D Noble

Summary

Affiliation: University of Oxford
Country: UK

Publications

  1. ncbi Systems medicine and integrated care to combat chronic noncommunicable diseases
    Jean Bousquet
    Department of Respiratory Diseases, Arnaud de Villeneuve Hospital, CHU Montpellier, INSERM CESP U1018, Villejuif, France
    Genome Med 3:43. 2011
  2. ncbi The aims of systems biology: between molecules and organisms
    D Noble
    Department of Physiology, Anatomy and Genetics, Oxford, UK
    Pharmacopsychiatry 44:S9-S14. 2011
  3. ncbi Claude Bernard, the first systems biologist, and the future of physiology
    Denis Noble
    Department of Physiology, Anatomy and Genetics, Parks Road, Oxford OX1 3PT, UK
    Exp Physiol 93:16-26. 2008
  4. ncbi The Cardiac Physiome: perspectives for the future
    James Bassingthwaighte
    Department of Physiology, Anatomy and Genetics, Oxford, UK
    Exp Physiol 94:597-605. 2009
  5. ncbi Systems biology, the Physiome Project and oriental medicine
    Denis Noble
    Department of Physiology, Anatomy and Genetics, University of Oxford, Parks Road, Oxford, OX1 3PT, UK
    J Physiol Sci 59:249-51. 2009
  6. ncbi Could there be a Synthesis between Western and Oriental Medicine, and with Sasang Constitutional Medicine in Particular?
    Denis Noble
    CBE, FRS, Department of Physiology, Anatomy and Genetics Parks Road, Oxford OX1 3PT, UK
    Evid Based Complement Alternat Med 6:5-10. 2009
  7. ncbi Biophysics and systems biology
    Denis Noble
    Department of Physiology, Anatomy and Genetics, University of Oxford, Parks Road, Oxford OX1 3PT, UK
    Philos Transact A Math Phys Eng Sci 368:1125-39. 2010
  8. ncbi Competing oscillators in cardiac pacemaking: historical background
    Denis Noble
    Department of Physiology, Anatomy and Genetics, Oxford University, Parks Rd, Oxford OX1 3PT, United Kingdom
    Circ Res 106:1791-7. 2010
  9. ncbi Neo-Darwinism, the modern synthesis and selfish genes: are they of use in physiology?
    Denis Noble
    Department of Physiology, Anatomy and Genetics, Parks Road, Oxford OX1 3PT, UK
    J Physiol 589:1007-15. 2011
  10. ncbi Improved guinea-pig ventricular cell model incorporating a diadic space, IKr and IKs, and length- and tension-dependent processes
    D Noble
    University Laboratory of Physiology, University of Oxford, United Kingdom
    Can J Cardiol 14:123-34. 1998

Collaborators

Detail Information

Publications61

  1. ncbi Systems medicine and integrated care to combat chronic noncommunicable diseases
    Jean Bousquet
    Department of Respiratory Diseases, Arnaud de Villeneuve Hospital, CHU Montpellier, INSERM CESP U1018, Villejuif, France
    Genome Med 3:43. 2011
    ..This systems medicine strategy, which will take a holistic approach to disease, is designed to allow the results to be used globally, taking into account the needs and specificities of local economies and health systems...
  2. ncbi The aims of systems biology: between molecules and organisms
    D Noble
    Department of Physiology, Anatomy and Genetics, Oxford, UK
    Pharmacopsychiatry 44:S9-S14. 2011
    ..In neuroscience, the systems approach leads naturally to 2 important conclusions: first, that the idea of 'programs' in the brain is confusing, and second, that the self is better interpreted as a process than as an object...
  3. ncbi Claude Bernard, the first systems biologist, and the future of physiology
    Denis Noble
    Department of Physiology, Anatomy and Genetics, Parks Road, Oxford OX1 3PT, UK
    Exp Physiol 93:16-26. 2008
    ..The principles outlined are illustrated with examples from various aspects of physiology and biochemistry. Applying and developing these principles should form a major part of the future of physiology...
  4. ncbi The Cardiac Physiome: perspectives for the future
    James Bassingthwaighte
    Department of Physiology, Anatomy and Genetics, Oxford, UK
    Exp Physiol 94:597-605. 2009
    ..Despite the enormity of the challenge, which is certainly greater than that facing the pioneers of the human genome project 20 years ago, there is reason for optimism that real and accelerating progress is being made...
  5. ncbi Systems biology, the Physiome Project and oriental medicine
    Denis Noble
    Department of Physiology, Anatomy and Genetics, University of Oxford, Parks Road, Oxford, OX1 3PT, UK
    J Physiol Sci 59:249-51. 2009
    ..Second, there are major problems of translation and interpretation to be tackled. Exploring the full semantic frame of the oriental concepts will be necessary before mapping to concepts in western medicine can be useful...
  6. ncbi Could there be a Synthesis between Western and Oriental Medicine, and with Sasang Constitutional Medicine in Particular?
    Denis Noble
    CBE, FRS, Department of Physiology, Anatomy and Genetics Parks Road, Oxford OX1 3PT, UK
    Evid Based Complement Alternat Med 6:5-10. 2009
    ....
  7. ncbi Biophysics and systems biology
    Denis Noble
    Department of Physiology, Anatomy and Genetics, University of Oxford, Parks Road, Oxford OX1 3PT, UK
    Philos Transact A Math Phys Eng Sci 368:1125-39. 2010
    ..We will also require mathematical insight, perhaps of a nature we have not yet identified. This article is therefore also a challenge to mathematicians to develop such insights...
  8. ncbi Competing oscillators in cardiac pacemaking: historical background
    Denis Noble
    Department of Physiology, Anatomy and Genetics, Oxford University, Parks Rd, Oxford OX1 3PT, United Kingdom
    Circ Res 106:1791-7. 2010
    ..The reverse seems to be true only in pathological conditions. Studies from tissue-level work and on the development of the heart also provide valuable insights into the integrative action of the cardiac pacemaker...
  9. ncbi Neo-Darwinism, the modern synthesis and selfish genes: are they of use in physiology?
    Denis Noble
    Department of Physiology, Anatomy and Genetics, Parks Road, Oxford OX1 3PT, UK
    J Physiol 589:1007-15. 2011
    ..e. the 'success' in the gene pool that is supposed to be attributable to the 'selfish' property. It is not a physiologically testable hypothesis...
  10. ncbi Improved guinea-pig ventricular cell model incorporating a diadic space, IKr and IKs, and length- and tension-dependent processes
    D Noble
    University Laboratory of Physiology, University of Oxford, United Kingdom
    Can J Cardiol 14:123-34. 1998
    ..The new model has been tested against experimental data on action potential clamp, and on force-interval and duration-interval relations; it has been found to reliably reproduce experimental observations...
  11. ncbi Cellular mechanisms of cardiac mechano-electric feedback in a mathematical model
    P Kohl
    University Laboratory of Physiology, University of Oxford, United Kingdom
    Can J Cardiol 14:111-9. 1998
    ..While excitation-contraction coupling is rather well characterized, less is known about cellular mechanisms that promote mechanically induced changes in cardiac electrical activity--mechano-electric feedback...
  12. ncbi The systems biology approach to drug development: application to toxicity assessment of cardiac drugs
    B Rodriguez
    Oxford University Computing Laboratory, University of Oxford, Oxford, UK
    Clin Pharmacol Ther 88:130-4. 2010
    ..Because these can be fatal, potential electrophysiological cardiotoxicity is among the most stringent exclusion criteria in the licensing process...
  13. ncbi Systems biology: an approach
    P Kohl
    Department of Physiology, University of Oxford, Oxford, UK
    Clin Pharmacol Ther 88:25-33. 2010
    ..We discuss the role of models in Systems Biology and conclude with a consideration of their utility in biomedical research and development...
  14. ncbi Stretch-induced changes in heart rate and rhythm: clinical observations, experiments and mathematical models
    P Kohl
    University Laboratory of Physiology, Oxford, UK
    Prog Biophys Mol Biol 71:91-138. 1999
    ....
  15. ncbi Vagal control of heart rate is modulated by extracellular potassium
    C E Sears
    University Laboratory of Physiology, Oxford, UK
    J Auton Nerv Syst 77:164-71. 1999
    ..Modelling suggests this result may be explained by the effects of changes in [K+]0 on the current-voltage relationship for I(K,ACh)...
  16. ncbi The future: putting Humpty-Dumpty together again
    D Noble
    University Laboratory of Physiology, Parks Road, University of Oxford, Oxford OX1 3PT, UK
    Biochem Soc Trans 31:156-8. 2003
    ..Systems biology of the 21st century is set to become highly quantitative, and therefore one of the most computer-intensive disciplines...
  17. ncbi Systems biology and the heart
    Denis Noble
    University Laboratory of Physiology, Parks Road, Oxford OX1 3PT, UK
    Biosystems 83:75-80. 2006
    ..I use models of the heart to demonstrate that we can now go all the way from individual genetic information (on mutations, for example) to exploring the consequences at a whole organ level...
  18. ncbi From the Hodgkin-Huxley axon to the virtual heart
    Denis Noble
    Department of Physiology, Anatomy and Genetics, Parks Road, Oxford, OX1 3PT, UK
    J Physiol 580:15-22. 2007
    ..With over 40 years of interaction between simulation and experiment, the models are now sufficiently refined to begin to be of use in drug development...
  19. ncbi Modeling cardiac ischemia
    Blanca Rodriguez
    Oxford University Computing Laboratory, Wolfson Building, Parks Road, Oxford, UK
    Ann N Y Acad Sci 1080:395-414. 2006
    ..This article aims to review and summarize the results of these studies and to emphasize the role of computer simulations in improving the understanding of ischemia-related arrhythmias and how to efficiently terminate them...
  20. ncbi Modulatory effect of calmodulin-dependent kinase II (CaMKII) on sarcoplasmic reticulum Ca2+ handling and interval-force relations: a modelling study
    Gentaro Iribe
    Department of Physiology, Anatomy and Genetics, University of Oxford, Sherrington Building, Parks Road, Oxford OX1 3PT, UK
    Philos Transact A Math Phys Eng Sci 364:1107-33. 2006
    ....
  21. ncbi Resistance of cardiac cells to NCX knockout: a model study
    Denis Noble
    Department of Physiology, Anatomy and Genetics, University of Oxford, Parks Road, Oxford, OX1 3PT, UK
    Ann N Y Acad Sci 1099:306-9. 2007
    ..The effects can therefore be expected to be species-specific, and it is not possible to extrapolate the mouse results to those that may occur in the Guinea pig or human...
  22. ncbi The role of the Na+/Ca2+ exchangers in Ca2+ dynamics in ventricular myocytes
    Anna A Sher
    Computational Biology Group, Computing Laboratory, Department of Physiology, University of Oxford, UK
    Prog Biophys Mol Biol 96:377-98. 2008
    ..Our modelling results support the claim that NCX regulates the local control of Ca2+ and provide a powerful tool for future investigations of the control of sarcoplasmic reticulum (SR) Ca2+ release under pathological conditions...
  23. ncbi Prologue: mind over molecule: activating biological demons
    Denis Noble
    Department of Physiology, Anatomy and Genetics, Oxford University, Parks Road, Oxford OX1 3PT UK
    Ann N Y Acad Sci 1123:xi-xix. 2008
    ..The principles outlined are illustrated with examples from cardiac and other aspects of physiology and biochemistry...
  24. ncbi Computational models of the heart and their use in assessing the actions of drugs
    Denis Noble
    Department of Physiology, Anatomy and Genetics, University of Oxford, Oxford, UK
    J Pharmacol Sci 107:107-17. 2008
    ..The models have also been incorporated into tissue and organ models that enable arrhythmia to be modelled also at these levels. Work at these levels can reproduce both re-entrant arrhythmia and fibrillation...
  25. ncbi A global sensitivity tool for cardiac cell modeling: Application to ionic current balance and hypertrophic signaling
    Anna A Sher
    Department of Physiology, Anatomy and Genetics, University of Oxford, UK
    Conf Proc IEEE Eng Med Biol Soc 2010:1498-502. 2010
    ..Such profiling suggests new avenues for development of methodologies to predict drug action effects in cardiac cells...
  26. ncbi Commentary: physiology is the logic of life
    Denis Noble
    University Laboratory of Physiology, Parks Road, Oxford OX1 3PT, UK
    Jpn J Physiol 54:509-10. 2004
  27. ncbi One-dimensional rabbit sinoatrial node models: benefits and limitations
    Alan Garny
    Department of Physiology, University of Oxford, Oxford, United Kingdom
    J Cardiovasc Electrophysiol 14:S121-32. 2003
    ..Cardiac multicellular modeling has traditionally focused on ventricular electromechanics. More recently, models of the atria have started to emerge, and there is much interest in addressing sinoatrial node structure and function...
  28. ncbi Influence of Na/Ca exchange stoichiometry on model cardiac action potentials
    Denis Noble
    University Laboratory of Physiology, Parks Road, Oxford OX1 3PT, UK
    Ann N Y Acad Sci 976:133-6. 2002
    ..The K(d) required for such regulation is consistent with current experimental estimates of this parameter...
  29. ncbi The rise of computational biology
    Denis Noble
    Department of Physiology, University of Oxford, Parks Road, Oxford OX1 3PT, UK
    Nat Rev Mol Cell Biol 3:459-63. 2002
    ..So, why has all this happened so suddenly?..
  30. ncbi Modeling the heart
    Denis Noble
    University Laboratory of Physiology Oxford OX1 3PT, UK
    Physiology (Bethesda) 19:191-7. 2004
    ..The first models of calcium balance were made in the 1980s and have now reached a high degree of physiological detail. During the 1990s, these cell models were incorporated into anatomically detailed tissue and organ models...
  31. ncbi Unraveling the genetics and mechanisms of cardiac arrhythmia
    Denis Noble
    University Laboratory of Physiology, Parks Road, Oxford OX1 3PT, United Kingdom
    Proc Natl Acad Sci U S A 99:5755-6. 2002
  32. ncbi Genes and causation
    Denis Noble
    Department of Physiology, Anatomy and Genetics, University of Oxford, Parks Road, Oxford OX1 3PT, UK
    Philos Transact A Math Phys Eng Sci 366:3001-15. 2008
    ..Because it can solve the 'genetic differential effect problem', modelling of biological function has an essential role to play in unravelling genetic causation...
  33. ncbi Simulation of Na/Ca exchange activity during ischemia
    Denis Noble
    University Laboratory of Physiology, Oxford University, Oxford OX1 3PT, UK
    Ann N Y Acad Sci 976:431-7. 2002
    ..If such oscillations play a role in acute ischemic arrhythmias, then block of Na/Ca exchange may not be therapeutic...
  34. ncbi Dimensionality in cardiac modelling
    Alan Garny
    Department of Physiology, University of Oxford, Parks Road, Oxford OX1 3PT, UK
    Prog Biophys Mol Biol 87:47-66. 2005
    ..The ideal model will be as simple as possible and as complex as necessary for the particular question raised...
  35. ncbi The heart cell in silico: successes, failures and prospects
    Denis Noble
    University Laboratory of Physiology, Parks Road, Oxford OX1 3PT, UK
    Novartis Found Symp 247:182-94; discussion 194-7, 198-206, 244-52. 2002
    ..The insights gained are evident in the most recent developments in this field, both experimental and theoretical. The prospects for the future are discussed...
  36. ncbi Modeling the heart--from genes to cells to the whole organ
    Denis Noble
    University Laboratory of Physiology, Parks Road, Oxford OX1 3PT, UK
    Science 295:1678-82. 2002
    ..This review illustrates this development in the case of the heart. Systems physiology of the 21st century is set to become highly quantitative and, therefore, one of the most computer-intensive disciplines...
  37. ncbi Will genomics revolutionise pharmaceutical R&D?
    Denis Noble
    University Laboratory of Physiology, Parks Road, Oxford OX1 3PT, UK
    Trends Biotechnol 21:333-7. 2003
    ..The major obstacle to achieving this will be obtaining the relevant experimental data at levels higher than genomics and proteomics...
  38. ncbi Requirement of neuronal- and cardiac-type sodium channels for murine sinoatrial node pacemaking
    Ming Lei
    University Laboratory of Physiology, University of Oxford, OX1 3PT, UK
    J Physiol 559:835-48. 2004
    ..1) and cardiac Nav1.5 isoforms are involved in pacemaking, although the cardiac Nav1.5 isoform alone is involved in the propagation of the action potential from the SA node to the surrounding atrial muscle...
  39. ncbi A meta-analysis of cardiac electrophysiology computational models
    S A Niederer
    University Computing Laboratory, University of Oxford, Oxford, UK
    Exp Physiol 94:486-95. 2009
    ..These results indicate that even though the models aim to represent the same physiological system, both the sources of parameter values and the function of equivalent components are significantly different...
  40. ncbi Modelling of sodium-overload arrhythmias and their suppression
    D Noble
    University Laboratory of Physiology, University of Oxford, United Kingdom
    Can J Cardiol 14:97-100. 1998
    ..The results account for the large difference between therapeutic levels (approximately 30 microM) in whole tissue and the concentration (approximately 500 microM) required to suppress excitation in isolated cells...
  41. ncbi From genes to whole organs: connecting biochemistry to physiology
    D Noble
    University Laboratory of Physiology, University of Oxford, UK
    Novartis Found Symp 239:111-23; discussion 123-8, 150-9. 2001
    ..Complexity in biological systems also arises from tissue and organ geometry. This is illustrated using modelling of the whole heart...
  42. ncbi Comparison of step and ramp voltage clamp on background currents in guinea-pig ventricular cells
    A J Spindler
    University Laboratory of Physiology, Parks Road, Oxford OX1 3PT, UK
    Exp Physiol 84:865-79. 1999
    ..Small differences occurred in the ramps, but even at fast ramp speeds the effects are very much smaller than in Purkinje tissue. Only part of ib,Na is TTX sensitive and the effect does not occur in all cells...
  43. ncbi The heart is already working
    D Noble
    University Laboratory of Physiology, Parks Road, Oxford OX1 3PT, UK
    Biochem Soc Trans 33:539-42. 2005
    ..I use models of the heart to demonstrate that we can now go all the way from individual genetic information (on mutations, for example) to exploring the consequences at a whole-organ level...
  44. ncbi Modelling the heart: insights, failures and progress
    Denis Noble
    University Laboratory of Physiology, Parks Road, Oxford OX1 3PT, UK
    Bioessays 24:1155-63. 2002
    ..It is the iterative interaction between experiment and simulation that is important. Examples are given where this process has been instrumental in some of the major advances in the field...
  45. ncbi Pharmacodynamic effects in the cardiovascular system: the modeller's view
    Martin Fink
    Department of Physiology, Anatomy and Genetics, University of Oxford, Oxford, UK
    Basic Clin Pharmacol Toxicol 106:243-9. 2010
    ....
  46. ncbi Computational physiology and the Physiome Project
    Edmund J Crampin
    Centre for Mathematical Biology, Mathematical Institute, University of Oxford, 24-29 St Giles, Oxford, OX1 3LB, UK
    Exp Physiol 89:1-26. 2004
    ..Integrative physiology is central to the interpretation of genomic and proteomic data, and is becoming a highly quantitative, computer-intensive discipline...
  47. ncbi Role of pacemaking current in cardiac nodes: insights from a comparative study of sinoatrial node and atrioventricular node
    Jie Liu
    Department of Physiology, University Laboratory of Physiology, University of Oxford, Oxford OX1 3PT, UK
    Prog Biophys Mol Biol 96:294-304. 2008
    ..The computer simulation shows that the difference in the intrinsic CL could explain the difference in response to If blocking in these two cardiac nodes...
  48. ncbi Late sodium current in the pathophysiology of cardiovascular disease: consequences of sodium-calcium overload
    D Noble
    University Laboratory of Physiology, Parks Road, Oxford OX1 3PT, UK
    Heart 92:iv1-iv5. 2006
    ..Reduction of late sodium current would therefore be expected to have therapeutic benefits, particularly in disease states such as ischaemia in which sodium-calcium overload is a major feature...
  49. ncbi Directionality in drug action on sodium-calcium exchange
    D Noble
    Department of Physiology, University of Oxford, Parks Road, Oxford, OX1 3PT, UK
    Ann N Y Acad Sci 1099:540-3. 2007
    ..When the exchanger is operating near equilibrium, drug action is found to be equally effective in both directions...
  50. ncbi Role of Na/Ca exchange and the plasma membrane Ca2+-ATPase in cell function. Conference on Na/Ca exchange
    Denis Noble
    Department of Physiology, Oxford University, Parks Road, Oxford OX1 3PT, UK
    EMBO Rep 8:228-32. 2007
  51. ncbi The effects of static magnetic field on action potential propagation and excitation recovery in nerve
    R Hinch
    Mathematical Institute, 24-29 St. Giles, Oxford, OX1 3LB, UK
    Prog Biophys Mol Biol 87:321-8. 2005
    ..The predicted changes in speed of conduction and refractory period are very small...
  52. ncbi 'In silico' simulation of biological processes. Chair's introduction
    Denis Noble
    University Laboratory of Physiology, Parks Road, Oxford OX1 3PT, UK
    Novartis Found Symp 247:1-3. 2002
  53. ncbi Functional significance of Na+/Ca2+ exchangers co-localization with ryanodine receptors
    Anna A Sher
    Computational Biology Group, University of Oxford Computing Laboratory, Wolfson Building, Parks Road, Oxford OX1 3QD, Oxford, UK
    Ann N Y Acad Sci 1099:215-20. 2007
    ..g., impaired LCCs, local NCXs become an enhancer of sarcoplasmic reticulum release. Under such conditions incorporation of local NCXs is critical to accurately capture mechanisms of excitation-contraction coupling...
  54. ncbi Modelling of calcium handling in airway myocytes
    Etienne Roux
    Laboratoire de Physiologie Cellulaire Respiratoire, INSERM E 356, Universite Victor Segalen Bordeaux 2, 146 rue Leo Saignat, 33076 Bordeaux Cedex, France
    Prog Biophys Mol Biol 90:64-87. 2006
    ..The development of such models of airway myocytes is important for the understanding of the cellular mechanisms of airway reactivity and their possible modulation by pharmacological agents...
  55. ncbi Contributions of inwardly rectifying K+ currents to repolarization assessed using mathematical models of human ventricular myocytes
    Martin Fink
    Department of Bioengineering, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA 92093-0412, USA
    Philos Transact A Math Phys Eng Sci 364:1207-22. 2006
    ....
  56. ncbi Analysis of the chronotropic effect of acetylcholine on sinoatrial node cells
    Henggui Zhang
    School of Biomedical Sciences, University of Leeds, United Kingdom
    J Cardiovasc Electrophysiol 13:465-74. 2002
    ..The ionic basis underlying the negative chronotropic effect of acetylcholine (ACh) on sinoatrial (SA) node cells is unresolved and controversial. In the present study, mathematical modeling was used to address this issue...
  57. ncbi Ascending aortic stenosis selectively increases action potential-induced Ca2+ influx in epicardial myocytes of the rat left ventricle
    Tilmann Volk
    Institut fur Zellulare und Molekulare Physiologie, Friedrich Alexander Universitat Erlangen Nurnberg, Waldstrasse 6, 91054 Erlangen, Germany
    Exp Physiol 90:111-21. 2005
    ..In conclusion, AS significantly increased AP-induced Ca2+ influx in epicardial but not in endocardial myocytes of the rat left ventricle...
  58. ncbi Modeling of molecular and cellular mechanisms involved in Ca2+ signal encoding in airway myocytes
    Marko Marhl
    University of Maribor, Department of Physics, Koroska cesta 160, SI-2000 Maribor, Slovenia
    Cell Biochem Biophys 46:285-302. 2006
    ..Modeling the mechanisms responsible for the decoding of calcium signals is developed in a lesser extent; however, the most recent theoretical studies are briefly presented in relation with the known experimental results...
  59. ncbi Knowledge capture and the responsibility: past and present
    Nic Smith
    Prog Biophys Mol Biol 96:1-2. 2008
  60. ncbi Contributions of HERG K+ current to repolarization of the human ventricular action potential
    Martin Fink
    Department of Medicine, University of California San Diego, San Diego, CA, USA
    Prog Biophys Mol Biol 96:357-76. 2008
    ..Our overall goal is to understand the genesis of the T-wave of the human electrocardiogram...
  61. ncbi Editorial: computational modelling of cell & tissue processes & function
    Michael N Moore
    J Mol Histol 35:655-8. 2004
    ....