Shu Miaw Chaw

Summary

Affiliation: Academia Sinica
Country: Taiwan

Publications

  1. ncbi Transfer of chloroplast genomic DNA to mitochondrial genome occurred at least 300 MYA
    Daryi Wang
    Research Center for Biodiversity, Academia Sinica, Taipei, Taiwan
    Mol Biol Evol 24:2040-8. 2007
  2. ncbi Dynamics and evolution of the inverted repeat-large single copy junctions in the chloroplast genomes of monocots
    Rui Jiang Wang
    South China Botanical Garden, Chinese Academy of Sciences, Guangzhou 510650, China
    BMC Evol Biol 8:36. 2008
  3. ncbi Dating the monocot-dicot divergence and the origin of core eudicots using whole chloroplast genomes
    Shu Miaw Chaw
    Institute of Botany, Academia Sinica, 128 Sec 2 Academy Road, Taipei 115, Taiwan
    J Mol Evol 58:424-41. 2004
  4. ncbi A phylogeny of cycads (Cycadales) inferred from chloroplast matK gene, trnK intron, and nuclear rDNA ITS region
    Shu Miaw Chaw
    Institute of Botany, Academia Sinica, Taipei, Taiwan
    Mol Phylogenet Evol 37:214-34. 2005
  5. ncbi The mitochondrial genome of the gymnosperm Cycas taitungensis contains a novel family of short interspersed elements, Bpu sequences, and abundant RNA editing sites
    Shu Miaw Chaw
    Research Center for Biodiversity, Academia Sinica, Taipei, Taiwan
    Mol Biol Evol 25:603-15. 2008
  6. ncbi Chloroplast genome (cpDNA) of Cycas taitungensis and 56 cp protein-coding genes of Gnetum parvifolium: insights into cpDNA evolution and phylogeny of extant seed plants
    Chung Shien Wu
    Research Center for Biodiversity, Academia Sinica, Taipei, Taiwan
    Mol Biol Evol 24:1366-79. 2007
  7. ncbi Comparative chloroplast genomics reveals the evolution of Pinaceae genera and subfamilies
    Ching Ping Lin
    Department of Life Sciences and Institute of Genome Sciences, National Yang Ming University, Taipei, Taiwan
    Genome Biol Evol 2:504-17. 2010
  8. ncbi Loss of different inverted repeat copies from the chloroplast genomes of Pinaceae and cupressophytes and influence of heterotachy on the evaluation of gymnosperm phylogeny
    Chung Shien Wu
    Biodiversity Research Center, Academia Sinica, Taipei, Taiwan
    Genome Biol Evol 3:1284-95. 2011
  9. ncbi Comparative chloroplast genomes of pinaceae: insights into the mechanism of diversified genomic organizations
    Chung Shien Wu
    Biodiversity Research Center, Academia Sinica, Taipei, Taiwan
    Genome Biol Evol 3:309-19. 2011
  10. ncbi Evolution of reduced and compact chloroplast genomes (cpDNAs) in gnetophytes: selection toward a lower-cost strategy
    Chung Shien Wu
    School of Forestry and Resource Conservation, National Taiwan University, Taipei, Taiwan
    Mol Phylogenet Evol 52:115-24. 2009

Collaborators

  • Arthur Chun Chieh Shih
  • Wen Hsiung Li
  • Rui Jiang Wang
  • Feng Chi Chen
  • Chung Shien Wu
  • Ching Ping Lin
  • Ya nan Wang
  • Chi Yao Hsu
  • Daryi Wang
  • Chung-Shien Wu
  • Ya-Nan Wang
  • Shu-Mei Liu
  • Ching-Chun Chang
  • Wung Yang Shieh
  • Ya Yi Huang
  • Jen Pan Huang
  • Chih Yao Hsu
  • Yu Ting Lai
  • Yu-Wei Wu
  • Shu Mei Liu
  • Yu Wei Wu
  • Chia-Hsiung Cheng
  • Chien-Chang Chang
  • Hong-Hwa Chen
  • Teh-Yuan Chow
  • I-Pin Lin
  • Hsien-Chia Lin
  • Chung-Yen Lin
  • Wen-Huei Chen
  • Yi-Wen Chen
  • Hsiu Hui Chiu
  • Yi Wen Chen
  • Hsiu-Hui Chiu

Detail Information

Publications15

  1. ncbi Transfer of chloroplast genomic DNA to mitochondrial genome occurred at least 300 MYA
    Daryi Wang
    Research Center for Biodiversity, Academia Sinica, Taipei, Taiwan
    Mol Biol Evol 24:2040-8. 2007
    ..Our observations support the proposition of Richly and Leister (2004) that "primary insertions of organellar DNAs are large and then diverge and fragment over evolutionary time."..
  2. ncbi Dynamics and evolution of the inverted repeat-large single copy junctions in the chloroplast genomes of monocots
    Rui Jiang Wang
    South China Botanical Garden, Chinese Academy of Sciences, Guangzhou 510650, China
    BMC Evol Biol 8:36. 2008
    ..Therefore, we compared the organizations of genes flanking two IR-LSC junctions in 123 angiosperm representatives to uncover the evolutionary dynamics of IR-LSC junctions in basal angiosperms and monocots...
  3. ncbi Dating the monocot-dicot divergence and the origin of core eudicots using whole chloroplast genomes
    Shu Miaw Chaw
    Institute of Botany, Academia Sinica, 128 Sec 2 Academy Road, Taipei 115, Taiwan
    J Mol Evol 58:424-41. 2004
    ..These estimates indicate that both the monocot-dicot divergence and the core eudicot's age are older than their respective fossil records...
  4. ncbi A phylogeny of cycads (Cycadales) inferred from chloroplast matK gene, trnK intron, and nuclear rDNA ITS region
    Shu Miaw Chaw
    Institute of Botany, Academia Sinica, Taipei, Taiwan
    Mol Phylogenet Evol 37:214-34. 2005
    ..The matK gene and ITS/5.8S region contain more useful information than the trnK intron in addressing phylogeny. Redelimitations of Zamiaceae, Stangeriaceae, subfamily Encephalartoideae and subtribe Macrozamiineae are necessary...
  5. ncbi The mitochondrial genome of the gymnosperm Cycas taitungensis contains a novel family of short interspersed elements, Bpu sequences, and abundant RNA editing sites
    Shu Miaw Chaw
    Research Center for Biodiversity, Academia Sinica, Taipei, Taiwan
    Mol Biol Evol 25:603-15. 2008
    ..The evolutionary origin and invasion/duplication mechanism of the Bpu sequences in Cycas mtDNA are hypothesized and discussed...
  6. ncbi Chloroplast genome (cpDNA) of Cycas taitungensis and 56 cp protein-coding genes of Gnetum parvifolium: insights into cpDNA evolution and phylogeny of extant seed plants
    Chung Shien Wu
    Research Center for Biodiversity, Academia Sinica, Taipei, Taiwan
    Mol Biol Evol 24:1366-79. 2007
    ..More cpDNA data from non-Pinaceae conifers are necessary to justify whether the gnetifer or gnepines hypothesis is valid and to generate solid structural evidence for the monophyly of extant gymnosperms...
  7. ncbi Comparative chloroplast genomics reveals the evolution of Pinaceae genera and subfamilies
    Ching Ping Lin
    Department of Life Sciences and Institute of Genome Sciences, National Yang Ming University, Taipei, Taiwan
    Genome Biol Evol 2:504-17. 2010
    ..Specifically, our views on subfamilial classifications differ from previous studies in terms of the rank of Cedrus and with recognition of more than two subfamilies...
  8. ncbi Loss of different inverted repeat copies from the chloroplast genomes of Pinaceae and cupressophytes and influence of heterotachy on the evaluation of gymnosperm phylogeny
    Chung Shien Wu
    Biodiversity Research Center, Academia Sinica, Taipei, Taiwan
    Genome Biol Evol 3:1284-95. 2011
    ..In contrast, removal of high heterotachous genes from data sets is simple and can increase confidence in evaluating the phylogeny of gymnosperms...
  9. ncbi Comparative chloroplast genomes of pinaceae: insights into the mechanism of diversified genomic organizations
    Chung Shien Wu
    Biodiversity Research Center, Academia Sinica, Taipei, Taiwan
    Genome Biol Evol 3:309-19. 2011
    ....
  10. ncbi Evolution of reduced and compact chloroplast genomes (cpDNAs) in gnetophytes: selection toward a lower-cost strategy
    Chung Shien Wu
    School of Forestry and Resource Conservation, National Taiwan University, Taipei, Taiwan
    Mol Phylogenet Evol 52:115-24. 2009
    ..The smallest C-values in gnetophyte nuclear DNAs and the competitive or resource-poor situations encountered by gnetophytes further suggest a critical need for an economic strategy...
  11. ncbi The Complete Chloroplast Genome of Ginkgo biloba Reveals the Mechanism of Inverted Repeat Contraction
    Ching Ping Lin
    Biodiversity Research Center, Academia Sinica, Taipei, Taiwan
    Genome Biol Evol 4:374-81. 2012
    ..Our data reveal that ginkgo possesses several unique features that contribute to our understanding of the cpDNA evolution in seed plants...
  12. ncbi Vibrio ruber sp. nov., a red, facultatively anaerobic, marine bacterium isolated from sea water
    Wung Yang Shieh
    Institute of Oceanography, National Taiwan University, PO Box 23 13, Taipei, Taiwan
    Int J Syst Evol Microbiol 53:479-84. 2003
    ..gazogenes and strain VR1T. The name Vibrio ruber sp. nov. is proposed for the novel species, with strain VR1T (=CCRC 17186T =JCM 11486T) as the type strain...
  13. ncbi Opposite evolutionary effects between different alternative splicing patterns
    Feng-Chi Chen
    Mol Biol Evol 24:1443-6. 2007
    ..Therefore, the previous view that ASEs accelerate evolution of protein subsequences needs to be modified...
  14. ncbi Plant Gene and Alternatively Spliced Variant Annotator. A plant genome annotation pipeline for rice gene and alternatively spliced variant identification with cross-species expressed sequence tag conservation from seven plant species
    Feng Chi Chen
    Division of Biostatistics and Bioinformatics, National Health Research Institute, Miaoli County 350, Taiwan
    Plant Physiol 143:1086-95. 2007
    ..The data and the Web-based interface, RiceViewer, are available for public access at http://RiceViewer.genomics.sinica.edu.tw/...
  15. ncbi The chloroplast genome of Phalaenopsis aphrodite (Orchidaceae): comparative analysis of evolutionary rate with that of grasses and its phylogenetic implications
    Ching-Chun Chang
    Institute of Biotechnology, National Cheng Kung University, Tainan, Taiwan
    Mol Biol Evol 23:279-91. 2006
    ..We demonstrated that these conflicting angiosperm phylogenies are most probably linked to the transitional sites at all codon positions, especially at the third one where the strong base-composition bias and saturation effect take place...