Research Topics
Species | J Peter W YoungSummaryAffiliation: University of York Country: UK Publications
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Publications
The genetic diversity of intraterrestrial aliensJ Peter W Young
Department of Biology, University of York, PO Box 373, York YO10 5YW, UK
New Phytol 178:465-8. 2008- The genome of Rhizobium leguminosarum has recognizable core and accessory componentsJ Peter W Young
Department of Biology, University of York, York, UK
Genome Biol 7:R34. 2006..We have sequenced the genome of R. leguminosarum biovar viciae strain 3841... - Real-time PCR and microscopy: are the two methods measuring the same unit of arbuscular mycorrhizal fungal abundance?Hannes A Gamper
University of York, Department of Biology, P O Box 373, Heslington, York YO10 5YW, UK
Fungal Genet Biol 45:581-96. 2008..Therefore, although real-time PCR can reproducibly and accurately quantify AMF nucleic acids, these are poorly correlated with visual measures because of spatial heterogeneity... - The mitochondrial genome sequence of the arbuscular mycorrhizal fungus Glomus intraradices isolate 494 and implications for the phylogenetic placement of GlomusJaikoo Lee
Department of Biology, University of York, York, UK
New Phytol 183:200-11. 2009..There is no evidence of substantial sequence variation. * A well-supported phylogeny based on 14 mitochondrially encoded proteins indicates that the Glomeromycota are not the sister group of the Dikarya... - Burkholderia species are ancient symbionts of legumesCyril Bontemps
Department of Biology, University of York, PO Box 373, York YO10 5YW, England, UK
Mol Ecol 19:44-52. 2010.... - Diversity and specificity of Rhizobium leguminosarum biovar viciae on wild and cultivated legumesLesley A Mutch
Department of Biology (Area 3, University of York, PO Box 373, York YO10 5YW, UK
Mol Ecol 13:2435-44. 2004..The crop species are less promiscuous in their interaction with symbionts than the wild legumes... - The NfeD protein family and its conserved gene neighbours throughout prokaryotes: functional implications for stomatin-like proteinsJasper B Green
Department of Biology, University of York, York, UK
J Mol Evol 69:657-67. 2009..Although NfeD homologues are confined to prokaryotes, this conserved association could represent an excellent system to study slipin and flotillin proteins... - Recurrent outbreaks of root mat in cucumber and tomato are associated with a monomorphic, cucumopine, Ri-plasmid harboured by various AlphaproteobacteriaSimon A Weller
Central Science Laboratory, DEFRA, Sand Hutton, York, UK
FEMS Microbiol Lett 258:136-43. 2006..Two other pRi, harboured by Agrobacterium isolated from a recent root mat outbreak in one tomato crop, were also shown to possess the GALLS gene but were shown not to be cucumopine pRi by PCR-RFLP... - Population genomics of Sinorhizobium medicae based on low-coverage sequencing of sympatric isolatesXavier Bailly
Department of Biology, University of York, York, UK
ISME J 5:1722-34. 2011..These results are discussed in relation to the ecology of Medicago symbionts and in the perspective of population genomics studies... - Improved PCR primers for the detection and identification of arbuscular mycorrhizal fungiJaikoo Lee
Korea National University of Education, Chungbuk, Korea
FEMS Microbiol Ecol 65:339-49. 2008..Sequences amplified from roots using the new primers were compared with those obtained using the established NS31 and AM1 primer combination. The new primers have much better specificity and coverage of all known AMF groups... - Slipins: ancient origin, duplication and diversification of the stomatin protein familyJasper B Green
Department of Biology, University of York, UK
BMC Evol Biol 8:44. 2008..Despite being associated with a variety of diseases such as cancer, kidney failure and anaemia, precise functions of these proteins remain unclear... - Identification of roots from grass swards using PCR-RFLP and FFLP of the plastid trnL (UAA) intronKaryn P Ridgway
Department of Biology, University of York, YO10 5YW, UK
BMC Ecol 3:8. 2003..A molecular technique to identify plant species from root DNA would greatly facilitate investigations of the root rhizosphere... - What does a bacterial genome sequence represent? Mis-assignment of MAFF 303099 to the genospecies Mesorhizobium lotiSarah L Turner
Department of Biology, University of York, PO Box 373, York YO10 5YW, UK
Microbiology 148:3330-1. 2002 - Phylogeny of the Glomerales and Diversisporales (fungi: Glomeromycota) from actin and elongation factor 1-alpha sequencesThorunn Helgason
Department of Biology, PO Box 373, University of York, York, YO10 5YW, UK
FEMS Microbiol Lett 229:127-32. 2003..Joint phylogenetic analysis of the actin and EF1-alpha sequences suggested that the sister group to the AM fungi was a Zygomycete order, the Mortierellales... - Introducing the bacterial 'chromid': not a chromosome, not a plasmidPeter W Harrison
Department of Biology, University of York, PO Box 373, York YO10 5YW, UK
Trends Microbiol 18:141-8. 2010..Chromids seem particularly rich in genus-specific genes and appear to be 'reinvented' at the origin of a new genus... - Extensive fungal diversity in plant rootsPhilippe Vandenkoornhuyse
Department of Biology, University of York, Post Office Box 373, York, YO10 5YW, UK
Science 295:2051. 2002 - Relationship between assemblages of mycorrhizal fungi and bacteria on grass rootsBrajesh K Singh
Macaulay Institute, Craigiebuckler, Aberdeen AB15 8QH, UK
Environ Microbiol 10:534-41. 2008.... - Nonlegumes, legumes, and root nodules harbor different arbuscular mycorrhizal fungal communitiesTanja R Scheublin
Department of Systems Ecology, FALW, Vrije Universiteit, De Boelelaan 1087, 1081 HV Amsterdam, The Netherlands
Appl Environ Microbiol 70:6240-6. 2004..In summary, we found that AMF communities vary between plant functional groups (legumes and nonlegumes), between plant species, and between parts of a root system (roots and root nodules)... - Mesorhizobium septentrionale sp. nov. and Mesorhizobium temperatum sp. nov., isolated from Astragalus adsurgens growing in the northern regions of ChinaJun-Lian Gao
Key Laboratory of Agro-Microbial Resources and Application, Ministry of Agriculture of China, College of Biological Sciences, China Agricultural University, Beijing 100094, China
Int J Syst Evol Microbiol 54:2003-12. 2004..Host range studies indicate that the different nodA sequences correlate with different host ranges. Further comparative studies with the defined Agrobacterium species are needed to clarify the taxonomic identity of candidate species III... - Proof that Burkholderia strains form effective symbioses with legumes: a study of novel Mimosa-nodulating strains from South AmericaWen-Ming Chen
Laboratory of Microbiology, Department of Seafood Science, National Kaohsiung Marine University, Kaohsiung City, Taiwan
Appl Environ Microbiol 71:7461-71. 2005.... - Burkholderia sabiae sp. nov., isolated from root nodules of Mimosa caesalpiniifoliaWen Ming Chen
Laboratory of Microbiology, Department of Seafood Science, National Kaohsiung Marine University, 142 Hai Chuan Rd, Nan Tzu, Kaohsiung City 811, Taiwan
Int J Syst Evol Microbiol 58:2174-9. 2008..nov. is proposed. The type strain is strain Br3407(T) (=LMG 24235(T) =BCRC 17587(T))... - Diversity and persistence of arbuscular mycorrhizas in a low-Arctic meadow habitatAnne Pietikäinen
Department of Biology, PO Box 3000, FIN 90014 University of Oulu, Oulu, Finland
New Phytol 176:691-8. 2007..This ability buffers the AM fungal community against short-term changes in host plant community composition and diversity... - A common genomic framework for a diverse assembly of plasmids in the symbiotic nitrogen fixing bacteriaLisa C Crossman
The Wellcome Trust Sanger Institute, Hinxton, Cambridge, United Kingdom
PLoS ONE 3:e2567. 2008..The present analysis allows us to conclude that a heterogeneous and quickly diversifying group of plasmids co-exists in a common genomic framework... - Nodulation of Cyclopia spp. (Leguminosae, Papilionoideae) by Burkholderia tuberumGeoffrey N Elliott
College of Life Sciences, University of Dundee, Dundee DD1 5EH, UK
Ann Bot 100:1403-11. 2007.... - Active root-inhabiting microbes identified by rapid incorporation of plant-derived carbon into RNAPhilippe Vandenkoornhuyse
Centre National de la Recherche Scientifique, Unité Mixte de Recherche UMR 6553 EcoBio, IFR90 FR2116, Centre Armoricain de Recherche sur l Environnement, Universite de Rennes I, Campus de Beaulieu, 35042 Rennes Cedex, France
Proc Natl Acad Sci U S A 104:16970-5. 2007..The results presented here reveal the possibility of uncharacterized root symbioses... - The role of ecological theory in microbial ecologyJames I Prosser
School of Biological Sciences, University of Aberdeen, Aberdeen AB24 3UU, Scotland, UK
Nat Rev Microbiol 5:384-92. 2007..Here we argue that the full potential of the ongoing revolution will not be realized if research is not directed and driven by theory, and that the generality of established ecological theory must be tested using microbial systems...