David L Hyten

Summary

Affiliation: Agricultural Research Service
Country: USA

Publications

  1. ncbi High-throughput SNP discovery through deep resequencing of a reduced representation library to anchor and orient scaffolds in the soybean whole genome sequence
    David L Hyten
    Soybean Genomics and Improvement Laboratory, US Department of Agriculture, Agricultural Research Service, Beltsville, MD 20705, USA
    BMC Genomics 11:38. 2010
  2. ncbi High-throughput genotyping with the GoldenGate assay in the complex genome of soybean
    David L Hyten
    Soybean Genomics and Improvement Laboratory, US Department of Agriculture, Agricultural Research Service, Beltsville, MD 20705, USA
    Theor Appl Genet 116:945-52. 2008
  3. ncbi High-throughput SNP discovery and assay development in common bean
    David L Hyten
    Soybean Genomics and Improvement Laboratory, US Department of Agriculture, Agricultural Research Service, Beltsville, Maryland 20705, USA
    BMC Genomics 11:475. 2010
  4. ncbi Highly variable patterns of linkage disequilibrium in multiple soybean populations
    David L Hyten
    Soybean Genomics and Improvement Laboratory, U S Department of Agriculture, Agricultural Research Service, Beltsville, Maryland 20705, USA
    Genetics 175:1937-44. 2007
  5. ncbi A soybean transcript map: gene distribution, haplotype and single-nucleotide polymorphism analysis
    Ik Young Choi
    Soybean Genomics and Improvement Laboratory, USDA, ARS, Beltsville, Maryland 20705, USA
    Genetics 176:685-96. 2007
  6. ncbi SNP-PHAGE--High throughput SNP discovery pipeline
    Lakshmi K Matukumalli
    US Department of Agriculture, ARS, Beltsville Agricultural Research Center, Bovine Functional Genomics Laboratory, Beltsville, MD 20705, USA
    BMC Bioinformatics 7:468. 2006
  7. ncbi Impacts of genetic bottlenecks on soybean genome diversity
    David L Hyten
    Soybean Genomics and Improvement Laboratory, U.S. Department of Agriculture, Agricultural Research Service, Beltsville, MD 20705, USA
    Proc Natl Acad Sci U S A 103:16666-71. 2006
  8. ncbi Application of machine learning in SNP discovery
    Lakshmi K Matukumalli
    Beltsville Agricultural Research Center, Bovine Functional Genomics Laboratory, US Department of Agriculture, ARS, Beltsville, MD 20705, USA
    BMC Bioinformatics 7:4. 2006

Collaborators

Detail Information

Publications8

  1. ncbi High-throughput SNP discovery through deep resequencing of a reduced representation library to anchor and orient scaffolds in the soybean whole genome sequence
    David L Hyten
    Soybean Genomics and Improvement Laboratory, US Department of Agriculture, Agricultural Research Service, Beltsville, MD 20705, USA
    BMC Genomics 11:38. 2010
    ....
  2. ncbi High-throughput genotyping with the GoldenGate assay in the complex genome of soybean
    David L Hyten
    Soybean Genomics and Improvement Laboratory, US Department of Agriculture, Agricultural Research Service, Beltsville, MD 20705, USA
    Theor Appl Genet 116:945-52. 2008
    ..The high success rate of the GoldenGate assay makes this a useful technique for quickly creating high density genetic maps in species where SNP markers are rapidly becoming available...
  3. ncbi High-throughput SNP discovery and assay development in common bean
    David L Hyten
    Soybean Genomics and Improvement Laboratory, US Department of Agriculture, Agricultural Research Service, Beltsville, Maryland 20705, USA
    BMC Genomics 11:475. 2010
    ..To this end we developed a method which couples sequences obtained from the Roche 454-FLX system (454) with the Illumina Genome Analyzer (GA) for high-throughput SNP discovery...
  4. ncbi Highly variable patterns of linkage disequilibrium in multiple soybean populations
    David L Hyten
    Soybean Genomics and Improvement Laboratory, U S Department of Agriculture, Agricultural Research Service, Beltsville, Maryland 20705, USA
    Genetics 175:1937-44. 2007
    ..G. soja appears to be ideal for fine mapping of genes, but due to the highly variable levels of LD in the Landraces and the Elite Cultivars, whole-genome association analysis in soybean may be more difficult than first anticipated...
  5. ncbi A soybean transcript map: gene distribution, haplotype and single-nucleotide polymorphism analysis
    Ik Young Choi
    Soybean Genomics and Improvement Laboratory, USDA, ARS, Beltsville, Maryland 20705, USA
    Genetics 176:685-96. 2007
    ....
  6. ncbi SNP-PHAGE--High throughput SNP discovery pipeline
    Lakshmi K Matukumalli
    US Department of Agriculture, ARS, Beltsville Agricultural Research Center, Bovine Functional Genomics Laboratory, Beltsville, MD 20705, USA
    BMC Bioinformatics 7:468. 2006
    ..Although these tasks are routinely performed by several groups, an integrated open source SNP discovery pipeline that can be easily adapted by new groups interested in SNP marker development is currently unavailable...
  7. ncbi Impacts of genetic bottlenecks on soybean genome diversity
    David L Hyten
    Soybean Genomics and Improvement Laboratory, U.S. Department of Agriculture, Agricultural Research Service, Beltsville, MD 20705, USA
    Proc Natl Acad Sci U S A 103:16666-71. 2006
    ....
  8. ncbi Application of machine learning in SNP discovery
    Lakshmi K Matukumalli
    Beltsville Agricultural Research Center, Bovine Functional Genomics Laboratory, US Department of Agriculture, ARS, Beltsville, MD 20705, USA
    BMC Bioinformatics 7:4. 2006
    ..ML methods have also been successfully applied to other bioinformatics problems in predicting genes, promoters, transcription factor binding sites and protein structures...