David J Harvey

Summary

Affiliation: University of Oxford
Country: UK

Publications

  1. ncbi Analysis of carbohydrates and glycoconjugates by matrix-assisted laser desorption/ionization mass spectrometry: an update for 2007-2008
    David J Harvey
    Oxford Glycobiology Institute, Department of Biochemistry, University of Oxford, Oxford OX1 3QU, UK
    Mass Spectrom Rev 31:183-311. 2012
  2. ncbi Fragmentation of negative ions from N-linked carbohydrates, part 4. Fragmentation of complex glycans lacking substitution on the 6-antenna
    David J Harvey
    Glycobiology Institute, Department of Biochemistry, University of Oxford, South Parks Road, Oxford, OX1 3QU, UK
    J Mass Spectrom 45:528-35. 2010
  3. ncbi Identification of high-mannose and multiantennary complex-type N-linked glycans containing alpha-galactose epitopes from Nurse shark IgM heavy chain
    David J Harvey
    Oxford Glycobiology Institute, Department of Biochemistry, University of Oxford, South Parks Road, Oxford OX1 3QU, UK
    Glycoconj J 26:1055-64. 2009
  4. ncbi Analysis of carbohydrates and glycoconjugates by matrix-assisted laser desorption/ionization mass spectrometry: an update for the period 2005-2006
    David J Harvey
    Department of Biochemistry, Oxford Glycobiology Institute, University of Oxford, Oxford OX1 3QU, UK
    Mass Spectrom Rev 30:1-100. 2011
  5. ncbi Analysis of carbohydrates and glycoconjugates by matrix-assisted laser desorption/ionization mass spectrometry: An update for 2003-2004
    David J Harvey
    Department of Biochemistry, Oxford Glycobiology Institute, University of Oxford, Oxford OX1 3QU, UK
    Mass Spectrom Rev 28:273-361. 2009
  6. ncbi Application of negative ion MS/MS to the identification of N-glycans released from carcinoembryonic antigen cell adhesion molecule 1 (CEACAM1)
    David J Harvey
    Oxford Glycobiology Institute, Department of Biochemistry, University of Oxford, Oxford, UK
    J Mass Spectrom 44:50-60. 2009
  7. ncbi Proposal for a standard system for drawing structural diagrams of N- and O-linked carbohydrates and related compounds
    David J Harvey
    Oxford Glycobiology Institute, Department of Biochemistry, University of Oxford, UK
    Proteomics 9:3796-801. 2009
  8. ncbi Symbol nomenclature for representing glycan structures: Extension to cover different carbohydrate types
    David J Harvey
    Oxford Glycobiology Institute, Department of Biochemistry, University of Oxford, South Parks Road, Oxford, OX, UK
    Proteomics 11:4291-5. 2011
  9. ncbi Ion mobility mass spectrometry for extracting spectra of N-glycans directly from incubation mixtures following glycan release: application to glycans from engineered glycoforms of intact, folded HIV gp120
    David J Harvey
    Oxford Glycobiology Institute, Department of Biochemistry, University of Oxford, South Parks Road, Oxford, OX1 3QU, UK
    J Am Soc Mass Spectrom 22:568-81. 2011
  10. ncbi Differentiation between isomeric triantennary N-linked glycans by negative ion tandem mass spectrometry and confirmation of glycans containing galactose attached to the bisecting (beta1-4-GlcNAc) residue in N-glycans from IgG
    David J Harvey
    Oxford Glycobiology Institute, Department of Biochemistry, University of Oxford, Oxford OX1 3QU, UK
    Rapid Commun Mass Spectrom 22:1047-52. 2008

Collaborators

Detail Information

Publications77

  1. ncbi Analysis of carbohydrates and glycoconjugates by matrix-assisted laser desorption/ionization mass spectrometry: an update for 2007-2008
    David J Harvey
    Oxford Glycobiology Institute, Department of Biochemistry, University of Oxford, Oxford OX1 3QU, UK
    Mass Spectrom Rev 31:183-311. 2012
    ..However, most of the work relating to sample preparation and glycan synthesis is equally relevant to electrospray and, consequently, those proposing analyses by electrospray should also find material in this review of interest...
  2. ncbi Fragmentation of negative ions from N-linked carbohydrates, part 4. Fragmentation of complex glycans lacking substitution on the 6-antenna
    David J Harvey
    Glycobiology Institute, Department of Biochemistry, University of Oxford, South Parks Road, Oxford, OX1 3QU, UK
    J Mass Spectrom 45:528-35. 2010
    ..Glycans obtained from such enzyme-deficient patients can, thus, be a valuable way of obtaining spectra of specific isomers in a relatively pure state for interpretation of mass spectra...
  3. ncbi Identification of high-mannose and multiantennary complex-type N-linked glycans containing alpha-galactose epitopes from Nurse shark IgM heavy chain
    David J Harvey
    Oxford Glycobiology Institute, Department of Biochemistry, University of Oxford, South Parks Road, Oxford OX1 3QU, UK
    Glycoconj J 26:1055-64. 2009
    ..This appears to be the first comprehensive study of glycosylation in this species of animal. The glycosylation pattern has implications for the mechanism of activation of the complement system by nurse shark IgM...
  4. ncbi Analysis of carbohydrates and glycoconjugates by matrix-assisted laser desorption/ionization mass spectrometry: an update for the period 2005-2006
    David J Harvey
    Department of Biochemistry, Oxford Glycobiology Institute, University of Oxford, Oxford OX1 3QU, UK
    Mass Spectrom Rev 30:1-100. 2011
    ..Large carbohydrate-protein complexes and glycodendrimers are highlighted in this final section...
  5. ncbi Analysis of carbohydrates and glycoconjugates by matrix-assisted laser desorption/ionization mass spectrometry: An update for 2003-2004
    David J Harvey
    Department of Biochemistry, Oxford Glycobiology Institute, University of Oxford, Oxford OX1 3QU, UK
    Mass Spectrom Rev 28:273-361. 2009
    ....
  6. ncbi Application of negative ion MS/MS to the identification of N-glycans released from carcinoembryonic antigen cell adhesion molecule 1 (CEACAM1)
    David J Harvey
    Oxford Glycobiology Institute, Department of Biochemistry, University of Oxford, Oxford, UK
    J Mass Spectrom 44:50-60. 2009
    ..Sialic acids were in both alpha2-3 and alpha2-6 linkage as determined by MALDI-TOF MS following linkage-specific derivatization...
  7. ncbi Proposal for a standard system for drawing structural diagrams of N- and O-linked carbohydrates and related compounds
    David J Harvey
    Oxford Glycobiology Institute, Department of Biochemistry, University of Oxford, UK
    Proteomics 9:3796-801. 2009
    ..Constituent monosaccharides are depicted by shapes modified to show OAc, deoxy, etc. Linkage is indicated by the bond angle and anomericity by solid (beta) or dashed (alpha) lines...
  8. ncbi Symbol nomenclature for representing glycan structures: Extension to cover different carbohydrate types
    David J Harvey
    Oxford Glycobiology Institute, Department of Biochemistry, University of Oxford, South Parks Road, Oxford, OX, UK
    Proteomics 11:4291-5. 2011
    ..It is hoped that these proposals will stimulate discussion so that a consensus can be reached as to how the glycobiology community can best convey complex information in a simple manner...
  9. ncbi Ion mobility mass spectrometry for extracting spectra of N-glycans directly from incubation mixtures following glycan release: application to glycans from engineered glycoforms of intact, folded HIV gp120
    David J Harvey
    Oxford Glycobiology Institute, Department of Biochemistry, University of Oxford, South Parks Road, Oxford, OX1 3QU, UK
    J Am Soc Mass Spectrom 22:568-81. 2011
    ....
  10. ncbi Differentiation between isomeric triantennary N-linked glycans by negative ion tandem mass spectrometry and confirmation of glycans containing galactose attached to the bisecting (beta1-4-GlcNAc) residue in N-glycans from IgG
    David J Harvey
    Oxford Glycobiology Institute, Department of Biochemistry, University of Oxford, Oxford OX1 3QU, UK
    Rapid Commun Mass Spectrom 22:1047-52. 2008
    ..Negative ion MS/MS analysis of glycans is likely to prove an invaluable tool in the analysis and monitoring of therapeutic glycoproteins...
  11. ncbi Derivatization of carbohydrates for analysis by chromatography; electrophoresis and mass spectrometry
    David J Harvey
    Oxford Glycobiology Institute, Department of Biochemistry, South Parks Road, Oxford OX1 3QU, UK
    J Chromatogr B Analyt Technol Biomed Life Sci 879:1196-225. 2011
    ..All of these groups have been the targets of derivatization and this review attempts to summarise the main methods used for these various functional groups...
  12. ncbi Analysis of carbohydrates and glycoconjugates by matrix-assisted laser desorption/ionization mass spectrometry: an update covering the period 2001-2002
    David J Harvey
    Department of Biochemistry, Oxford Glycobiology Institute, South Parks Road, Oxford OX1 3QU, UK
    Mass Spectrom Rev 27:125-201. 2008
    ..There is an increasing emphasis on its use for examination of biological systems rather than on studies of fundamental aspects and method development and this is reflected by much of the work on applications appearing in tabular form...
  13. ncbi Interaction of mannan binding lectin with alpha2 macroglobulin via exposed oligomannose glycans: a conserved feature of the thiol ester protein family?
    James N Arnold
    Medical Research Council Immunochemistry Unit and Oxford Glycobiology Institute, Department of Biochemistry, University of Oxford, South Parks Road, Oxford OX1 3QU, England
    J Biol Chem 281:6955-63. 2006
    ..Binding would lead to opsonization or activation of enzyme systems such as complement...
  14. ncbi Human serum IgM glycosylation: identification of glycoforms that can bind to mannan-binding lectin
    James N Arnold
    Medical Research Council Immunochemistry Unit, University of Oxford, South Parks Road, Oxford OX1 3QU, United Kingdom
    J Biol Chem 280:29080-7. 2005
    ..Antigen-bound IgM pentamers therefore do not activate complement via the lectin pathway, but MBL might have a role in the clearance of aggregated IgM...
  15. ncbi Inhibition of hybrid- and complex-type glycosylation reveals the presence of the GlcNAc transferase I-independent fucosylation pathway
    Max Crispin
    Weatherall Institute of Molecular Medicine, University of Oxford, John Radcliffe Hospital, Headington, Oxford OX3 9DS, UK
    Glycobiology 16:748-56. 2006
    ..The presence of the GnT I-independent fucosylation pathway is an important consideration when engineering mammalian glycosylation...
  16. ncbi Identification of N-glycans from Ebola virus glycoproteins by matrix-assisted laser desorption/ionisation time-of-flight and negative ion electrospray tandem mass spectrometry
    Gayle Ritchie
    Oxford Glycobiology Institute, Department of Biochemistry, University of Oxford, Oxford, UK
    Rapid Commun Mass Spectrom 24:571-85. 2010
    ..These results confirm and expand previous findings on partial characterisation of the Ebola virus transmembrane glycoprotein. They represent the first detailed data on carbohydrate structures of the Ebola virus sGP...
  17. ncbi O-glycan sialylation and the structure of the stalk-like region of the T cell co-receptor CD8
    Anthony H Merry
    Oxford Glycobiology Institute, Department of Biochemistry, The University of Oxford, South Parks Road, Oxford OX1 3QU, United Kingdom
    J Biol Chem 278:27119-28. 2003
    ....
  18. ncbi Cellular effects of deoxynojirimycin analogues: inhibition of N-linked oligosaccharide processing and generation of free glucosylated oligosaccharides
    Howard R Mellor
    Glycobiology Institute, Department of Biochemistry, University of Oxford, South Parks Road, Oxford OX1 3QU, UK
    Biochem J 381:867-75. 2004
    ..This represents the most detailed characterization of the FOS structures arising from ER a-glucosidase inhibition to date...
  19. ncbi Disruption of alpha-mannosidase processing induces non-canonical hybrid-type glycosylation
    Max Crispin
    Division of Structural Biology, Wellcome Trust Centre for Human Genetics, University of Oxford, Roosevelt Drive, Headington, Oxford OX3 7BN, UK
    FEBS Lett 581:1963-8. 2007
    ....
  20. ncbi Recovery of intact 2-aminobenzamide-labeled O-glycans released from glycoproteins by hydrazinolysis
    Anthony H Merry
    Oxford Glycobiology Institute, Department of Biochemistry, University of Oxford, South Parks Road, Oxford, OX1 3QU, United Kingdom
    Anal Biochem 304:91-9. 2002
    ....
  21. ncbi Human follicular lymphoma cells contain oligomannose glycans in the antigen-binding site of the B-cell receptor
    Catherine M Radcliffe
    Glycobiology Institute, Medical Research Council Immunochemistry Unit, Department of Biochemistry, University of Oxford, South Parks Road, Oxford OX1 3QU, United Kingdom
    J Biol Chem 282:7405-15. 2007
    ..These findings suggest a potential contribution to lymphoma pathogenesis involving antigen-independent interaction of surface immunoglobulin of the B-cell receptor with mannose-binding molecules of innate immunity in the germinal center...
  22. ncbi Detailed glycan analysis of serum glycoproteins of patients with congenital disorders of glycosylation indicates the specific defective glycan processing step and provides an insight into pathogenesis
    Michael Butler
    The Glycobiology Institute, Department of Biochemistry, Oxford University, South Parks Road, Oxford, OX1 3QU, UK
    Glycobiology 13:601-22. 2003
    ....
  23. ncbi Detailed N-glycan analysis of mannose receptor purified from murine spleen indicates tissue specific sialylation
    Yunpeng Su
    Glycobiology Institute, Biochemistry Department, University of Oxford, South Parks Road, OX1, 3QU, United Kingdom
    Biochem Biophys Res Commun 384:436-43. 2009
    ..Our study provides a profile of MR N-linked glycosylation that will facilitate our understanding of their physiological role on MR biology in vivo...
  24. ncbi Inhibition of mammalian glycan biosynthesis produces non-self antigens for a broadly neutralising, HIV-1 specific antibody
    Christopher N Scanlan
    Glycobiology Institute, Department of Biochemistry, University of Oxford, Oxford
    J Mol Biol 372:16-22. 2007
    ..Moreover, this study provides an alternative protein engineering approach to the design of a carbohydrate vaccine for HIV-1 by chemical synthesis...
  25. ncbi A strategy to reveal potential glycan markers from serum glycoproteins associated with breast cancer progression
    Umi M Abd Hamid
    Oxford Glycobiology Institute, Department of Biochemistry, University of Oxford, South Parks Road, Oxford OX13QU, UK
    Glycobiology 18:1105-18. 2008
    ..These preliminary findings suggest that specific glycans and glycoforms of proteins may be candidates for improved markers in the monitoring of breast cancer progression...
  26. ncbi Controlled glycosylation of therapeutic antibodies in plants
    Yoram Tekoah
    Department of Biochemistry, Glycobiology Institute, University of Oxford, South Parks Road, Oxford OX1 3QU, UK
    Arch Biochem Biophys 426:266-78. 2004
    ..These results indicate that plant genetic engineering could provide an effective and inexpensive means to control the glycosylation of therapeutic proteins such as mAbs, by the addition of a KDEL signal as a regulatory element...
  27. ncbi An analytical and structural database provides a strategy for sequencing O-glycans from microgram quantities of glycoproteins
    Louise Royle
    Glycobiology Institute, Department of Biochemistry, University of Oxford, South Parks Road, Oxford, OX1 3QU, United Kingdom
    Anal Biochem 304:70-90. 2002
    ..This approach provides a basis for the analysis of subpicomole quantities of O-glycans from normal levels of natural glycoproteins...
  28. ncbi Secretory IgA N- and O-glycans provide a link between the innate and adaptive immune systems
    Louise Royle
    Glycobiology Institute, Department of Biochemistry, Oxford University, United Kingdom
    J Biol Chem 278:20140-53. 2003
    ....
  29. ncbi Polysaccharide mimicry of the epitope of the broadly neutralizing anti-HIV antibody, 2G12, induces enhanced antibody responses to self oligomannose glycans
    D Cameron Dunlop
    Oxford Glycobiology Institute, Department of Biochemistry, University of Oxford, South Parks Road, Oxford OX1 3QU, UK
    Glycobiology 20:812-23. 2010
    ....
  30. ncbi Identification of N-linked carbohydrates from severe acute respiratory syndrome (SARS) spike glycoprotein
    Gayle Ritchie
    Oxford Glycobiology Institute, Department of Biochemistry, South Parks Road, Oxford OX1 3QU, UK
    Virology 399:257-69. 2010
    ..Our data in tissue culture indicate that inhibition of N-glycan processing may be considered as a therapeutic strategy against SARS CoV infections...
  31. ncbi Ovarian cancer is associated with changes in glycosylation in both acute-phase proteins and IgG
    Radka Saldova
    Department of Biochemistry, Oxford Glycobiology Institute, University of Oxford, Oxford, UK
    Glycobiology 17:1344-56. 2007
    ....
  32. ncbi HPLC-based analysis of serum N-glycans on a 96-well plate platform with dedicated database software
    Louise Royle
    Department of Biochemistry, Glycobiology Institute, University of Oxford, Oxford OX1 3QU, UK
    Anal Biochem 376:1-12. 2008
    ..This technology is also suitable for preparing released glycans for other analytical techniques. Here we demonstrate its application to rheumatoid arthritis using 5 microl of patient serum...
  33. ncbi Structural and quantitative analysis of N-linked glycans by matrix-assisted laser desorption ionization and negative ion nanospray mass spectrometry
    David J Harvey
    Oxford Glycobiology Institute, Department of Biochemistry, South Parks Road, Oxford OX1 3QU, UK
    Anal Biochem 376:44-60. 2008
    ..Quantities of glycans were measured by ESI and by matrix-assisted laser desorption ionization mass spectrometry; each technique produced virtually identical results for the neutral desialylated glycans...
  34. ncbi Proteomic analysis of glycosylation: structural determination of N- and O-linked glycans by mass spectrometry
    David J Harvey
    Department of Biochemistry, Glycobiology Institute, University of Oxford, South Parks Road, Oxford, OX1 3QU, UK
    Expert Rev Proteomics 2:87-101. 2005
    ..This technique combines high throughput with ease of structural interpretation and provides structural details that are difficult to obtain by classical methods...
  35. ncbi Fragmentation of negative ions from carbohydrates: part 2. Fragmentation of high-mannose N-linked glycans
    David J Harvey
    Department of Biochemistry, Glycobiology Institute, University of Oxford, Oxford, United Kingdom
    J Am Soc Mass Spectrom 16:631-46. 2005
    ..C-ions defined the sequence of the constituent monosaccharide residues. Detailed fragmentation mechanisms are proposed to account for many of the diagnostic ions...
  36. ncbi Determining the structure of glycan moieties by mass spectrometry
    David J Harvey
    University of Oxford, Oxford, United Kingdom
    Curr Protoc Protein Sci . 2006
    ..Practical details are given for the purification of samples prior to mass spectrometric analysis and for recording FAB, MALDI, and ESI spectra...
  37. ncbi Comparison of the N-linked glycans from soluble and GPI-anchored CD59 expressed in CHO cells
    Susan F Wheeler
    Oxford Glycobiology Institute, Department of Biochemistry, South Parks Road, Oxford, OX1 3QU, United Kingdom
    Glycobiology 12:261-71. 2002
    ..The results show that the presence of the anchor increases the extent of glycan processing, possibly as the result of longer exposure to the glycosyltransferases or to a closer proximity of the protein to these enzymes...
  38. ncbi Ionization and fragmentation of N-linked glycans as silver adducts by electrospray mass spectrometry
    David J Harvey
    Glycobiology Institute, Department of Biochemistry, University of Oxford, South Parks Road, Oxford OX1 3QU, UK
    Rapid Commun Mass Spectrom 19:484-92. 2005
    ..Silver was very efficient at cleaving the glycosidic bonds, so much so that spectra tended to contain glycosidic ions at most possible combinations of the constituent monosaccharides...
  39. ncbi "Internal residue loss": rearrangements occurring during the fragmentation of carbohydrates derivatized at the reducing terminus
    David J Harvey
    Oxford Glycobiology Institute, Department of Biochemistry, UK
    Anal Chem 74:734-40. 2002
    ..A mechanism, involving initial protonation of the amine nitrogen atom of the derivative, is proposed to account for the formation of the observed ions...
  40. ncbi Fragmentation of negative ions from carbohydrates: part 3. Fragmentation of hybrid and complex N-linked glycans
    David J Harvey
    Department of Biochemistry, Glycobiology Institute, University of Oxford, Oxford, United Kingdom
    J Am Soc Mass Spectrom 16:647-59. 2005
    ..C-ions defined the sequence of the constituent monosaccharide residues. Detailed fragmentation mechanisms are proposed to account for several of the diagnostic ions...
  41. ncbi Collision-induced fragmentation of negative ions from N-linked glycans derivatized with 2-aminobenzoic acid
    David J Harvey
    Glycobiology Institute, Department of Biochemistry, University of Oxford, UK
    J Mass Spectrom 40:642-53. 2005
    ..Detection limits were around 200 fmol (3 : 1 signal-to-noise ratio)...
  42. ncbi Identification of specific glycoforms of major histocompatibility complex class I heavy chains suggests that class I peptide loading is an adaptation of the quality control pathway involving calreticulin and ERp57
    Catherine M Radcliffe
    Glycobiology Institute, Department of Biochemistry, University of Oxford, South Parks Road, Oxford OX1 3QU, United Kingdom
    J Biol Chem 277:46415-23. 2002
    ..This is consistent with the hypothesis that the class I loading process is an adaptation of the quality control mechanism involving calreticulin and ERp57...
  43. ncbi The glycosylation of human serum IgD and IgE and the accessibility of identified oligomannose structures for interaction with mannan-binding lectin
    James N Arnold
    Medical Research Council MRC Immunochemistry Unit and Oxford Glycobiology Institute, University of Oxford, United Kingdom
    J Immunol 173:6831-40. 2004
    ..This is the first study of the glycosylation of human serum IgD and IgE from nonmyeloma proteins...
  44. ncbi Fragmentation of N-linked glycans with a matrix-assisted laser desorption/ionization ion trap time-of-flight mass spectrometer
    David J Harvey
    Oxford Glycobiology Institute, Department of Biochemistry, South Parks Road, Oxford OX1 3QU, UK
    Rapid Commun Mass Spectrom 18:2997-3007. 2004
    ..The proposed structures of several cross-ring cleavage ions were confirmed and it was shown that MS3 spectra could be obtained from as little as 10 fmol of glycan...
  45. ncbi Fragmentation of negative ions from carbohydrates: part 1. Use of nitrate and other anionic adducts for the production of negative ion electrospray spectra from N-linked carbohydrates
    David J Harvey
    Department of Biochemistry, Glycobiology Institute, University of Oxford, Oxford, United Kingdom
    J Am Soc Mass Spectrom 16:622-30. 2005
    ..Acidic glycans fragmented differently on account of charge localization on the acid functions rather than the hydroxy groups...
  46. ncbi Derivatization of sialic acids for stabilization in matrix-assisted laser desorption/ionization mass spectrometry and concomitant differentiation of alpha(2 --> 3)- and alpha(2 --> 6)-isomers
    Susan F Wheeler
    Oxford Glycobiology Institute, Department of Biochemistry, South Parks Road, Oxford OX1 3QU, UK
    Rapid Commun Mass Spectrom 23:303-12. 2009
    ..The method was applied to N-linked glycans released from bovine fetuin and porcine thyroglobulin...
  47. ncbi Halogeno-substituted 2-aminobenzoic acid derivatives for negative ion fragmentation studies of N-linked carbohydrates
    David J Harvey
    Glycobiology Institute, Department of Biochemistry, University of Oxford, South Parks Road, Oxford OX1 3QU, UK
    Rapid Commun Mass Spectrom 19:397-400. 2005
    ....
  48. ncbi Cellular effects of deoxynojirimycin analogues: uptake, retention and inhibition of glycosphingolipid biosynthesis
    Howard R Mellor
    Glycobiology Institute, Department of Biochemistry, University of Oxford, South Parks Road, Oxford OX1 3QU, UK
    Biochem J 381:861-6. 2004
    ....
  49. ncbi Enzymatic preparation and isolation of glycopeptides
    David J Harvey
    Oxford Glycobiology Institute, Oxford University, UK
    Methods Mol Biol 211:83-9. 2003
  50. ncbi Identification of sites of glycosylation
    David J Harvey
    Oxford Glycobiology Institute, Oxford University, UK
    Methods Mol Biol 211:371-83. 2003
  51. ncbi Structural determination of N-linked glycans by matrix-assisted laser desorption/ionization and electrospray ionization mass spectrometry
    David J Harvey
    Glycobiology Institute, Department of Biochemistry, University of Oxford, UK
    Proteomics 5:1774-86. 2005
    ..Fragmentation of negative ions followed specific pathways that defined structural details of the glycans that were difficult to obtain by classical methods such as exoglycosidase digestion...
  52. ncbi Analysis of carbohydrates and glycoconjugates by matrix-assisted laser desorption/ionization mass spectrometry: An update covering the period 1999-2000
    David J Harvey
    Department of Biochemistry, Oxford Glycobiology Institute, University of Oxford, Oxford OX1 3QU, United Kingdom
    Mass Spectrom Rev 25:595-662. 2006
    ..Applications of MALDI mass spectrometry to the study of enzymes acting on carbohydrates (glycosyltransferases and glycosidases) and to the synthesis of carbohydrates, are also covered...
  53. ncbi A new charge-associated mechanism to account for the production of fragment ions in the high-energy CID spectra of fatty acids
    David J Harvey
    Department of Biochemistry, Oxford Glycobiology Institute, Oxford, United Kingdom
    J Am Soc Mass Spectrom 16:280-90. 2005
    ....
  54. ncbi Structural analysis of alpha-Gal and new non-Gal carbohydrate epitopes from specific pathogen-free miniature pig kidney
    Yun Gon Kim
    Interdisciplinary Program for Biochemical Engineering and Biotechnology, Seoul National University, Seoul, Korea
    Proteomics 8:2596-610. 2008
    ..High-mannose type glycans were also abundant (35-43%) but appeared to be ionized more efficiently than the complex glycans by ESI than by MALDI...
  55. ncbi Reversed-phase ion-pairing liquid chromatography/ion trap mass spectrometry for the analysis of negatively charged, derivatized glycans
    Lynn A Gennaro
    Department of Chemistry and Barnett Institute, Northeastern University, 360 Huntington Avenue, Boston, MA 02115, USA
    Rapid Commun Mass Spectrom 17:1528-34. 2003
    ..With the use of mass spectrometric detection for glycan identity, this allowed relative quantitation of individual components...
  56. ncbi Structural analysis of oligosaccharides by atmospheric pressure matrix-assisted laser desorption/ionisation quadrupole ion trap mass spectrometry
    Colin S Creaser
    Department of Chemistry and Physics, Nottingham Trent University, Clifton Lane, Nottingham NG11 8NS, UK
    Rapid Commun Mass Spectrom 16:176-84. 2002
    ..The use of MSn (n = 3, 4) on these complex molecules enabled structural information to be elucidated that confirms data observed in the MS/MS spectra...
  57. ncbi Structural characterization of the N-glycan moiety and site of glycosylation in vitellogenin from the decapod crustacean Cherax quadricarinatus
    Isam Khalaila
    Institute for Medical Physics and Biophysics University of Münster, Robert Koch Str 31 D 48149, Munster, Germany
    Glycobiology 14:767-74. 2004
    ..Three of the consensus sites for N-glycosylation-namely, Asn(152), Asn(160) and Asn(2493)-were glycosylated with the high-mannose glycans, Man(5-9)GlcNAc(2), and the glucose-capped oligosaccharide Glc(1)Man(9)GlcNAc(2)...
  58. ncbi Glycosylation of human pancreatic ribonuclease: differences between normal and tumor states
    Rosa Peracaula
    Departament de Biologia, Universitat de Girona, Campus de Montilivi s n 17071, Girona, Spain
    Glycobiology 13:227-44. 2003
    ....
  59. ncbi Altered glycosylation pattern allows the distinction between prostate-specific antigen (PSA) from normal and tumor origins
    Rosa Peracaula
    Unitat de Bioquímica i Biologia Molecular, Departament de Biologia, Universitat de Girona, Campus de Montilivi s n 17071, Girona, Spain
    Glycobiology 13:457-70. 2003
    ..These carbohydrate differences allow a distinction to be made between PSA from normal and tumor origins and suggest a valuable biochemical tool for diagnosis and follow-up purposes...
  60. ncbi Glycoprotein structural genomics: solving the glycosylation problem
    Veronica T Chang
    Nuffield Department of Clinical Medicine and MRC Human Immunology Unit, Weatherall Institute of Molecular Medicine, University of Oxford, Oxford OX3 9DS, United Kingdom
    Structure 15:267-73. 2007
    ..Since the scalability of transient mammalian expression is now comparable to that of bacterial systems, this approach should relieve one of the major bottlenecks in structural genomic analysis...
  61. ncbi Sialylation of urinary prothrombin fragment 1 is implicated as a contributory factor in the risk of calcium oxalate kidney stone formation
    Dawn Webber
    Department of Chemistry, University of Cape Town, South Africa
    FEBS J 273:3024-37. 2006
    ....
  62. ncbi Oligosaccharides modulate the apoptotic activity of glycodelin
    Rajesh Jayachandran
    Department of Biochemistry, Indian Institute of Science, Balgalore 560012, India
    Glycobiology 16:1052-63. 2006
    ....
  63. ncbi Glycan analysis of monoclonal antibodies secreted in deposition disorders indicates that subsets of plasma cells differentially process IgG glycans
    Lone A Omtvedt
    Department of Molecular Biosciences, University of Oslo, Postboks 1041 Blindern, 0316 Oslo, Norway
    Arthritis Rheum 54:3433-40. 2006
    ....
  64. ncbi Glycosylation of serum ribonuclease 1 indicates a major endothelial origin and reveals an increase in core fucosylation in pancreatic cancer
    Sílvia Barrabés
    Unitat de Bioquímica i Biologia Molecular, Departament de Biologia, Universitat de Girona, Campus de Montilivi, Girona 17071, Spain
    Glycobiology 17:388-400. 2007
    ..RNase 1 from EA.hy926 was then purified and presented a glycosylation profile very similar to that from serum RNase 1, suggesting that endothelial cells are the main source of this enzyme...
  65. ncbi Capillary electrophoresis/electrospray ion trap mass spectrometry for the analysis of negatively charged derivatized and underivatized glycans
    Lynn A Gennaro
    Department of Chemistry and Barnett Institute, Northeastern University, Boston, MA 02115, USA
    Rapid Commun Mass Spectrom 16:192-200. 2002
    ..This technique presents a complementary method to existing methodologies for the profiling of glycan mixtures...
  66. ncbi Contrasting glycosylation profiles between Fab and Fc of a human IgG protein studied by electrospray ionization mass spectrometry
    Yusuke Mimura
    Division of Immunity and Infection, Medical School, Edgbaston, Birmingham, B15 2TT, UK
    J Immunol Methods 326:116-26. 2007
    ..Thus, combination of the two endoglycosidases can provide a simple means of glycan analysis of both Fab and Fc by ESI-MS, which may contribute to the development of therapeutic IgG with customized glycan profiles...
  67. ncbi Changes of serum glycans during sepsis and acute pancreatitis
    Olga Gornik
    Department of Biochemistry and Molecular Biology, University of Zagreb Faculty of Pharmacy and Biochemistry, 10000, Zagreb, Croatia
    Glycobiology 17:1321-32. 2007
    ....
  68. ncbi Function and glycosylation of plant-derived antiviral monoclonal antibody
    Kisung Ko
    Biotechnology Foundation Laboratories at Thomas Jefferson University, 1020 Locust Street, JAH, Philadelphia, PA 19107, USA
    Proc Natl Acad Sci U S A 100:8013-8. 2003
    ..The mAbP was as efficient as HRIG for post-exposure prophylaxis against rabies virus in hamsters, indicating that differences in N-glycosylation do not affect the efficacy of the antibody in this model...
  69. ncbi The carbohydrate moiety of serum IgM from Atlantic cod (Gadus morhua L.)
    Bergljot Magnadottir
    Institute for Experimental Pathology, University of Iceland, Reykjavik, Iceland
    Fish Shellfish Immunol 12:209-27. 2002
    ..The carbohydrate moiety of cod IgM was shown to provide protection against protease digestion, and partial deglycosylation abolished the antigen binding property of natural cod anti-TNP-BSA antibody...
  70. ncbi Localization and characterization of polysialic acid-containing N-linked glycans from bovine NCAM
    Maren von der Ohe
    , University of Hamburg, D-20246 Hamburg, Germany
    Glycobiology 12:47-63. 2002
    ..In conclusion, we observed a structural variability and high regional selectivity for the PSA-glycans attached to the NCAM molecule that are most likely influencing its biological functions...
  71. ncbi Monitoring endoplasmic reticulum-to-Golgi traffic of a plant calreticulin by protein glycosylation analysis
    Lorella Navazio
    Dipartimento di Biologia, Universita di Padova, Via U Bassi 58 B, 35131 Padova, Italy
    Biochemistry 41:14141-9. 2002
    ..The final fate of the protein after its complete maturation is still obscure...
  72. ncbi Differential effects of alpha subunit Asparagine56 oligosaccharide structure on equine lutropin and follitropin hybrid conformation and receptor-binding activity
    George R Bousfield
    Department of Biological Sciences, Wichita State University, Wichita, Kansas 67260, USA
    Biochemistry 43:10817-33. 2004
    ..Oligosaccharide removal altered the conformation of most hybrids, suggesting that alphaAsn(82) oligosaccharide (located in alphaL3) also influenced gonadotropin conformation...
  73. ncbi Differentiation between sulphated and phosphated carbohydrates in low-resolution matrix-assisted laser desorption/ionization mass spectra
    David J Harvey
    Rapid Commun Mass Spectrom 19:287-8. 2005
  74. ncbi All-or-none N-glycosylation in primate follicle-stimulating hormone beta-subunits
    George R Bousfield
    Wichita State University, Wichita, KS, United States
    Mol Cell Endocrinol 260:40-8. 2007
    ..Two primate species exhibited the same all-or-none pattern of pituitary FSHbeta glycosylation...
  75. ncbi Plant N-glycan profiling of minute amounts of material
    Martial Seveno
    CNRS FRE 3090, IFRMP 23, Universite de Rouen, 76821 Mont Saint Aignan Cedex, France Medicago Inc, Quebec, QC G1V 3V9, Canada
    Anal Biochem 379:66-72. 2008
    ....
  76. ncbi The identification and characterization of xenoantigenic nonhuman carbohydrate sequences in membrane proteins from porcine kidney
    Yun-Gon Kim
    Interdisciplinary Program of Biochemical Engineering and Biotechnology, Seoul National University, Seoul, Korea
    Proteomics 6:1133-42. 2006
    ..This total glycan profile of the membrane proteins from porcine kidney will thus provide important information for the study of molecular interactions between antigenic carbohydrates and proteins in xenotransplantation...
  77. ncbi Remarkable selective glycosylation of the immunoglobulin variable region in follicular lymphoma
    Katy J McCann
    Genetic Vaccine Group, Cancer Sciences Division, University of Southampton School of Medicine, Southampton, UK
    Mol Immunol 45:1567-72. 2008
    ..The remarkable selective glycosylation within the heavy chain V region gene of FL apparently permits only limited processing to oligomannose at somatically mutated motifs, creating a feature exploitable by GC lymphomas...