J Tamames

Summary

Publications

  1. ncbi Text mining for metabolic pathways, signaling cascades, and protein networks
    Robert Hoffmann
    National Center for Biotechnology, CNB-CSIC, Darwin 3, Cantoblanco, 28049 Madrid, Spain
    Sci STKE 2005:pe21. 2005
  2. ncbi Estimating the extent of horizontal gene transfer in metagenomic sequences
    Javier Tamames
    Instituto Cavanilles de Biodiversidad y Biologia Evolutiva, Universidad de Valencia, Poligono la Coma s n, 46980 Paterna Valencia, Spain
    BMC Genomics 9:136. 2008
  3. ncbi Text detective: a rule-based system for gene annotation in biomedical texts
    Javier Tamames
    Alma Bioinformatics S, L, Ronda de Poniente 4, 28750 Tres Cantos, Madrid, Spain
    BMC Bioinformatics 6:S10. 2005
  4. ncbi The success (or not) of HUGO nomenclature
    Javier Tamames
    Genome Biol 7:402. 2006
  5. ncbi Evolution of gene order conservation in prokaryotes
    J Tamames
    Centro de Astrobiologia, INTA CSIC, Carretera de Ajalvir Km, 4, 28850 Torrejon de Ardoz, Madrid, Spain
    Genome Biol 2:RESEARCH0020. 2001
  6. ncbi Bringing gene order into bacterial shape
    J Tamames
    Centro de Astrobiologia, INTA CSIC, 28850 Torrejon de Ardoz, Madrid, Spain
    Trends Genet 17:124-6. 2001

Detail Information

Publications6

  1. ncbi Text mining for metabolic pathways, signaling cascades, and protein networks
    Robert Hoffmann
    National Center for Biotechnology, CNB-CSIC, Darwin 3, Cantoblanco, 28049 Madrid, Spain
    Sci STKE 2005:pe21. 2005
    ..The next challenge is the generation of comprehensive information regarding the general function of signaling pathways and protein interaction networks...
  2. ncbi Estimating the extent of horizontal gene transfer in metagenomic sequences
    Javier Tamames
    Instituto Cavanilles de Biodiversidad y Biologia Evolutiva, Universidad de Valencia, Poligono la Coma s n, 46980 Paterna Valencia, Spain
    BMC Genomics 9:136. 2008
    ..However, the methods that have been commonly used for the study of HGT are not suitable for metagenomic samples. Therefore it is important to develop new methods or to adapt existing ones to be used with metagenomic sequences...
  3. ncbi Text detective: a rule-based system for gene annotation in biomedical texts
    Javier Tamames
    Alma Bioinformatics S, L, Ronda de Poniente 4, 28750 Tres Cantos, Madrid, Spain
    BMC Bioinformatics 6:S10. 2005
    ..The complexity and ambiguity of gene nomenclature makes this a very difficult task...
  4. ncbi The success (or not) of HUGO nomenclature
    Javier Tamames
    Genome Biol 7:402. 2006
    ..This study attempts to evaluate the success of HUGO nomenclature for human genes. The results indicate that HUGO guidelines are not supported by the scientific community...
  5. ncbi Evolution of gene order conservation in prokaryotes
    J Tamames
    Centro de Astrobiologia, INTA CSIC, Carretera de Ajalvir Km, 4, 28850 Torrejon de Ardoz, Madrid, Spain
    Genome Biol 2:RESEARCH0020. 2001
    ..Comprehensive studies of gene order are one way of elucidating the nature of these maintaining forces...
  6. ncbi Bringing gene order into bacterial shape
    J Tamames
    Centro de Astrobiologia, INTA CSIC, 28850 Torrejon de Ardoz, Madrid, Spain
    Trends Genet 17:124-6. 2001
    ..We conclude that the relationships between these genes are not random and might reflect significant events in the evolution of the coupling between growth and division in bacteria...