Medicine, Bronx, New York 10461, USA
    J Biol Chem 280:33076-82. 2005
    ..Our data suggest that hVps34 is a nutrient-regulated lipid kinase that integrates amino acid and glucose inputs to mTOR and S6K1...
  8. ncbi WASP family members and formin proteins coordinate regulation of cell protrusions in carcinoma cells
    Corina Sarmiento
    Department of Anatomy and Structural Biology, Albert Einstein College of Medicine, Yeshiva University, Bronx, NY 10461, USA
    J Cell Biol 180:1245-60. 2008
    ..These data show that coordinate regulation between the WASP family and mDia proteins controls the balance between lamellar and lamellipodial protrusion activity...
  9. ncbi Effectively doubling the magnetic field in spin-1/2-spin-1, HSQC, HDQC, coupled HSQC, and coupled HDQC in solution NMR
    S Chandra Shekar
    Department of Molecular Pharmacology, Albert Einstein College of Medicine, Yeshiva University, 1300 Morris Park Avenue, Bronx, NY 10461, USA
    J Chem Phys 128:184501. 2008
    ..The coupling doubling, however, is independent of the magnetic field strength and a signature feature of the 2Q coherence. The ramification of the relative relaxation rates of 1Q and 2Q coherences is discussed...
  10. ncbi EGF-induced PIP2 hydrolysis releases and activates cofilin locally in carcinoma cells
    Jacco van Rheenen
    Department of Anatomy and Structural Biology, Albert Einstein College of Medicine of Yeshiva University, Bronx, NY 10461, USA
    J Cell Biol 179:1247-59. 2007
    ..Moreover, our data provide evidence for how PLC is involved in the formation of protrusions in breast carcinoma cells during chemotaxis and metastasis towards EGF...
  11. ncbi Cofilin determines the migration behavior and turning frequency of metastatic cancer cells
    Mazen Sidani
    Department of Anatomy and Structural Biology, Albert Einstein College of Medicine of Yeshiva University, Bronx, NY 10461, USA
    J Cell Biol 179:777-91. 2007
    ..The changes in cell shape, directional migration, and turning frequency were related to the re-localization of Arp2/3 complex to one pole of the cell upon suppression of cofilin expression...
  12. ncbi Activation of hypothalamic S6 kinase mediates diet-induced hepatic insulin resistance in rats
    Hiraku Ono
    Department of Medicine, Diabetes Research Center, Albert Einstein College of Medicine, New York, New York 10461, USA
    J Clin Invest 118:2959-68. 2008
    ..These results suggest that activation of hypothalamic S6K contributes to hepatic insulin resistance in response to short-term nutrient excess...
  13. ncbi The regulation of class IA PI 3-kinases by inter-subunit interactions
    Jonathan M Backer
    Department of Molecular Pharmacology, Albert Einstein College of Medicine, Bronx, NY, 10461, USA
    Curr Top Microbiol Immunol 346:87-114. 2010
    ..The complex web of signaling downstream from Class IA PI 3-kinases will be discussed in other chapters in this volume...
  14. ncbi Phospholipase C and cofilin are required for carcinoma cell directionality in response to EGF stimulation
    Ghassan Mouneimne
    Department of Anatomy and Structural Biology, Albert Einstein College of Medicine, 1300 Morris Park Ave, Bronx, NY 10461, USA
    J Cell Biol 166:697-708. 2004
    ..Therefore, our results demonstrate that the early PLC and cofilin-dependent barbed end transient is required for the initiation of protrusions and is involved in setting the direction of cell movement in response to EGF...
  15. ncbi Over-expression of the p110beta but not p110alpha isoform of PI 3-kinase inhibits motility in breast cancer cells
    Shu Chin Yip
    Department of Molecular Pharmacology, Albert Einstein College of Medicine, 1300 Morris Park Avenue, Bronx, NY 10461, USA
    Cell Motil Cytoskeleton 59:180-8. 2004
    ..Identification of effectors that are differently regulated by p110alpha versus p110beta will be important for understanding cell migration and its role in metastasis...
  16. ncbi Phospholipase C gamma negatively regulates Rac/Cdc42 activation in antigen-stimulated mast cells
    Mirvat El Sibai
    Department of Molecular Pharmacology, Albert Einstein College of Medicine, Bronx, NY 10461, USA
    Eur J Immunol 37:261-70. 2007
    ..These data suggest that PLCgamma is involved in a negative feedback loop that leads to the inhibition of Rac and Cdc42. They also suggest that the presence of intracellular calcium is a prerequisite for both Rac and Cdc42 activation...
  17. ncbi Quantification of PtdIns(3,4,5)P(3) dynamics in EGF-stimulated carcinoma cells: a comparison of PH-domain-mediated methods with immunological methods
    Shu Chin Yip
    Department of Molecular Pharmacology, Albert Einstein College of Medicine, 1300 Morris Park Avenue, Bronx, NY 10461, USA
    Biochem J 411:441-8. 2008
    ..These data suggest that anti-PtdIns(3,4,5)P(3) antibodies are a useful tool to detect localized PtdIns(3,4,5)P(3), and illustrate the importance of using multiple approaches for the estimation of membrane phosphoinositides...
  18. ncbi Differential enhancement of breast cancer cell motility and metastasis by helical and kinase domain mutations of class IA phosphoinositide 3-kinase
    Huan Pang
    Department of Molecular Pharmacology, Albert Einstein College of Medicine, Bronx, New York 10461, USA
    Cancer Res 69:8868-76. 2009
    ..Our observations suggest that, when compared with kinase domain mutations in a genetically identical background, expression of helical domain mutants of p110alpha produce a more severe metastatic phenotype...
  19. ncbi Mechanism of constitutive phosphoinositide 3-kinase activation by oncogenic mutants of the p85 regulatory subunit
    S Chandra Shekar
    Department of Molecular Pharmacology, Albert Einstein College of Medicine, Bronx, New York 10461, USA
    J Biol Chem 280:27850-5. 2005
    ..Based on these findings, we propose a general model for oncogenic mutants of p85 and p110 in which disruption of nSH2-p110 regulatory contacts leads to constitutive p110 activity...
  20. ncbi In brain, Axl recruits Grb2 and the p85 regulatory subunit of PI3 kinase; in vitro mutagenesis defines the requisite binding sites for downstream Akt activation
    Jason G Weinger
    Department of Pathology, Albert Einstein College of Medicine, Bronx, New York 10461, USA
    J Neurochem 106:134-46. 2008
    ....
  21. ncbi YXXM motifs in the PDGF-beta receptor serve dual roles as phosphoinositide 3-kinase binding motifs and tyrosine-based endocytic sorting signals
    Haiyan Wu
    Department of Molecular Pharmacology, Albert Einstein College of Medicine, Bronx, New York 10461, USA
    J Biol Chem 278:40425-8. 2003
    ..These data suggest that the YXXM motifs in the PDGFR serve two distinct functions: PI 3-kinase recruitment and lysosomal targeting...
  22. ncbi The iSH2 domain of PI 3-kinase is a rigid tether for p110 and not a conformational switch
    Zheng Fu
    Department of Molecular Pharmacology, Albert Einstein College of Medicine, Bronx, NY, USA
    Arch Biochem Biophys 432:244-51. 2004
    ..These data support a model in which the iSH2 domain is a rigid tether for p110, and regulation of p85/p110 is mediated by nSH2-p110 contacts...
  23. ncbi hVps15, but not Ca2+/CaM, is required for the activity and regulation of hVps34 in mammalian cells
    Ying Yan
    Department of Molecular Pharmacology, Albert Einstein College of Medicine, Bronx, NY 10461, USA
    Biochem J 417:747-55. 2009
    ..The results of the present study show that, in mammalian cells, hVps34 activity is regulated through its interactions with hVps15, but is independent of Ca2+/CaM...
  24. ncbi Regulation of Class IA PI 3-kinases: C2 domain-iSH2 domain contacts inhibit p85/p110alpha and are disrupted in oncogenic p85 mutants
    Haiyan Wu
    Department of Molecular Pharmacology, Albert Einstein College of Medicine, 1300 Morris Park Avenue, Bronx, NY 10461, USA
    Proc Natl Acad Sci U S A 106:20258-63. 2009
    ..Thus, our data suggests that mutations at the C2-iSH2 domain contact and truncations of the iSH2 domain, which are found in human tumors, both act by disrupting the C2-iSH2 domain interface...
  25. ncbi The structure of p85ni in class IA phosphoinositide 3-kinase exhibits interdomain disorder
    K Ilker Sen
    Department of Physiology and Biophysics, Albert Einstein College of Medicine, 1300 Morris Park Avenue, Bronx, New York 10461, USA
    Biochemistry 49:2159-66. 2010
    ..These data have important implications for the mechanism by which p85/p110 dimers are regulated by phosphopeptides...
  26. ncbi The structure of the inter-SH2 domain of class IA phosphoinositide 3-kinase determined by site-directed spin labeling EPR and homology modeling
    Zheng Fu
    Department of Molecular Pharmacology, Albert Einstein College of Medicine, Bronx, NY 10461, USA
    Proc Natl Acad Sci U S A 100:3275-80. 2003
    ..The inter-SH2 domain is assigned as a rigid anti-parallel coiled-coil whose primary function is to bind p110, facilitating inhibition of p110 by the N-terminal SH2 domain of p85...
  27. ncbi The late endosome is essential for mTORC1 signaling
    Rory J Flinn
    Department of Molecular Pharmacology, Albert Einstein College of Medicine, Bronx, NY 10461, USA
    Mol Biol Cell 21:833-41. 2010
    ....
  28. ncbi Distinct phosphoinositide 3-kinases mediate mast cell degranulation in response to G-protein-coupled versus FcepsilonRI receptors
    David A Windmiller
    Department of Molecular Pharmacology, Albert Einstein College of Medicine, Bronx, New York 10461, USA
    J Biol Chem 278:11874-8. 2003
    ..Elucidation of the intersections between these distinct pathways will lead to new insights into mast cell degranulation...
  29. ncbi Role of Rab5 in the recruitment of hVps34/p150 to the early endosome
    James T Murray
    Department of Molecular Pharmacology, Albert Einstein College of Medicine, Bronx, NY, USA
    Traffic 3:416-27. 2002
    ..However, Rab5 does not appear to act by directly recruiting p150/hVps34 complexes from the cytosol to the endosomal membrane...
  30. ncbi Fyn phosphorylates human MAP-2c on tyrosine 67
    S Pilar Zamora-Leon
    Department of Pathology, Albert Einstein College of Medicine, Bronx, New York 10461, USA
    J Biol Chem 280:1962-70. 2005
    ..Thus, MAP-2c can directly recruit multiple signaling proteins important for central nervous system development...
  31. ncbi Substrate specificity: PI(3)Kgamma has it both ways
    Jonathan M Backer
    Nat Cell Biol 7:773-4. 2005
  32. ncbi Inhibition of autophagy in mitotic animal cells
    Eeva Liisa Eskelinen
    Centre for High Resolution Imaging and Processing, MSI WTB complex, University of Dundee, School of Life Sciences, Dundee DD1 5EH, Scotland
    Traffic 3:878-93. 2002
    ..Our results show that autophagy is under strict mitotic control and indicate a novel role for phosphoinositide 3-kinases or other wortmannin/LY294002-sensitive kinases in mitotic membrane traffic regulation...
  33. ncbi Phosphoinositide 3-kinase p110beta activity: key role in metabolism and mammary gland cancer but not development
    Elisa Ciraolo
    Department of Genetics, Biology and Biochemistry, Molecular Biotechnology Center, University of Torino, Via Nizza 52, 10126 Torino, Italy
    Sci Signal 1:ra3. 2008
    ..These findings indicate an unexpected role for p110beta catalytic activity in diabetes and cancer, opening potential avenues for therapeutic intervention...
  34. ncbi The atypical Rho family GTPase Wrch-1 regulates focal adhesion formation and cell migration
    Ya yu Chuang
    Center for Oncology and Cell Biology, The Feinstein Institute for Medical Research at North Shore LIJ, North Shore University Hospital, Manhasset, NY 11030, USA
    J Cell Sci 120:1927-34. 2007
    ..Thus, our data suggest that Wrch-1 regulates cell migration by multiple mechanisms: on the one hand Wrch-1 controls focal adhesions by regulating myosin light chain and on the other hand Wrch-1 stimulates the activation of Akt and JNK...
  35. ncbi Amino acids mediate mTOR/raptor signaling through activation of class 3 phosphatidylinositol 3OH-kinase
    Takahiro Nobukuni
    Friedrich Miescher Institute for Biomedical Research, Maulbeerstrasse 66, 4058 Basel, Switzerland
    Proc Natl Acad Sci U S A 102:14238-43. 2005
    ....
  36. ncbi Transforming growth factor beta activates Smad2 in the absence of receptor endocytosis
    Zhongxian Lu
    Division of Biomedical Sciences, University of California, Riverside, California 92521, USA
    J Biol Chem 277:29363-8. 2002
    ..Thus, our findings suggest that receptor endocytosis is dispersible for TGF-beta-mediated activation of Smad2 and that this activation can be mediated by both SARA-dependent and -independent mechanisms...
  37. ncbi Analysis of hVps34/hVps15 interactions with Rab5 in vivo and in vitro
    James T Murray
    Methods Enzymol 403:789-99. 2005
    ..This chapter describes the analysis of hVps34/hVps15 interactions with Rab5 in tissue culture cells and in vitro...
  38. ncbi Mechanism of two classes of cancer mutations in the phosphoinositide 3-kinase catalytic subunit
    Nabil Miled
    Medical Research Council Laboratory of Molecular Biology, Hills Road, Cambridge CB2 2QH, UK
    Science 317:239-42. 2007
    ..These studies extend our understanding of the architecture of PI3Ks and provide insight into how two classes of mutations that cause a gain in function can lead to cancer...
  39. ncbi The class III PI(3)K Vps34 promotes autophagy and endocytosis but not TOR signaling in Drosophila
    Gabor Juhasz
    Department of Genetics, Cell Biology, and Development, University of Minnesota, Minneapolis, MN 55455, USA
    J Cell Biol 181:655-66. 2008
    ..Our results suggest that Vps34 is regulated by TOR-dependent nutrient signals directly at sites of autophagosome formation...

Research Grants19

  1. p85/p110 PI3 Kinase-Structure, function and Physiology
    Jonathan M Backer; Fiscal Year: 2010
    ..Understanding the mechanisms that regulate their activity in normal and malignant cells is critical for the design of novel and specific drugs to target these enzymes in human disease. ..
  2. P85/p110 PI3 Kinase--Structure, Function and Physiology
    Jonathan Backer; Fiscal Year: 2009
    ..Completion of these aims will greatly increase our understanding of the p85/p110 PI 3-kinase, and lead to mechanistic insights into its activation in human cancer. ..
  3. Regulation and Function of hVps34 in Insulin Signaling
    Jonathan Backer; Fiscal Year: 2009
    ..Overall, these studies will have important implications for our understanding of the function and regulation of hVps34, and its role in insulin action and diabetes. ..
  4. P85/p110 PI3 Kinase--Structure, Function and Physiology
    Jonathan Backer; Fiscal Year: 2007
    ..Completion of these aims will greatly increase our understanding of the p85/p110 PI 3-kinase, and lead to mechanistic insights into its activation in human cancer. ..
  5. Regulation and Function of hVps34 in Insulin Signaling
    Jonathan Backer; Fiscal Year: 2007
    ..Overall, these studies will have important implications for our understanding of the function and regulation of hVps34, and its role in insulin action and diabetes. ..
  6. P85/p110 PI3 Kinase--Structure, Function and Physiology
    Jonathan Backer; Fiscal Year: 2006
    ..Completion of these aims will greatly increase our understanding of the p85/p110 PI 3-kinase, and lead to mechanistic insights into its activation in human cancer. ..
  7. P85/p110 PI3 Kinase--Structure, Function and Physiology
    Jonathan Backer; Fiscal Year: 2004
    ..Successful completion of these experiments will substantially advance our understanding of signal transduction by this critical and physiologically important signaling enzyme. ..
  8. Regulation and Function of hVps34 in Insulin Signaling
    Jonathan M Backer; Fiscal Year: 2010
    ..Overall, these studies will have important implications for our understanding of the function and regulation of hVps34, and its role in insulin action and diabetes. ..