Adam Ameur

Summary

Affiliation: Uppsala University
Country: Sweden

Publications

  1. ncbi Differential binding and co-binding pattern of FOXA1 and FOXA3 and their relation to H3K4me3 in HepG2 cells revealed by ChIP-seq
    Mehdi Motallebipour
    Department of Genetics and Pathology, Uppsala University, Rudbeck Laboratory, Dag Hammarskjölds väg 20, Uppsala SE 75185, Sweden
    Genome Biol 10:R129. 2009
  2. ncbi Identification of novel exons and transcribed regions by chimpanzee transcriptome sequencing
    Anna Wetterbom
    Department of Genetics and Pathology, Rudbeck Laboratory, Uppsala University, SE 751 85 Uppsala, Sweden
    Genome Biol 11:R78. 2010
  3. ncbi Global and unbiased detection of splice junctions from RNA-seq data
    Adam Ameur
    Department of Genetics and Pathology, Rudbeck Laboratory, Uppsala University, Uppsala, Sweden
    Genome Biol 11:R34. 2010
  4. ncbi Total RNA sequencing reveals nascent transcription and widespread co-transcriptional splicing in the human brain
    Adam Ameur
    Department of Immunology, Genetics and Pathology, Science for Life Laboratory Uppsala, Rudbeck Laboratory, Uppsala University, Uppsala, Sweden
    Nat Struct Mol Biol 18:1435-40. 2011
  5. ncbi Ultra-deep sequencing of mouse mitochondrial DNA: mutational patterns and their origins
    Adam Ameur
    Department of Immunology, Genetics, and Pathology, SciLifeLab Uppsala, Rudbeck Laboratory, Uppsala University, Uppsala, Sweden
    PLoS Genet 7:e1002028. 2011

Collaborators

  • Anna Wetterbom
  • Max Ingman
  • Mehdi Motallebipour
  • Claes Wadelius
  • Kalicharan Patra
  • Melissa A Barker
  • Jonathan Mangion
  • Kevin J McKernan
  • Madhu Sudhan Reddy Bysani
  • Ola Wallerman
  • Jan Komorowski

Detail Information

Publications5

  1. ncbi Differential binding and co-binding pattern of FOXA1 and FOXA3 and their relation to H3K4me3 in HepG2 cells revealed by ChIP-seq
    Mehdi Motallebipour
    Department of Genetics and Pathology, Uppsala University, Rudbeck Laboratory, Dag Hammarskjölds väg 20, Uppsala SE 75185, Sweden
    Genome Biol 10:R129. 2009
    ..The forkhead box/winged helix family members FOXA1, FOXA2, and FOXA3 are of high importance in development and specification of the hepatic linage and the continued expression of liver-specific genes...
  2. ncbi Identification of novel exons and transcribed regions by chimpanzee transcriptome sequencing
    Anna Wetterbom
    Department of Genetics and Pathology, Rudbeck Laboratory, Uppsala University, SE 751 85 Uppsala, Sweden
    Genome Biol 11:R78. 2010
    ..We profile the chimpanzee transcriptome by using deep sequencing of cDNA from brain and liver, aiming to quantify expression of known genes and to identify novel transcribed regions...
  3. ncbi Global and unbiased detection of splice junctions from RNA-seq data
    Adam Ameur
    Department of Genetics and Pathology, Rudbeck Laboratory, Uppsala University, Uppsala, Sweden
    Genome Biol 11:R34. 2010
    ..Our method also reports genomic rearrangements such as insertions and deletions...
  4. ncbi Total RNA sequencing reveals nascent transcription and widespread co-transcriptional splicing in the human brain
    Adam Ameur
    Department of Immunology, Genetics and Pathology, Science for Life Laboratory Uppsala, Rudbeck Laboratory, Uppsala University, Uppsala, Sweden
    Nat Struct Mol Biol 18:1435-40. 2011
    ..Our data show that sequencing of total RNA provides unique insight into the transcriptional processes in the cell, with particular importance for normal brain development...
  5. ncbi Ultra-deep sequencing of mouse mitochondrial DNA: mutational patterns and their origins
    Adam Ameur
    Department of Immunology, Genetics, and Pathology, SciLifeLab Uppsala, Rudbeck Laboratory, Uppsala University, Uppsala, Sweden
    PLoS Genet 7:e1002028. 2011
    ..Our results from studies of mice thus indicate that most somatic mtDNA mutations occur as replication errors during development and do not result from damage accumulation in adult life...