Research Topics
| Guoying LiuSummaryAffiliation: Affymetrix Inc Country: USA Publications
| Collaborators
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Detail Information
Publications
Description of the data from the Collaborative Study on the Genetics of Alcoholism (COGA) and single-nucleotide polymorphism genotyping for Genetic Analysis Workshop 14Howard J Edenberg
Department of Biochemistry and Molecular Biology, Indiana University School of Medicine, 635 Barnhill Drive, Indianapolis, IN, USA
BMC Genet 6:S2. 2005..CIDR, Affymetrix, and Illumina provided single-nucleotide polymorphism genotyping of a large subset of the COGA subjects. This article briefly describes the dataset that was provided...- NetAffx: Affymetrix probesets and annotationsGuoying Liu
Department of Bioinformatics, Affymetrix, Inc, 6550 Vallejo Street, Suite 100, Emeryville, CA 94608, USA
Nucleic Acids Res 31:82-6. 2003.... - Genotyping over 100,000 SNPs on a pair of oligonucleotide arraysHajime Matsuzaki
Affymetrix, Inc, 3380 Central Expressway, Santa Clara, California 95051, USA
Nat Methods 1:109-11. 2004..7%. Average intermarker distance is 23.6 kb, and 92% of the genome is within 100 kb of a SNP marker. Average heterozygosity is 0.30, with 105,511 SNPs having minor allele frequencies >5%... - CARAT: a novel method for allelic detection of DNA copy number changes using high density oligonucleotide arraysJing Huang
Affymetrix, Inc, 3420 Central Expressway, Santa Clara, CA 95051, USA
BMC Bioinformatics 7:83. 2006..The ability to accurately detect these changes is central to understanding how they impact the biology of the cell... - Dynamic model based algorithms for screening and genotyping over 100 K SNPs on oligonucleotide microarraysXiaojun Di
Affymetrix, Inc, Santa Clara, CA 95051, USA
Bioinformatics 21:1958-63. 2005.... - Algorithms for large-scale genotyping microarraysWei mn Liu
Affymetrix, Inc, 3380 Central Expressway, Santa Clara, CA 95051, USA
Bioinformatics 19:2397-403. 2003..High density oligonucleotide microarrays provide the possibility for such analysis with reasonable cost. Such analysis requires accurate, reliable methods for feature extraction, classification, statistical modeling and filtering... - NetAffx Gene Ontology Mining Tool: a visual approach for microarray data analysisJill Cheng
Affymetrix Corporation, Bioinformatics, 6550 Vallejo Street, Suite 100, Emeryville, CA 94608, USA
Bioinformatics 20:1462-3. 2004..AVAILABILITY: GO Mining Tool is freely available at http://www.affymetrix.com/analysis/query/go_analysis.affx.. - Improved detection of global copy number variation using high density, non-polymorphic oligonucleotide probesFan Shen
Affymetrix, Inc, 3420 Central Expressway Santa Clara, CA 95051, USA
BMC Genet 9:27. 2008.... - Parallel genotyping of over 10,000 SNPs using a one-primer assay on a high-density oligonucleotide arrayHajime Matsuzaki
Affymetrix, Inc, Santa Clara, California 95051, USA
Genome Res 14:414-25. 2004.... - MARA: a novel approach for highly multiplexed locus-specific SNP genotyping using high-density DNA oligonucleotide arraysMichael H Shapero
Affymetrix, Inc, Genotyping Research, 3380 Central Expressway, Santa Clara, CA 95051, USA
Nucleic Acids Res 32:e181. 2004.... - A genome-wide linkage analysis of alcoholism on microsatellite and single-nucleotide polymorphism data, using alcohol dependence phenotypes and electroencephalogram measuresChun Zhang
Genomics Collaborations Department, Affymetrix, Santa Clara, CA 95051, USA
BMC Genet 6:S17. 2005..Adding the microsatellite data to the combined SNP dataset improved the results only marginally. The results indicated that SNPs outperform microsatellites with the densest marker sets performing the best... - Whole genome DNA copy number changes identified by high density oligonucleotide arraysJing Huang
Affymetrix, Inc, 3380 Central Expressway, Santa Clara, CA 95051, USA
Hum Genomics 1:287-99. 2004..With mean and median inter-SNP euchromatin distances of 244 kilobases (kb) and 119 kb, respectively, this method affords a resolution that is not easily achievable with non-oligonucleotide-based experimental approaches... - Large-scale genotyping of complex DNAGiulia C Kennedy
Affymetrix, 3380 Central Expressway, Santa Clara, California 95051, USA
Nat Biotechnol 21:1233-7. 2003..We also determined the ancestral allele for 8,386 SNPs by genotyping chimpanzee and gorilla DNA. WGSA is highly scaleable and enables the creation of ultrahigh density SNP maps for use in genetic studies... - GPCR-GRAPA-LIB--a refined library of hidden Markov Models for annotating GPCRsRon Shigeta
Affymetrix Corporation, Bioinformatics, 6550 Vallejo Street, Suite 100 Emeryville, CA 94608, USA
Bioinformatics 19:667-8. 2003..Protein sequences are applied to the models with the GRAPA curve-based selection criteria. RefSeq sequences for Homo sapiens, Drosophila melanogaster, and Caenorhabditis elegans have been annotated using this approach... - Whole-genome scan, in a complex disease, using 11,245 single-nucleotide polymorphisms: comparison with microsatellitesSally John
University of Manchester, Manchester, United Kingdom
Am J Hum Genet 75:54-64. 2004..The high SNP density allows loci to be defined more precisely and provides a partial scaffold for association studies, substantially reducing the resource requirement for gene-mapping studies... - A whole genome long-range haplotype (WGLRH) test for detecting imprints of positive selection in human populationsChun Zhang
Affymetrix Inc, 3380 Central Expressway, Santa Clara, CA 95051, USA
Bioinformatics 22:2122-8. 2006..AVAILABILITY: the programs for the WGLRH algorithm are freely available and can be downloaded at http://www.affymetrix.com/support/supplement/WGLRH_program.zip... - Genome-wide detection of human copy number variations using high-density DNA oligonucleotide arraysDaisuke Komura
Research Center for Advanced Science and Technology, The University of Tokyo, Meguro, Tokyo 153-8904, Japan
Genome Res 16:1575-84. 2006....