Morris A Swertz

Summary

Affiliation: University of Groningen
Country: The Netherlands

Publications

  1. ncbi Towards the integration of mouse databases - definition and implementation of solutions to two use-cases in mouse functional genomics
    Michael Gruenberger
    Department of Physiology, Development and Neuroscience, University of Cambridge, Downing Street, Cambridge CB2 3EG, UK
    BMC Res Notes 3:16. 2010
  2. ncbi OntoCAT--simple ontology search and integration in Java, R and REST/JavaScript
    Tomasz Adamusiak
    European Bioinformatics Institute, Wellcome Trust Genome Campus, Cambridge, CB10 1SD, UK
    BMC Bioinformatics 12:218. 2011
  3. ncbi XGAP: a uniform and extensible data model and software platform for genotype and phenotype experiments
    Morris A Swertz
    Genomics Coordination Center, Department of Genetics, University Medical Center Groningen and University of Groningen, Groningen, The Netherlands
    Genome Biol 11:R27. 2010
  4. ncbi The MOLGENIS toolkit: rapid prototyping of biosoftware at the push of a button
    Morris A Swertz
    Genomics Coordination Center, Groningen Bioinformatics Center, University of Groningen and Department of Genetics, University Medical Center Groningen, P O Box 30001, 9700 RB Groningen, The Netherlands
    BMC Bioinformatics 11:S12. 2010
  5. ncbi designGG: an R-package and web tool for the optimal design of genetical genomics experiments
    Yang Li
    Groningen Bioinformatics Center, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, Haren, The Netherlands
    BMC Bioinformatics 10:188. 2009
  6. ncbi A high-throughput processing service for retention time alignment of complex proteomics and metabolomics LC-MS data
    Isthiaq Ahmad
    Analytical Biochemistry, Department of Pharmacy, University of Groningen, Groningen, The Netherlands
    Bioinformatics 27:1176-8. 2011
  7. ncbi Molecular Genetics Information System (MOLGENIS): alternatives in developing local experimental genomics databases
    Morris A Swertz
    Groningen Bioinformatics Center, Faculty of Medical Sciences and Faculty of Mathematics and Natural Sciences, University of Groningen, Groningen, The Netherlands
    Bioinformatics 20:2075-83. 2004
  8. ncbi Neurodegenerative diseases: Lessons from genome-wide screens in small model organisms
    Tjakko J van Ham
    Department of Genetics, University Medical Centre Groningen and University of Groningen, Groningen, The Netherlands
    EMBO Mol Med 1:360-70. 2009
  9. ncbi The international dystrophic epidermolysis bullosa patient registry: an online database of dystrophic epidermolysis bullosa patients and their COL7A1 mutations
    Peter C van den Akker
    Department of Genetics, University Medical Center Groningen, University of Groningen, Groningen, The Netherlands
    Hum Mutat 32:1100-7. 2011

Collaborators

Detail Information

Publications9

  1. ncbi Towards the integration of mouse databases - definition and implementation of solutions to two use-cases in mouse functional genomics
    Michael Gruenberger
    Department of Physiology, Development and Neuroscience, University of Cambridge, Downing Street, Cambridge CB2 3EG, UK
    BMC Res Notes 3:16. 2010
    ..abstract:..
  2. ncbi OntoCAT--simple ontology search and integration in Java, R and REST/JavaScript
    Tomasz Adamusiak
    European Bioinformatics Institute, Wellcome Trust Genome Campus, Cambridge, CB10 1SD, UK
    BMC Bioinformatics 12:218. 2011
    ..This makes it relatively difficult to access each ontology source separately, map their contents to research data, and much of this effort is being replicated across different research groups...
  3. ncbi XGAP: a uniform and extensible data model and software platform for genotype and phenotype experiments
    Morris A Swertz
    Genomics Coordination Center, Department of Genetics, University Medical Center Groningen and University of Groningen, Groningen, The Netherlands
    Genome Biol 11:R27. 2010
    ..Current functionality includes tools ranging from eQTL analysis in mouse to genome-wide association studies in humans...
  4. ncbi The MOLGENIS toolkit: rapid prototyping of biosoftware at the push of a button
    Morris A Swertz
    Genomics Coordination Center, Groningen Bioinformatics Center, University of Groningen and Department of Genetics, University Medical Center Groningen, P O Box 30001, 9700 RB Groningen, The Netherlands
    BMC Bioinformatics 11:S12. 2010
    ..We here present MOLGENIS, a generic, open source, software toolkit to quickly produce the bespoke MOLecular GENetics Information Systems needed...
  5. ncbi designGG: an R-package and web tool for the optimal design of genetical genomics experiments
    Yang Li
    Groningen Bioinformatics Center, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, Haren, The Netherlands
    BMC Bioinformatics 10:188. 2009
    ..The optimal design of such genetical genomics experiments in a cost-efficient and effective way is not trivial...
  6. ncbi A high-throughput processing service for retention time alignment of complex proteomics and metabolomics LC-MS data
    Isthiaq Ahmad
    Analytical Biochemistry, Department of Pharmacy, University of Groningen, Groningen, The Netherlands
    Bioinformatics 27:1176-8. 2011
    ..myexperiment.org/workflows/1283.html. Command line tool is available at http://www.nbpp.nl/Warp2D_commandline.zip. CONTACT: p.l.horvatovich@rug.nl SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online...
  7. ncbi Molecular Genetics Information System (MOLGENIS): alternatives in developing local experimental genomics databases
    Morris A Swertz
    Groningen Bioinformatics Center, Faculty of Medical Sciences and Faculty of Mathematics and Natural Sciences, University of Groningen, Groningen, The Netherlands
    Bioinformatics 20:2075-83. 2004
    ..Here, we report on the decision process for the case of a molecular genetics group establishing a microarray laboratory...
  8. ncbi Neurodegenerative diseases: Lessons from genome-wide screens in small model organisms
    Tjakko J van Ham
    Department of Genetics, University Medical Centre Groningen and University of Groningen, Groningen, The Netherlands
    EMBO Mol Med 1:360-70. 2009
    ....
  9. ncbi The international dystrophic epidermolysis bullosa patient registry: an online database of dystrophic epidermolysis bullosa patients and their COL7A1 mutations
    Peter C van den Akker
    Department of Genetics, University Medical Center Groningen, University of Groningen, Groningen, The Netherlands
    Hum Mutat 32:1100-7. 2011
    ..Altogether, this registry will greatly benefit the DEB patients...