David Shotton

Summary

Affiliation: University of Oxford
Country: UK

Publications

  1. ncbi Issues in learning an ontology from text
    Christopher Brewster
    Aston Business School, Aston University, Aston Triangle, Birmingham, B4 7ET, UK
    BMC Bioinformatics 10:S1. 2009
  2. ncbi Variant antigenic peptide promotes cytotoxic T lymphocyte adhesion to target cells without cytotoxicity
    D M Shotton
    Department of Zoology, University of Oxford, South Parks Road, Oxford OX1 3PS, United Kingdom
    Proc Natl Acad Sci U S A 95:15571-6. 1998
  3. ncbi Adventures in semantic publishing: exemplar semantic enhancements of a research article
    David Shotton
    Image Bioinformatics Research Group, Department of Zoology, University of Oxford, Oxford, United Kingdom
    PLoS Comput Biol 5:e1000361. 2009
  4. ncbi CiTO, the Citation Typing Ontology
    David Shotton
    Image Bioinformatics Research Group, Department of Zoology, University of Oxford South Parks Road, Oxford OX1 3PS, UK
    J Biomed Semantics 1:S6. 2010
  5. ncbi OpenFlyData: an exemplar data web integrating gene expression data on the fruit fly Drosophila melanogaster
    Alistair Miles
    Department of Zoology, University of Oxford, Oxford OX1 3PS, UK
    J Biomed Inform 43:752-61. 2010
  6. ncbi FlyTED: the Drosophila Testis Gene Expression Database
    Jun Zhao
    Department of Zoology, University of Oxford, South Parks Road, Oxford OX1 3PS, UK
    Nucleic Acids Res 38:D710-5. 2010
  7. ncbi Linked data and provenance in biological data webs
    Jun Zhao
    Image Bioinformatics Research Group, Department of Zoology, University of Oxford, The Tinbergen Building, South Parks Road, Oxford, OX1 3PS, UK
    Brief Bioinform 10:139-52. 2009

Collaborators

Detail Information

Publications7

  1. ncbi Issues in learning an ontology from text
    Christopher Brewster
    Aston Business School, Aston University, Aston Triangle, Birmingham, B4 7ET, UK
    BMC Bioinformatics 10:S1. 2009
    ..We describe some of the challenges, especially that of focusing the ontology appropriately given a starting point of a heterogeneous corpus...
  2. ncbi Variant antigenic peptide promotes cytotoxic T lymphocyte adhesion to target cells without cytotoxicity
    D M Shotton
    Department of Zoology, University of Oxford, South Parks Road, Oxford OX1 3PS, United Kingdom
    Proc Natl Acad Sci U S A 95:15571-6. 1998
    ....
  3. ncbi Adventures in semantic publishing: exemplar semantic enhancements of a research article
    David Shotton
    Image Bioinformatics Research Group, Department of Zoology, University of Oxford, Oxford, United Kingdom
    PLoS Comput Biol 5:e1000361. 2009
    ....
  4. ncbi CiTO, the Citation Typing Ontology
    David Shotton
    Image Bioinformatics Research Group, Department of Zoology, University of Oxford South Parks Road, Oxford OX1 3PS, UK
    J Biomed Semantics 1:S6. 2010
    ..stanford.edu/). Collaborative work is currently under way to harmonize CiTO with other ontologies describing bibliographies and the rhetorical structure of scientific discourse...
  5. ncbi OpenFlyData: an exemplar data web integrating gene expression data on the fruit fly Drosophila melanogaster
    Alistair Miles
    Department of Zoology, University of Oxford, Oxford OX1 3PS, UK
    J Biomed Inform 43:752-61. 2010
    ..k.a. data web), using Semantic Web standards, promises to alleviate these difficulties, but little is known about the feasibility, costs, risks or practical means of migrating to such an infrastructure...
  6. ncbi FlyTED: the Drosophila Testis Gene Expression Database
    Jun Zhao
    Department of Zoology, University of Oxford, South Parks Road, Oxford OX1 3PS, UK
    Nucleic Acids Res 38:D710-5. 2010
    ..org/software/), and provides both web-based search and browse interfaces, and programmatic access via an SQL dump, OAI-PMH and SPARQL. FlyTED is available at http://www.fly-ted.org/...
  7. ncbi Linked data and provenance in biological data webs
    Jun Zhao
    Image Bioinformatics Research Group, Department of Zoology, University of Oxford, The Tinbergen Building, South Parks Road, Oxford, OX1 3PS, UK
    Brief Bioinform 10:139-52. 2009
    ....