Research Topics
| D NobleSummaryAffiliation: University of Oxford Country: UK Publications
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Detail Information
Publications
Systems medicine and integrated care to combat chronic noncommunicable diseasesJean Bousquet
Department of Respiratory Diseases, Arnaud de Villeneuve Hospital, CHU Montpellier, INSERM CESP U1018, Villejuif, France
Genome Med 3:43. 2011..This systems medicine strategy, which will take a holistic approach to disease, is designed to allow the results to be used globally, taking into account the needs and specificities of local economies and health systems...
The aims of systems biology: between molecules and organismsD Noble
Department of Physiology, Anatomy and Genetics, Oxford, UK
Pharmacopsychiatry 44:S9-S14. 2011..In neuroscience, the systems approach leads naturally to 2 important conclusions: first, that the idea of 'programs' in the brain is confusing, and second, that the self is better interpreted as a process than as an object...
Claude Bernard, the first systems biologist, and the future of physiologyDenis Noble
Department of Physiology, Anatomy and Genetics, Parks Road, Oxford OX1 3PT, UK
Exp Physiol 93:16-26. 2008..The principles outlined are illustrated with examples from various aspects of physiology and biochemistry. Applying and developing these principles should form a major part of the future of physiology...
The Cardiac Physiome: perspectives for the futureJames Bassingthwaighte
Department of Physiology, Anatomy and Genetics, Oxford, UK
Exp Physiol 94:597-605. 2009..Despite the enormity of the challenge, which is certainly greater than that facing the pioneers of the human genome project 20 years ago, there is reason for optimism that real and accelerating progress is being made...
Systems biology, the Physiome Project and oriental medicineDenis Noble
Department of Physiology, Anatomy and Genetics, University of Oxford, Parks Road, Oxford, OX1 3PT, UK
J Physiol Sci 59:249-51. 2009..Second, there are major problems of translation and interpretation to be tackled. Exploring the full semantic frame of the oriental concepts will be necessary before mapping to concepts in western medicine can be useful...
Could there be a Synthesis between Western and Oriental Medicine, and with Sasang Constitutional Medicine in Particular?Denis Noble
CBE, FRS, Department of Physiology, Anatomy and Genetics Parks Road, Oxford OX1 3PT, UK
Evid Based Complement Alternat Med 6:5-10. 2009....
Biophysics and systems biologyDenis Noble
Department of Physiology, Anatomy and Genetics, University of Oxford, Parks Road, Oxford OX1 3PT, UK
Philos Transact A Math Phys Eng Sci 368:1125-39. 2010..We will also require mathematical insight, perhaps of a nature we have not yet identified. This article is therefore also a challenge to mathematicians to develop such insights...
Competing oscillators in cardiac pacemaking: historical backgroundDenis Noble
Department of Physiology, Anatomy and Genetics, Oxford University, Parks Rd, Oxford OX1 3PT, United Kingdom
Circ Res 106:1791-7. 2010..The reverse seems to be true only in pathological conditions. Studies from tissue-level work and on the development of the heart also provide valuable insights into the integrative action of the cardiac pacemaker...
Neo-Darwinism, the modern synthesis and selfish genes: are they of use in physiology?Denis Noble
Department of Physiology, Anatomy and Genetics, Parks Road, Oxford OX1 3PT, UK
J Physiol 589:1007-15. 2011..e. the 'success' in the gene pool that is supposed to be attributable to the 'selfish' property. It is not a physiologically testable hypothesis...
Improved guinea-pig ventricular cell model incorporating a diadic space, IKr and IKs, and length- and tension-dependent processesD Noble
University Laboratory of Physiology, University of Oxford, United Kingdom
Can J Cardiol 14:123-34. 1998..The new model has been tested against experimental data on action potential clamp, and on force-interval and duration-interval relations; it has been found to reliably reproduce experimental observations...
Cellular mechanisms of cardiac mechano-electric feedback in a mathematical modelP Kohl
University Laboratory of Physiology, University of Oxford, United Kingdom
Can J Cardiol 14:111-9. 1998..While excitation-contraction coupling is rather well characterized, less is known about cellular mechanisms that promote mechanically induced changes in cardiac electrical activity--mechano-electric feedback...
The systems biology approach to drug development: application to toxicity assessment of cardiac drugsB Rodriguez
Oxford University Computing Laboratory, University of Oxford, Oxford, UK
Clin Pharmacol Ther 88:130-4. 2010..Because these can be fatal, potential electrophysiological cardiotoxicity is among the most stringent exclusion criteria in the licensing process...
Systems biology: an approachP Kohl
Department of Physiology, University of Oxford, Oxford, UK
Clin Pharmacol Ther 88:25-33. 2010..We discuss the role of models in Systems Biology and conclude with a consideration of their utility in biomedical research and development...
Stretch-induced changes in heart rate and rhythm: clinical observations, experiments and mathematical modelsP Kohl
University Laboratory of Physiology, Oxford, UK
Prog Biophys Mol Biol 71:91-138. 1999....
Vagal control of heart rate is modulated by extracellular potassiumC E Sears
University Laboratory of Physiology, Oxford, UK
J Auton Nerv Syst 77:164-71. 1999..Modelling suggests this result may be explained by the effects of changes in [K+]0 on the current-voltage relationship for I(K,ACh)...
The future: putting Humpty-Dumpty together againD Noble
University Laboratory of Physiology, Parks Road, University of Oxford, Oxford OX1 3PT, UK
Biochem Soc Trans 31:156-8. 2003..Systems biology of the 21st century is set to become highly quantitative, and therefore one of the most computer-intensive disciplines...
Systems biology and the heartDenis Noble
University Laboratory of Physiology, Parks Road, Oxford OX1 3PT, UK
Biosystems 83:75-80. 2006..I use models of the heart to demonstrate that we can now go all the way from individual genetic information (on mutations, for example) to exploring the consequences at a whole organ level...
From the Hodgkin-Huxley axon to the virtual heartDenis Noble
Department of Physiology, Anatomy and Genetics, Parks Road, Oxford, OX1 3PT, UK
J Physiol 580:15-22. 2007..With over 40 years of interaction between simulation and experiment, the models are now sufficiently refined to begin to be of use in drug development...
Modeling cardiac ischemiaBlanca Rodriguez
Oxford University Computing Laboratory, Wolfson Building, Parks Road, Oxford, UK
Ann N Y Acad Sci 1080:395-414. 2006..This article aims to review and summarize the results of these studies and to emphasize the role of computer simulations in improving the understanding of ischemia-related arrhythmias and how to efficiently terminate them...
Modulatory effect of calmodulin-dependent kinase II (CaMKII) on sarcoplasmic reticulum Ca2+ handling and interval-force relations: a modelling studyGentaro Iribe
Department of Physiology, Anatomy and Genetics, University of Oxford, Sherrington Building, Parks Road, Oxford OX1 3PT, UK
Philos Transact A Math Phys Eng Sci 364:1107-33. 2006....
Resistance of cardiac cells to NCX knockout: a model studyDenis Noble
Department of Physiology, Anatomy and Genetics, University of Oxford, Parks Road, Oxford, OX1 3PT, UK
Ann N Y Acad Sci 1099:306-9. 2007..The effects can therefore be expected to be species-specific, and it is not possible to extrapolate the mouse results to those that may occur in the Guinea pig or human...
The role of the Na+/Ca2+ exchangers in Ca2+ dynamics in ventricular myocytesAnna A Sher
Computational Biology Group, Computing Laboratory, Department of Physiology, University of Oxford, UK
Prog Biophys Mol Biol 96:377-98. 2008..Our modelling results support the claim that NCX regulates the local control of Ca2+ and provide a powerful tool for future investigations of the control of sarcoplasmic reticulum (SR) Ca2+ release under pathological conditions...
Prologue: mind over molecule: activating biological demonsDenis Noble
Department of Physiology, Anatomy and Genetics, Oxford University, Parks Road, Oxford OX1 3PT UK
Ann N Y Acad Sci 1123:xi-xix. 2008..The principles outlined are illustrated with examples from cardiac and other aspects of physiology and biochemistry...
Computational models of the heart and their use in assessing the actions of drugsDenis Noble
Department of Physiology, Anatomy and Genetics, University of Oxford, Oxford, UK
J Pharmacol Sci 107:107-17. 2008..The models have also been incorporated into tissue and organ models that enable arrhythmia to be modelled also at these levels. Work at these levels can reproduce both re-entrant arrhythmia and fibrillation...
A global sensitivity tool for cardiac cell modeling: Application to ionic current balance and hypertrophic signalingAnna A Sher
Department of Physiology, Anatomy and Genetics, University of Oxford, UK
Conf Proc IEEE Eng Med Biol Soc 2010:1498-502. 2010..Such profiling suggests new avenues for development of methodologies to predict drug action effects in cardiac cells...
Commentary: physiology is the logic of lifeDenis Noble
University Laboratory of Physiology, Parks Road, Oxford OX1 3PT, UK
Jpn J Physiol 54:509-10. 2004
One-dimensional rabbit sinoatrial node models: benefits and limitationsAlan Garny
Department of Physiology, University of Oxford, Oxford, United Kingdom
J Cardiovasc Electrophysiol 14:S121-32. 2003..Cardiac multicellular modeling has traditionally focused on ventricular electromechanics. More recently, models of the atria have started to emerge, and there is much interest in addressing sinoatrial node structure and function...
Influence of Na/Ca exchange stoichiometry on model cardiac action potentialsDenis Noble
University Laboratory of Physiology, Parks Road, Oxford OX1 3PT, UK
Ann N Y Acad Sci 976:133-6. 2002..The K(d) required for such regulation is consistent with current experimental estimates of this parameter...
The rise of computational biologyDenis Noble
Department of Physiology, University of Oxford, Parks Road, Oxford OX1 3PT, UK
Nat Rev Mol Cell Biol 3:459-63. 2002..So, why has all this happened so suddenly?..
Modeling the heartDenis Noble
University Laboratory of Physiology Oxford OX1 3PT, UK
Physiology (Bethesda) 19:191-7. 2004..The first models of calcium balance were made in the 1980s and have now reached a high degree of physiological detail. During the 1990s, these cell models were incorporated into anatomically detailed tissue and organ models...
Unraveling the genetics and mechanisms of cardiac arrhythmiaDenis Noble
University Laboratory of Physiology, Parks Road, Oxford OX1 3PT, United Kingdom
Proc Natl Acad Sci U S A 99:5755-6. 2002
Genes and causationDenis Noble
Department of Physiology, Anatomy and Genetics, University of Oxford, Parks Road, Oxford OX1 3PT, UK
Philos Transact A Math Phys Eng Sci 366:3001-15. 2008..Because it can solve the 'genetic differential effect problem', modelling of biological function has an essential role to play in unravelling genetic causation...
Simulation of Na/Ca exchange activity during ischemiaDenis Noble
University Laboratory of Physiology, Oxford University, Oxford OX1 3PT, UK
Ann N Y Acad Sci 976:431-7. 2002..If such oscillations play a role in acute ischemic arrhythmias, then block of Na/Ca exchange may not be therapeutic...
Dimensionality in cardiac modellingAlan Garny
Department of Physiology, University of Oxford, Parks Road, Oxford OX1 3PT, UK
Prog Biophys Mol Biol 87:47-66. 2005..The ideal model will be as simple as possible and as complex as necessary for the particular question raised...
The heart cell in silico: successes, failures and prospectsDenis Noble
University Laboratory of Physiology, Parks Road, Oxford OX1 3PT, UK
Novartis Found Symp 247:182-94; discussion 194-7, 198-206, 244-52. 2002..The insights gained are evident in the most recent developments in this field, both experimental and theoretical. The prospects for the future are discussed...
Modeling the heart--from genes to cells to the whole organDenis Noble
University Laboratory of Physiology, Parks Road, Oxford OX1 3PT, UK
Science 295:1678-82. 2002..This review illustrates this development in the case of the heart. Systems physiology of the 21st century is set to become highly quantitative and, therefore, one of the most computer-intensive disciplines...
Will genomics revolutionise pharmaceutical R&D?Denis Noble
University Laboratory of Physiology, Parks Road, Oxford OX1 3PT, UK
Trends Biotechnol 21:333-7. 2003..The major obstacle to achieving this will be obtaining the relevant experimental data at levels higher than genomics and proteomics...
Requirement of neuronal- and cardiac-type sodium channels for murine sinoatrial node pacemakingMing Lei
University Laboratory of Physiology, University of Oxford, OX1 3PT, UK
J Physiol 559:835-48. 2004..1) and cardiac Nav1.5 isoforms are involved in pacemaking, although the cardiac Nav1.5 isoform alone is involved in the propagation of the action potential from the SA node to the surrounding atrial muscle...
A meta-analysis of cardiac electrophysiology computational modelsS A Niederer
University Computing Laboratory, University of Oxford, Oxford, UK
Exp Physiol 94:486-95. 2009..These results indicate that even though the models aim to represent the same physiological system, both the sources of parameter values and the function of equivalent components are significantly different...
Modelling of sodium-overload arrhythmias and their suppressionD Noble
University Laboratory of Physiology, University of Oxford, United Kingdom
Can J Cardiol 14:97-100. 1998..The results account for the large difference between therapeutic levels (approximately 30 microM) in whole tissue and the concentration (approximately 500 microM) required to suppress excitation in isolated cells...
From genes to whole organs: connecting biochemistry to physiologyD Noble
University Laboratory of Physiology, University of Oxford, UK
Novartis Found Symp 239:111-23; discussion 123-8, 150-9. 2001..Complexity in biological systems also arises from tissue and organ geometry. This is illustrated using modelling of the whole heart...
Comparison of step and ramp voltage clamp on background currents in guinea-pig ventricular cellsA J Spindler
University Laboratory of Physiology, Parks Road, Oxford OX1 3PT, UK
Exp Physiol 84:865-79. 1999..Small differences occurred in the ramps, but even at fast ramp speeds the effects are very much smaller than in Purkinje tissue. Only part of ib,Na is TTX sensitive and the effect does not occur in all cells...
The heart is already workingD Noble
University Laboratory of Physiology, Parks Road, Oxford OX1 3PT, UK
Biochem Soc Trans 33:539-42. 2005..I use models of the heart to demonstrate that we can now go all the way from individual genetic information (on mutations, for example) to exploring the consequences at a whole-organ level...
Modelling the heart: insights, failures and progressDenis Noble
University Laboratory of Physiology, Parks Road, Oxford OX1 3PT, UK
Bioessays 24:1155-63. 2002..It is the iterative interaction between experiment and simulation that is important. Examples are given where this process has been instrumental in some of the major advances in the field...
Pharmacodynamic effects in the cardiovascular system: the modeller's viewMartin Fink
Department of Physiology, Anatomy and Genetics, University of Oxford, Oxford, UK
Basic Clin Pharmacol Toxicol 106:243-9. 2010....
Computational physiology and the Physiome ProjectEdmund J Crampin
Centre for Mathematical Biology, Mathematical Institute, University of Oxford, 24-29 St Giles, Oxford, OX1 3LB, UK
Exp Physiol 89:1-26. 2004..Integrative physiology is central to the interpretation of genomic and proteomic data, and is becoming a highly quantitative, computer-intensive discipline...
Role of pacemaking current in cardiac nodes: insights from a comparative study of sinoatrial node and atrioventricular nodeJie Liu
Department of Physiology, University Laboratory of Physiology, University of Oxford, Oxford OX1 3PT, UK
Prog Biophys Mol Biol 96:294-304. 2008..The computer simulation shows that the difference in the intrinsic CL could explain the difference in response to If blocking in these two cardiac nodes...
Late sodium current in the pathophysiology of cardiovascular disease: consequences of sodium-calcium overloadD Noble
University Laboratory of Physiology, Parks Road, Oxford OX1 3PT, UK
Heart 92:iv1-iv5. 2006..Reduction of late sodium current would therefore be expected to have therapeutic benefits, particularly in disease states such as ischaemia in which sodium-calcium overload is a major feature...
Directionality in drug action on sodium-calcium exchangeD Noble
Department of Physiology, University of Oxford, Parks Road, Oxford, OX1 3PT, UK
Ann N Y Acad Sci 1099:540-3. 2007..When the exchanger is operating near equilibrium, drug action is found to be equally effective in both directions...
Role of Na/Ca exchange and the plasma membrane Ca2+-ATPase in cell function. Conference on Na/Ca exchangeDenis Noble
Department of Physiology, Oxford University, Parks Road, Oxford OX1 3PT, UK
EMBO Rep 8:228-32. 2007
The effects of static magnetic field on action potential propagation and excitation recovery in nerveR Hinch
Mathematical Institute, 24-29 St. Giles, Oxford, OX1 3LB, UK
Prog Biophys Mol Biol 87:321-8. 2005..The predicted changes in speed of conduction and refractory period are very small...
'In silico' simulation of biological processes. Chair's introductionDenis Noble
University Laboratory of Physiology, Parks Road, Oxford OX1 3PT, UK
Novartis Found Symp 247:1-3. 2002
Functional significance of Na+/Ca2+ exchangers co-localization with ryanodine receptorsAnna A Sher
Computational Biology Group, University of Oxford Computing Laboratory, Wolfson Building, Parks Road, Oxford OX1 3QD, Oxford, UK
Ann N Y Acad Sci 1099:215-20. 2007..g., impaired LCCs, local NCXs become an enhancer of sarcoplasmic reticulum release. Under such conditions incorporation of local NCXs is critical to accurately capture mechanisms of excitation-contraction coupling...
Modelling of calcium handling in airway myocytesEtienne Roux
Laboratoire de Physiologie Cellulaire Respiratoire, INSERM E 356, Universite Victor Segalen Bordeaux 2, 146 rue Leo Saignat, 33076 Bordeaux Cedex, France
Prog Biophys Mol Biol 90:64-87. 2006..The development of such models of airway myocytes is important for the understanding of the cellular mechanisms of airway reactivity and their possible modulation by pharmacological agents...
Contributions of inwardly rectifying K+ currents to repolarization assessed using mathematical models of human ventricular myocytesMartin Fink
Department of Bioengineering, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA 92093-0412, USA
Philos Transact A Math Phys Eng Sci 364:1207-22. 2006....
Analysis of the chronotropic effect of acetylcholine on sinoatrial node cellsHenggui Zhang
School of Biomedical Sciences, University of Leeds, United Kingdom
J Cardiovasc Electrophysiol 13:465-74. 2002..The ionic basis underlying the negative chronotropic effect of acetylcholine (ACh) on sinoatrial (SA) node cells is unresolved and controversial. In the present study, mathematical modeling was used to address this issue...
Ascending aortic stenosis selectively increases action potential-induced Ca2+ influx in epicardial myocytes of the rat left ventricleTilmann Volk
Institut fur Zellulare und Molekulare Physiologie, Friedrich Alexander Universitat Erlangen Nurnberg, Waldstrasse 6, 91054 Erlangen, Germany
Exp Physiol 90:111-21. 2005..In conclusion, AS significantly increased AP-induced Ca2+ influx in epicardial but not in endocardial myocytes of the rat left ventricle...
Modeling of molecular and cellular mechanisms involved in Ca2+ signal encoding in airway myocytesMarko Marhl
University of Maribor, Department of Physics, Koroska cesta 160, SI-2000 Maribor, Slovenia
Cell Biochem Biophys 46:285-302. 2006..Modeling the mechanisms responsible for the decoding of calcium signals is developed in a lesser extent; however, the most recent theoretical studies are briefly presented in relation with the known experimental results...
Knowledge capture and the responsibility: past and presentNic Smith
Prog Biophys Mol Biol 96:1-2. 2008
Contributions of HERG K+ current to repolarization of the human ventricular action potentialMartin Fink
Department of Medicine, University of California San Diego, San Diego, CA, USA
Prog Biophys Mol Biol 96:357-76. 2008..Our overall goal is to understand the genesis of the T-wave of the human electrocardiogram...
Editorial: computational modelling of cell & tissue processes & functionMichael N Moore
J Mol Histol 35:655-8. 2004....
