Christian J A Sigrist

Summary

Affiliation: Swiss Institute of Bioinformatics
Country: Switzerland

Publications

  1. ncbi PROSITE, a protein domain database for functional characterization and annotation
    Christian J A Sigrist
    Structural Biology and Bioinformatics Department, University of Geneva, Swiss Institute of Bioinformatics, Centre Medical Universitaire, CH 1211 Geneva 4, Switzerland
    Nucleic Acids Res 38:D161-6. 2010
  2. ncbi ProRule: a new database containing functional and structural information on PROSITE profiles
    Christian J A Sigrist
    Swiss Institute of Bioinformatics SIB, 1 rue Michel Servet, CH 1211 Geneva 4, Switzerland
    Bioinformatics 21:4060-6. 2005
  3. ncbi PROSITE: a documented database using patterns and profiles as motif descriptors
    Christian J A Sigrist
    Swiss Institute of Bioinformatics CMU, University of Geneva
    Brief Bioinform 3:265-74. 2002
  4. ncbi The 20 years of PROSITE
    Nicolas Hulo
    Swiss Institute of Bioinformatics SIB, Centre Medical Universitaire, Structural Biology and Bioinformatics Department, University of Geneva, 1 rue Michel Servet, CH 1211 Geneva, Switzerland
    Nucleic Acids Res 36:D245-9. 2008
  5. ncbi Recent improvements to the PROSITE database
    Nicolas Hulo
    Swiss Institute of Bioinformatics SIB, CMU, University of Geneva, 1 rue Michel Servet, 1211 Geneva 4, Switzerland
    Nucleic Acids Res 32:D134-7. 2004
  6. ncbi ScanProsite: detection of PROSITE signature matches and ProRule-associated functional and structural residues in proteins
    Edouard De Castro
    Swiss Institute of Bioinformatics, 1 rue Michel Servet, CH 1211 Geneva 4, Switzerland
    Nucleic Acids Res 34:W362-5. 2006
  7. ncbi The PROSITE database, its status in 2002
    Laurent Falquet
    Swiss Institute of Bioinformatics, Swiss Institute for Experimental Cancer Research (ISREC, CH-1066 Epalinges /Lausanne, Switzerland
    Nucleic Acids Res 30:235-8. 2002
  8. ncbi The PROSITE database
    Nicolas Hulo
    Swiss Institute of Bioinformatics SIB, Centre Medical Universitaire, 1 rue Michel Servet, 1211 Geneva 4, Switzerland
    Nucleic Acids Res 34:D227-30. 2006
  9. ncbi PeroxiBase: a database with new tools for peroxidase family classification
    Dominique Koua
    Swiss Institute of Bioinformatics, Swiss Prot group, CMU, 1 rue Michel Servet, Laboratory of Plant Physiology, University of Geneva, Quai Ernest Ansermet 30, CH 1211 Geneva, Switzerland
    Nucleic Acids Res 37:D261-6. 2009
  10. ncbi Automated annotation of microbial proteomes in SWISS-PROT
    Alexandre Gattiker
    Swiss Prot group, Swiss Institute of Bioinformatics, 1 rue Michel Servet, CH 1211 Geneva 4, Switzerland
    Comput Biol Chem 27:49-58. 2003

Detail Information

Publications14

  1. ncbi PROSITE, a protein domain database for functional characterization and annotation
    Christian J A Sigrist
    Structural Biology and Bioinformatics Department, University of Geneva, Swiss Institute of Bioinformatics, Centre Medical Universitaire, CH 1211 Geneva 4, Switzerland
    Nucleic Acids Res 38:D161-6. 2010
    ..The latest version of PROSITE (release 20.54, of 22 September 2009) contains 1308 patterns, 863 profiles and 869 ProRules. PROSITE is accessible at: http://www.expasy.org/prosite/...
  2. ncbi ProRule: a new database containing functional and structural information on PROSITE profiles
    Christian J A Sigrist
    Swiss Institute of Bioinformatics SIB, 1 rue Michel Servet, CH 1211 Geneva 4, Switzerland
    Bioinformatics 21:4060-6. 2005
    ..Increase the discriminatory power of PROSITE profiles to facilitate function determination and provide biologically relevant information about domains detected by profiles for the annotation of proteins...
  3. ncbi PROSITE: a documented database using patterns and profiles as motif descriptors
    Christian J A Sigrist
    Swiss Institute of Bioinformatics CMU, University of Geneva
    Brief Bioinform 3:265-74. 2002
    ..In return, PROSITE is used to help annotate SWISS-PROT entries. The main characteristics and the techniques of family and domain identification used by PROSITE are reviewed in this paper...
  4. ncbi The 20 years of PROSITE
    Nicolas Hulo
    Swiss Institute of Bioinformatics SIB, Centre Medical Universitaire, Structural Biology and Bioinformatics Department, University of Geneva, 1 rue Michel Servet, CH 1211 Geneva, Switzerland
    Nucleic Acids Res 36:D245-9. 2008
    ..Over the past 2 years, about 200 domains have been added, and now 53% of UniProtKB/Swiss-Prot entries (release 54.2 of 11 September 2007) have a PROSITE match. PROSITE is available on the web at: http://www.expasy.org/prosite/...
  5. ncbi Recent improvements to the PROSITE database
    Nicolas Hulo
    Swiss Institute of Bioinformatics SIB, CMU, University of Geneva, 1 rue Michel Servet, 1211 Geneva 4, Switzerland
    Nucleic Acids Res 32:D134-7. 2004
    ..The latest version of PROSITE (release 18.17 of November 30, 2003) contains 1676 entries. The database is accessible at http://www.expasy.org/prosite/...
  6. ncbi ScanProsite: detection of PROSITE signature matches and ProRule-associated functional and structural residues in proteins
    Edouard De Castro
    Swiss Institute of Bioinformatics, 1 rue Michel Servet, CH 1211 Geneva 4, Switzerland
    Nucleic Acids Res 34:W362-5. 2006
    ..Several output modes are available including simple text views and a rich mode providing an interactive match and feature viewer with a graphical representation of results...
  7. ncbi The PROSITE database, its status in 2002
    Laurent Falquet
    Swiss Institute of Bioinformatics, Swiss Institute for Experimental Cancer Research (ISREC, CH-1066 Epalinges /Lausanne, Switzerland
    Nucleic Acids Res 30:235-8. 2002
    ....
  8. ncbi The PROSITE database
    Nicolas Hulo
    Swiss Institute of Bioinformatics SIB, Centre Medical Universitaire, 1 rue Michel Servet, 1211 Geneva 4, Switzerland
    Nucleic Acids Res 34:D227-30. 2006
    ..1 of September 27, 2005) have a cross-reference to a PROSITE entry. The database is accessible at http://www.expasy.org/prosite/...
  9. ncbi PeroxiBase: a database with new tools for peroxidase family classification
    Dominique Koua
    Swiss Institute of Bioinformatics, Swiss Prot group, CMU, 1 rue Michel Servet, Laboratory of Plant Physiology, University of Geneva, Quai Ernest Ansermet 30, CH 1211 Geneva, Switzerland
    Nucleic Acids Res 37:D261-6. 2009
    ..The peroxidase classification tool called PeroxiScan is accessible at the following address: http://peroxibase.isb-sib.ch/peroxiscan.php...
  10. ncbi Automated annotation of microbial proteomes in SWISS-PROT
    Alexandre Gattiker
    Swiss Prot group, Swiss Institute of Bioinformatics, 1 rue Michel Servet, CH 1211 Geneva 4, Switzerland
    Comput Biol Chem 27:49-58. 2003
    ..The results of this annotation are integrated in SWISS-PROT, and a website is provided at http://www.expasy.org/sprot/hamap/...
  11. ncbi InterPro: an integrated documentation resource for protein families, domains and functional sites
    Nicola J Mulder
    EMBL Outstation, European Bioinformatics Institute, Hinxton, Cambridge, UK
    Brief Bioinform 3:225-35. 2002
    ..Each InterPro entry lists all the matches against SWISS-PROT and TrEMBL (2,141,621 InterPro hits from 586,124 SWISS-PROT and TrEMBL protein sequences). The database is freely accessible for text- and sequence-based searches...
  12. ncbi InterPro, progress and status in 2005
    Nicola J Mulder
    EMBL Outstation European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK
    Nucleic Acids Res 33:D201-5. 2005
    ..The database is available for text- and sequence-based searches via a webserver (http://www.ebi.ac.uk/interpro), and for download by anonymous FTP (ftp://ftp.ebi.ac.uk/pub/databases/interpro)...
  13. ncbi New developments in the InterPro database
    Nicola J Mulder
    EMBL Outstation European Bioinformatics Institute Hinxton, Cambridge, UK
    Nucleic Acids Res 35:D224-8. 2007
    ..ebi.ac.uk/interpro), and for download by anonymous FTP (ftp://ftp.ebi.ac.uk/pub/databases/interpro). The InterProScan search tool is now also available via a web service at http://www.ebi.ac.uk/Tools/webservices/WSInterProScan.html...
  14. ncbi The InterPro Database, 2003 brings increased coverage and new features
    Nicola J Mulder
    EMBL Outstation European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK
    Nucleic Acids Res 31:315-8. 2003
    ..The database is available via a webserver (http://www.ebi.ac.uk/interpro) and anonymous FTP (ftp://ftp.ebi.ac.uk/pub/databases/interpro)...