Jun Zhao

Summary

Affiliation: University of Oxford
Country: UK

Publications

  1. ncbi The Translational Medicine Ontology and Knowledge Base: driving personalized medicine by bridging the gap between bench and bedside
    Joanne S Luciano
    Rensselaer Polytechnic Institute, Troy, NY, USA
    J Biomed Semantics 2:S1. 2011
  2. ncbi Integrating findings of traditional medicine with modern pharmaceutical research: the potential role of linked open data
    Matthias Samwald
    Digital Enterprise Research Institute, National University of Ireland Galway, IDA Business Park, Lower Dangan, Galway, Ireland
    Chin Med 5:43. 2010
  3. ncbi A journey to Semantic Web query federation in the life sciences
    Kei Hoi Cheung
    Center for Medical Informatics, Yale University School of Medicine, New Haven, CT 06511, USA
    BMC Bioinformatics 10:S10. 2009
  4. ncbi Linked data and provenance in biological data webs
    Jun Zhao
    Image Bioinformatics Research Group, Department of Zoology, University of Oxford, The Tinbergen Building, South Parks Road, Oxford, OX1 3PS, UK
    Brief Bioinform 10:139-52. 2009
  5. ncbi Publishing Chinese medicine knowledge as Linked Data on the Web
    Jun Zhao
    Image Bioinformatics Research Group, Department of Zoology, Oxford University, South Parks Road, Oxford, OX1 3PS, UK
    Chin Med 5:27. 2010
  6. ncbi OpenFlyData: an exemplar data web integrating gene expression data on the fruit fly Drosophila melanogaster
    Alistair Miles
    Department of Zoology, University of Oxford, Oxford OX1 3PS, UK
    J Biomed Inform 43:752-61. 2010
  7. ncbi FlyTED: the Drosophila Testis Gene Expression Database
    Jun Zhao
    Department of Zoology, University of Oxford, South Parks Road, Oxford OX1 3PS, UK
    Nucleic Acids Res 38:D710-5. 2010

Collaborators

  • David Shotton
  • Helen White-Cooper
  • Matthias Samwald
  • Joanne S Luciano
  • Michel Dumontier
  • Alistair Miles
  • Eric Prud'hommeaux
  • Kei Hoi Cheung
  • Olivier Bodenreider
  • Thomas Gambet
  • James P McCusker
  • Christopher Domarew
  • Lynn Schriml
  • Susie Stephens
  • Tim Clark
  • Timothy Lebo
  • Vipul Kashyap
  • Patricia L Whetzel
  • Christine K Denney
  • Anja Jentzsch
  • Bosse Andersson
  • Péter Kós
  • Deborah L McGuinness
  • Lee Harland
  • Elgar Pichler
  • Colin Batchelor
  • Chimezie Ogbuji
  • Peter J Tonellato
  • Scott M Marshall
  • Robert L Powers
  • Julia Kozlovsky
  • Graham Klyne
  • Kei Cheung
  • Michael Scott Marshall
  • M Scott Marshall
  • H Robert Frost
  • Adrian Paschke

Detail Information

Publications7

  1. ncbi The Translational Medicine Ontology and Knowledge Base: driving personalized medicine by bridging the gap between bench and bedside
    Joanne S Luciano
    Rensselaer Polytechnic Institute, Troy, NY, USA
    J Biomed Semantics 2:S1. 2011
    ..Here, we describe a collaborative effort to produce a prototype Translational Medicine Knowledge Base (TMKB) capable of answering questions relating to clinical practice and pharmaceutical drug discovery...
  2. ncbi Integrating findings of traditional medicine with modern pharmaceutical research: the potential role of linked open data
    Matthias Samwald
    Digital Enterprise Research Institute, National University of Ireland Galway, IDA Business Park, Lower Dangan, Galway, Ireland
    Chin Med 5:43. 2010
    ..The approach is based on our initial experiences with implementing an integrated web of data for a selected use-case, i.e., the identification of plant species used in Chinese medicine that indicate potential antidepressant activities...
  3. ncbi A journey to Semantic Web query federation in the life sciences
    Kei Hoi Cheung
    Center for Medical Informatics, Yale University School of Medicine, New Haven, CT 06511, USA
    BMC Bioinformatics 10:S10. 2009
    ....
  4. ncbi Linked data and provenance in biological data webs
    Jun Zhao
    Image Bioinformatics Research Group, Department of Zoology, University of Oxford, The Tinbergen Building, South Parks Road, Oxford, OX1 3PS, UK
    Brief Bioinform 10:139-52. 2009
    ....
  5. ncbi Publishing Chinese medicine knowledge as Linked Data on the Web
    Jun Zhao
    Image Bioinformatics Research Group, Department of Zoology, Oxford University, South Parks Road, Oxford, OX1 3PS, UK
    Chin Med 5:27. 2010
    ..In addition, most of CM knowledge published with relational database technology makes the integration of databases even more challenging...
  6. ncbi OpenFlyData: an exemplar data web integrating gene expression data on the fruit fly Drosophila melanogaster
    Alistair Miles
    Department of Zoology, University of Oxford, Oxford OX1 3PS, UK
    J Biomed Inform 43:752-61. 2010
    ..k.a. data web), using Semantic Web standards, promises to alleviate these difficulties, but little is known about the feasibility, costs, risks or practical means of migrating to such an infrastructure...
  7. ncbi FlyTED: the Drosophila Testis Gene Expression Database
    Jun Zhao
    Department of Zoology, University of Oxford, South Parks Road, Oxford OX1 3PS, UK
    Nucleic Acids Res 38:D710-5. 2010
    ..org/software/), and provides both web-based search and browse interfaces, and programmatic access via an SQL dump, OAI-PMH and SPARQL. FlyTED is available at http://www.fly-ted.org/...