Research Topics
| Antoni R SlabasSummaryAffiliation: University of Durham Country: UK Publications
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Detail Information
Publications
Proteomic analysis of the heat shock response in Synechocystis PCC6803 and a thermally tolerant knockout strain lacking the histidine kinase 34 geneAntoni R Slabas
School of Biological and Biomedical Sciences, University of Durham, Durham, UK
Proteomics 6:845-64. 2006....
Plant glycerol-3-phosphate-1-acyltransferase (GPAT): structure selectivity studiesA R Slabas
Department of Biological Sciences, University of Durham, Science Laboratories, South Road, Durham DH1 3LE, UK
Biochem Soc Trans 28:677-9. 2000..The use of site-directed mutagenesis, coupled to three-dimensional structural determinations, should provide a rational basis for elucidating structural components important in determining the substrate selectivity of this enzyme...
Proteomic analysis of the Arabidopsis cell wall reveals unexpected proteins with new cellular locationsA R Slabas
School of Biological and Biomedical Sciences, University of Durham, Durham DH1 3LE, UK
Biochem Soc Trans 32:524-8. 2004..We discuss the presence of alternative non-classical secretory pathways in plants...
Investigations into the regulation of lipid biosynthesis in Brassica napus using antisense down-regulationA R Slabas
School of Biological and Biomedical Sciences, University of Durham, South Road, UK
Biochem Soc Trans 30:1056-9. 2002..These plants exhibit effects, not immediately predicted, on oil yield and carbon resource allocation in seeds...
Squash glycerol-3-phosphate (1)-acyltransferase. Alteration of substrate selectivity and identification of arginine and lysine residues important in catalytic activityAntoni R Slabas
Department of Biological and Biomedical Sciences, University of Durham, Science Laboratories, South Road, United Kingdom
J Biol Chem 277:43918-23. 2002..The mutant proteins retained the ability to bind stoichiometric quantities of acyl-ACPs supporting the potential role of these residues in glycerol 3-phosphate binding...
Proteomic analysis of differentially expressed proteins in fungal elicitor-treated Arabidopsis cell culturesStephen Chivasa
School of Biological and Biomedical Sciences, Durham University, Durham DH1 3LE, UK
J Exp Bot 57:1553-62. 2006..The findings, in combination with currently available microarray data, will form the basis of a filter to identify pivotal genes whose role in pathogen defence systems will require confirmation using gene knockout mutants...
Pathogen elicitor-induced changes in the maize extracellular matrix proteomeStephen Chivasa
School of Biological and Biomedical Sciences, University of Durham, South Road, Durham DH1 3LE, UK
Proteomics 5:4894-904. 2005..We discuss the role of the extracellular matrix in signal modulation during pathogen-induced defence responses...
Proteomic analysis of changes in the extracellular matrix of Arabidopsis cell suspension cultures induced by fungal elicitorsBongani K Ndimba
School of Biological and Biomedical Sciences, University of Durham, Durham, UK
Proteomics 3:1047-59. 2003....
Extracellular ATP is a regulator of pathogen defence in plantsStephen Chivasa
Creative Gene Technology Ltd, The Integrative Cell Biology Laboratory, Durham University, Durham DH1 3LE, UK
Plant J 60:436-48. 2009..Our study reveals a previously unsuspected role for eATP as a negative regulator of defensive signal transduction and demonstrates its importance as a key signal integrating defence and cell viability in plants...
Tandem affinity purification tagging of fatty acid biosynthetic enzymes in Synechocystis sp. PCC6803 and Arabidopsis thalianaAdrian P Brown
School of Biological and Biomedical Sciences, University of Durham, Science Laboratories, South Road, Durham DH1 3LE, UK
J Exp Bot 57:1563-71. 2006..Here, the development of the tandem affinity purification method, its modification, and its use in plants is described and the experimental results achieved so far are reported...
Candida yeast long chain fatty alcohol oxidase is a c-type haemoprotein and plays an important role in long chain fatty acid metabolismQi Cheng
Department of Biological and Biomedical Sciences, University of Durham, South Road, Durham DH1 3LE, UK
Biochim Biophys Acta 1735:192-203. 2005..tropicalis resulting in its inability to grow on oleic acid and hexadecane. The mutations demonstrate that different pathways of octadecane, hexadecane, oleic acid and palmitic acid utilisation exist in C. tropicalis...
Components of complex lipid biosynthetic pathways in developing castor (Ricinus communis) seeds identified by MudPIT analysis of enriched endoplasmic reticulumAdrian P Brown
School of Biological and Biomedical Sciences, University of Durham, South Road, Durham, DH1 3LE, United Kingdom
J Proteome Res 10:3565-77. 2011..These data provide important information for further manipulation of ricinoleic acid content in oilseeds and peptide data for future quantification strategies...
Proteomic analysis of extracellular ATP-regulated proteins identifies ATP synthase beta-subunit as a novel plant cell death regulatorStephen Chivasa
School of Biological and Biomedical Sciences, Durham University, Durham DH1 3LE, United Kingdom
Mol Cell Proteomics 10:M110.003905. 2011..More significantly, this protein is a novel target for extracellular ATP in its function as a key negative regulator of plant cell death...
Proteomic study of the soluble proteins from the unicellular cyanobacterium Synechocystis sp. PCC6803 using automated matrix-assisted laser desorption/ionization-time of flight peptide mass fingerprintingWilliam J Simon
School of Biological and Biomedical Sciences, University of Durham, Durham, UK
Proteomics 2:1735-42. 2002....
Kinetic mechanism and order of substrate binding for sn-glycerol-3-phosphate acyltransferase from squash (Cucurbita moschata)Matthew W Hayman
The University of Durham, Department of Biological Sciences, Science Laboratories, South Road, Durham DH1 3LE, UK
FEBS Lett 514:281-4. 2002..We have also determined that the reaction will proceed with C(4:0)-CoA, C(6:0)-CoA and C(12:0)-ACP substrates, allowing a wider choice of acyl groups for future co-crystallisation studies...
Antisense expression of 3-oxoacyl-ACP reductase affects whole plant productivity and causes collateral changes in activity of fatty acid synthase componentsAntoni R Slabas
School of Biological and Biomedical Sciences, Durham University, South Road, Durham DH1 3LE, UK
Plant Cell Physiol 48:736-44. 2007..The reduction in activity of KR was mirrored for a second fatty acid synthase component, enoyl-ACP reductase, indicating a mechanism to maintain the ratio of fatty acid synthase components throughout embryogenesis...
Differential proteomic analysis using iTRAQ reveals changes in thylakoids associated with Photosystem II-acquired thermotolerance in Synechocystis sp. PCC 6803John G Rowland
School of Biological and Biomedical Sciences, University of Durham, Durham, UK
Proteomics 10:1917-29. 2010..The possible biological importance of these changes is discussed...
The effects of extracellular adenosine 5'-triphosphate on the tobacco proteomeStephen Chivasa
Creative Gene Technology Ltd, The Integrative Cell Biology Laboratory, Durham, UK
Proteomics 10:235-44. 2010....
Differential proteomic analysis of the endoplasmic reticulum from developing and germinating seeds of castor (Ricinus communis) identifies seed protein precursors as significant components of the endoplasmic reticulumDaniel J Maltman
School of Biological and Biomedical Sciences, Durham University, Durham, UK
Proteomics 7:1513-28. 2007..Notably no proteins involved in complex lipid biosynthesis were identified in the urea soluble ER fraction indicating that they are probably all integral membrane proteins...
Isolation and fractionation of the endoplasmic reticulum from castor bean (Ricinus communis) endosperm for proteomic analysesWilliam J Simon
University of Durham, Durham, Great Britain
Methods Mol Biol 425:203-15. 2008....
Identification of components associated with thermal acclimation of photosystem II in Synechocystis sp. PCC6803John G Rowland
School of Biological and Biomedical Sciences, Durham University, Durham, United Kingdom
PLoS ONE 5:e10511. 2010..Thermal acclimation of this complex activity is likely to be critically important to the ability of photosynthetic organisms to tolerate temperature changes in the environment...
Proteomic analysis of the Arabidopsis thaliana cell wallStephen Chivasa
Creative Gene Technology Ltd, Integrative Cell Biology Laboratory, School of Biological and Biomedical Sciences, University of Durham, Durham, UK
Electrophoresis 23:1754-65. 2002..We discuss the implications of these findings and present results suggesting a possible involvement of cell wall kinases in plant responses to pathogen attack...
Fatty acid and lipid biosynthetic genes are expressed at constant molar ratios but different absolute levels during embryogenesisPaul O'Hara
Department of Biological Sciences, University of Durham, South Road, Durham DH1 3LE, United Kingdom
Plant Physiol 129:310-20. 2002..Girke, J. Todd, S. Ruuska, J. White, C. Benning, J. Ohlrogge [2000] Plant Physiol 124: 1570-1581) where similar leaf to seed levels of fatty acid synthase component mRNAs were reported...
Limnanthes douglasii lysophosphatidic acid acyltransferases: immunological quantification, acyl selectivity and functional replacement of the Escherichia coli plsC geneAdrian P Brown
Department of Biological Sciences, University of Durham, South Road, Durham DH1 3LE, UK
Biochem J 364:795-805. 2002..coli plsC gene after its deletion in the chromosome, whereas LAT1 and a coconut LPAAT (Coco1) cannot. This is probably due to differences in substrate utilization...
Ara12 subtilisin-like protease from Arabidopsis thaliana: purification, substrate specificity and tissue localizationJohn M U Hamilton
School of Biological and Biomedical Sciences, University of Durham, South Road, Durham DH1 3LE, UK
Biochem J 370:57-67. 2003..Possible functions of Ara12 are discussed in the light of the involvement of a number of plant subtilisin-like proteases in morphogenesis...
Extracellular ATP functions as an endogenous external metabolite regulating plant cell viabilityStephen Chivasa
Creative Gene Technology, Integrative Cell Biology Laboratory, School of Biological and Biomedical Sciences, University of Durham, Durham DH1 3LE, United Kingdom
Plant Cell 17:3019-34. 2005..These observations suggest that extracellular ATP suppresses a default death pathway in plants and that some forms of pathogen-induced cell death are mediated by the depletion of extracellular ATP...
Identification and functional expression of a type 2 acyl-CoA:diacylglycerol acyltransferase (DGAT2) in developing castor bean seeds which has high homology to the major triglyceride biosynthetic enzyme of fungi and animalsJohan T M Kroon
Integrative Cell Biology Laboratory, School of Biological and Biomedical Sciences, University of Durham, South Road, Durham DH1 3LE, United Kingdom
Phytochemistry 67:2541-9. 2006..In contrast, DGAT1 shows little difference in expression in seeds versus leaves. We conclude that in castor bean DGAT2 is more likely to play a major role in seed TAG biosynthesis than DGAT1...
Functional identification of AtFao3, a membrane bound long chain alcohol oxidase in Arabidopsis thalianaQi Cheng
Department of Biological Sciences, University of Durham, South Road, Durham DH1 3LE, UK
FEBS Lett 574:62-8. 2004..The protein has been solubilised and retains biological activity thereby preparing the way for crystallographic studies. This is the first functional proof identifying a long chain alcohol oxidase in higher plants...
Proteomics reveals a role for the RNA helicase crhR in the modulation of multiple metabolic pathways during cold acclimation of Synechocystis sp. PCC6803John G Rowland
School of Biological and Biomedical Sciences, Durham University, Durham DH1 3LE, United Kingdom
J Proteome Res 10:3674-89. 2011..54-0.70). We propose functions for three previously hypothetical proteins. We suggest molecular targets for CrhR action and identify downstream regulated events in metabolism...
Substrate selectivity of plant and microbial lysophosphatidic acid acyltransferasesAdrian P Brown
School of Biological and Biomedical Sciences, University of Durham, South Road, DH1 3LE, Durham, UK
Phytochemistry 61:493-501. 2002..These results show that, in the majority of species examined, there is no correlation between the final sn-2 composition of oil or membrane lipids and the ability of an LPA-AT to use 18:2 as a substrate in in vitro assays...
Proteomic analysis of the endoplasmic reticulum from developing and germinating seed of castor (Ricinus communis)Daniel J Maltman
Department of Biological Sciences, University of Durham, UK
Electrophoresis 23:626-39. 2002..More extensive analysis will have to await developments in genomics but the basic separation technologies to simplify sample identity for a plant ER preparation have been established...
Tissue-specific whole transcriptome sequencing in castor, directed at understanding triacylglycerol lipid biosynthetic pathwaysAdrian P Brown
School of Biological and Biomedical Sciences, Durham University, Durham, United Kingdom
PLoS ONE 7:e30100. 2012..Storage triacylglycerols in castor bean seeds are enriched in the hydroxylated fatty acid ricinoleate. Extensive tissue-specific RNA-Seq transcriptome and lipid analysis will help identify components important for its biosynthesis...
Plant extracellular ATP signalling: new insight from proteomicsStephen Chivasa
School of Biological and Biomedical Sciences, Durham University, Durham, United Kingdom
Mol Biosyst 8:445-52. 2012....
Identification of Arabidopsis salt and osmotic stress responsive proteins using two-dimensional difference gel electrophoresis and mass spectrometryBongani K Ndimba
Department of Biotechnology, University of the Western Cape, Bellville, Cape Town, South Africa
Proteomics 5:4185-96. 2005....
The histidine kinase Hik34 is involved in thermotolerance by regulating the expression of heat shock genes in synechocystisIwane Suzuki
Division of Cellular Regulation, National Institute for Basic Biology, Myodaiji, Okazaki 444 8585, Japan
Plant Physiol 138:1409-21. 2005..These results suggest that Hik34 might negatively regulate the expression of certain heat shock genes that might be related to thermotolerance in Synechocystis...
X-ray crystallographic studies on butyryl-ACP reveal flexibility of the structure around a putative acyl chain binding siteAnna Roujeinikova
Krebs Institute for Biomolecular Research, Department of Molecular Biology and Biotechnology, The University of Sheffield, S10 2TN, Sheffield, United Kingdom
Structure 10:825-35. 2002..In the other form, the cavity is contracted, and we propose that the protein has adopted the conformation after delivery of substrate into the active site of a partner enzyme...
The heat shock response of Synechocystis sp. PCC 6803 analysed by transcriptomics and proteomicsIwane Suzuki
Graduate School of Life and Environmental Sciences, University of Tsukuba, 1 1 1 Tennodai, Tsukuba shi Ibaraki ken 305 8572, Japan
J Exp Bot 57:1573-8. 2006..However, the level of elongation factors are mainly regulated at the protein level. These results indicated that acclimation to the heat-shock conditions might be governed by transcriptional and translational regulation in Synechocystis...
Structural studies of fatty acyl-(acyl carrier protein) thioesters reveal a hydrophobic binding cavity that can expand to fit longer substratesAnna Roujeinikova
Krebs Institute for Biomolecular Research, Department of Molecular Biology and Biotechnology, The University of Sheffield, Sheffield S10 2TN, UK
J Mol Biol 365:135-45. 2007....
Crystallization and preliminary X-ray crystallographic studies on acyl-(acyl carrier protein) from Escherichia coliAnna Roujeinikova
Krebs Institute for Biomolecular Research, Department of Molecular Biology and Biotechnology, The University of Sheffield, Sheffield S10 2TN, England
Acta Crystallogr D Biol Crystallogr 58:330-2. 2002..3, b = 41.9, c = 64.5 A. A data set suitable for MAD phasing was collected from the crystals of the I62M variant to 1.8 A resolution on the ESRF beamline ID14-4...
Proteomics: empowering systems biology in plantsG Paul Bolwell
Phytochemistry 65:1665-9. 2004
Evaluation of an in vitro model of androgen ablation and identification of the androgen responsive proteome in LNCaP cellsJohn G Rowland
Northern Institute for Cancer Research, University of Newcastle, Newcastle upon Tyne, UK
Proteomics 7:47-63. 2007..This rigorous, statistically supported study of androgen responses has provided a number of potential candidates for development as diagnostic/prognostic markers and drug targets...
