Benjamin Schuster-Böckler

Summary

Affiliation: Wellcome Trust Genome Campus
Country: UK

Publications

  1. ncbi Visualizing profile-profile alignment: pairwise HMM logos
    Benjamin Schuster-Böckler
    The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK
    Bioinformatics 21:2912-3. 2005
  2. ncbi Reuse of structural domain-domain interactions in protein networks
    Benjamin Schuster-Böckler
    Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, UK
    BMC Bioinformatics 8:259. 2007
  3. ncbi Protein interactions in human genetic diseases
    Benjamin Schuster-Böckler
    Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, CB10 1SA, UK
    Genome Biol 9:R9. 2008
  4. ncbi Pfam: clans, web tools and services
    Robert D Finn
    Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SA, UK
    Nucleic Acids Res 34:D247-51. 2006
  5. ncbi An introduction to hidden Markov models
    Benjamin Schuster-Böckler
    Wellcome Trust Sanger Institute, Hinxton, Cambridge, United Kingdom
    Curr Protoc Bioinformatics . 2007

Detail Information

Publications5

  1. ncbi Visualizing profile-profile alignment: pairwise HMM logos
    Benjamin Schuster-Böckler
    The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK
    Bioinformatics 21:2912-3. 2005
    ..sanger.ac.uk/Software/analysis/logomat-p. Furthermore, software developers may download a Perl package that includes methods for creation of pairwise HMM logos locally. CONTACT: bsb@sanger.ac.uk...
  2. ncbi Reuse of structural domain-domain interactions in protein networks
    Benjamin Schuster-Böckler
    Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, UK
    BMC Bioinformatics 8:259. 2007
    ..Here, we investigate how the domain interactions from the iPfam database are distributed in protein interactions taken from the HPRD, MPact, BioGRID, DIP and IntAct databases...
  3. ncbi Protein interactions in human genetic diseases
    Benjamin Schuster-Böckler
    Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, CB10 1SA, UK
    Genome Biol 9:R9. 2008
    ..Combining predicted and hand-curated sets, we discuss how mutations affect protein interactions in general...
  4. ncbi Pfam: clans, web tools and services
    Robert D Finn
    Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SA, UK
    Nucleic Acids Res 34:D247-51. 2006
    ..Pfam is available on the web in the UK (http://www.sanger.ac.uk/Software/Pfam/), the USA (http://pfam.wustl.edu/), France (http://pfam.jouy.inra.fr/) and Sweden (http://pfam.cgb.ki.se/)...
  5. ncbi An introduction to hidden Markov models
    Benjamin Schuster-Böckler
    Wellcome Trust Sanger Institute, Hinxton, Cambridge, United Kingdom
    Curr Protoc Bioinformatics . 2007
    ..The unit also presents a brief history of hidden Markov models and an overview of their current applications before concluding with a discussion of their limitations...