Daniel Maclean

Summary

Affiliation: John Innes Centre
Country: UK

Publications

  1. ncbi PhosCalc: a tool for evaluating the sites of peptide phosphorylation from mass spectrometer data
    Daniel Maclean
    The Sainsbury Laboratory, John Innes Centre, Norwich Research Park, Colney Lane, Norwich, NR4 7UH, UK
    BMC Res Notes 1:30. 2008
  2. ncbi Evidence for large complex networks of plant short silencing RNAs
    Daniel Maclean
    The Sainsbury Laboratory, John Innes Centre, Norwich, United Kingdom
    PLoS ONE 5:e9901. 2010
  3. ncbi Finding sRNA generative locales from high-throughput sequencing data with NiBLS
    Daniel Maclean
    The Sainsbury Laboratory, John Innes Centre, Colney Lane, Norwich NR47UH, UK
    BMC Bioinformatics 11:93. 2010
  4. ncbi A draft genome sequence and functional screen reveals the repertoire of type III secreted proteins of Pseudomonas syringae pathovar tabaci 11528
    David J Studholme
    The Sainsbury Laboratory, Norwich, UK
    BMC Genomics 10:395. 2009
  5. ncbi A Boolean model of the Pseudomonas syringae hrp regulon predicts a tightly regulated system
    Daniel Maclean
    The Sainsbury Laboratory, John Innes Centre, Norwich, United Kingdom
    PLoS ONE 5:e9101. 2010
  6. ncbi Gee Fu: a sequence version and web-services database tool for genomic assembly, genome feature and NGS data
    Ricardo Ramirez-Gonzalez
    The Genome Analysis Centre, Norwich Research Park, Colney Lane, Norwich, UK, NR4 7UH
    Bioinformatics 27:2754-5. 2011
  7. ncbi A putative phosphatase, LSF1, is required for normal starch turnover in Arabidopsis leaves
    Sylviane Comparot-Moss
    John Innes Centre, Norwich Research Park, Norwich NR4 7UH, United Kingdom
    Plant Physiol 152:685-97. 2010
  8. ncbi Genome evolution following host jumps in the Irish potato famine pathogen lineage
    Sylvain Raffaele
    The Sainsbury Laboratory, Norwich Research Park, Norwich NR4 7UH, UK
    Science 330:1540-3. 2010
  9. ncbi Application of 'next-generation' sequencing technologies to microbial genetics
    Daniel Maclean
    The Sainsbury Laboratory, Norwich NR4 7UH, United Kingdom
    Nat Rev Microbiol 7:287-96. 2009
  10. ncbi Phosphoproteomic analysis of nuclei-enriched fractions from Arabidopsis thaliana
    Alexandra M E Jones
    The Sainsbury Laboratory, Norwich Research Park, Colney Lane, Norwich, United Kingdom
    J Proteomics 72:439-51. 2009

Collaborators

Detail Information

Publications10

  1. ncbi PhosCalc: a tool for evaluating the sites of peptide phosphorylation from mass spectrometer data
    Daniel Maclean
    The Sainsbury Laboratory, John Innes Centre, Norwich Research Park, Colney Lane, Norwich, NR4 7UH, UK
    BMC Res Notes 1:30. 2008
    ..A corresponding user-provided mass spectrum is examined to determine which putative b and y ions have support in the spectrum and a probability score is calculated for each combination of phosphorylation sites...
  2. ncbi Evidence for large complex networks of plant short silencing RNAs
    Daniel Maclean
    The Sainsbury Laboratory, John Innes Centre, Norwich, United Kingdom
    PLoS ONE 5:e9901. 2010
    ....
  3. ncbi Finding sRNA generative locales from high-throughput sequencing data with NiBLS
    Daniel Maclean
    The Sainsbury Laboratory, John Innes Centre, Colney Lane, Norwich NR47UH, UK
    BMC Bioinformatics 11:93. 2010
    ..Currently, there is a paucity of methods for finding small RNA generative locales...
  4. ncbi A draft genome sequence and functional screen reveals the repertoire of type III secreted proteins of Pseudomonas syringae pathovar tabaci 11528
    David J Studholme
    The Sainsbury Laboratory, Norwich, UK
    BMC Genomics 10:395. 2009
    ..P. syringae pathovar tabaci naturally causes disease on wild tobacco, the model member of the Solanaceae, a family that includes many crop species as well as on soybean...
  5. ncbi A Boolean model of the Pseudomonas syringae hrp regulon predicts a tightly regulated system
    Daniel Maclean
    The Sainsbury Laboratory, John Innes Centre, Norwich, United Kingdom
    PLoS ONE 5:e9101. 2010
    ..Simulated gene "knock out" experiments with the model predict that HrpL is a central information processing point within the network...
  6. ncbi Gee Fu: a sequence version and web-services database tool for genomic assembly, genome feature and NGS data
    Ricardo Ramirez-Gonzalez
    The Genome Analysis Centre, Norwich Research Park, Colney Lane, Norwich, UK, NR4 7UH
    Bioinformatics 27:2754-5. 2011
    ..Gee Fu provides a platform for storing and sharing different versions of an assembly and associated features that can be accessed and updated by bench biologists and bioinformaticians in ways that are easy and useful for each...
  7. ncbi A putative phosphatase, LSF1, is required for normal starch turnover in Arabidopsis leaves
    Sylviane Comparot-Moss
    John Innes Centre, Norwich Research Park, Norwich NR4 7UH, United Kingdom
    Plant Physiol 152:685-97. 2010
    ..The lsf1 mutant displays neither of these phenotypes. The phenotype of the lsf1/sex4 double mutant also differs from that of both single mutants in several respects. We discuss the possible role of the LSF1 protein in starch degradation...
  8. ncbi Genome evolution following host jumps in the Irish potato famine pathogen lineage
    Sylvain Raffaele
    The Sainsbury Laboratory, Norwich Research Park, Norwich NR4 7UH, UK
    Science 330:1540-3. 2010
    ..These results demonstrate that dynamic repeat-rich genome compartments underpin accelerated gene evolution following host jumps in this pathogen lineage...
  9. ncbi Application of 'next-generation' sequencing technologies to microbial genetics
    Daniel Maclean
    The Sainsbury Laboratory, Norwich NR4 7UH, United Kingdom
    Nat Rev Microbiol 7:287-96. 2009
    ..In this article, we review the capabilities of high-throughput sequencing technologies and discuss the many options for getting useful information from the data...
  10. ncbi Phosphoproteomic analysis of nuclei-enriched fractions from Arabidopsis thaliana
    Alexandra M E Jones
    The Sainsbury Laboratory, Norwich Research Park, Colney Lane, Norwich, United Kingdom
    J Proteomics 72:439-51. 2009
    ..Intriguingly, we also identified phosphorylation sites on several proteins associated with Golgi vesicle trafficking such as the exocyst complex, and speculate that these may be involved in cell plate formation during cytokinesis...