Lincoln D Stein

Summary

Publications

  1. ncbi Bioinformatics: alive and kicking
    Lincoln D Stein
    Ontario Institute for Cancer Research, Toronto, ON, M5G 0A3, Canada
    Genome Biol 9:114. 2008
  2. ncbi A standard variation file format for human genome sequences
    Martin G Reese
    Omicia, 2200 Powell Street, Suite 525, Emeryville, CA 94608, USA
    Genome Biol 11:R88. 2010
  3. ncbi PeakRanger: a cloud-enabled peak caller for ChIP-seq data
    Xin Feng
    Department of Biomedical Engineering, Stony Brook University, Stony Brook, NY 11794, USA
    BMC Bioinformatics 12:139. 2011
  4. ncbi Localizing triplet periodicity in DNA and cDNA sequences
    Liya Wang
    Cold Spring Harbor Laboratory, Williams 5, Cold Spring Harbor, NY 11724, USA
    BMC Bioinformatics 11:550. 2010
  5. ncbi The case for cloud computing in genome informatics
    Lincoln D Stein
    Ontario Institute for Cancer Research, Toronto, ON M5G 0A3, Canada
    Genome Biol 11:207. 2010
  6. ncbi WormBase: a comprehensive resource for nematode research
    Todd W Harris
    Ontario Institute for Cancer Research, Toronto, ON, Canada
    Nucleic Acids Res 38:D463-7. 2010

Collaborators

  • Xin Feng
  • Liya Wang
  • Martin G Reese
  • Todd W Harris
  • Robert Grossman
  • Karen Yook
  • Arun Rangarajan
  • Paul Davis
  • Mark Yandell
  • John Spieth
  • Andrei Petcherski
  • Fidel Salas
  • Margaret Duesbury
  • Fiona Cunningham
  • Anthony Rogers
  • Raymond Lee
  • Wen J Chen
  • Paul W Sternberg
  • Juancarlos Chan
  • Karen Eilbeck
  • Gabor T Marth
  • Daniel Wang
  • Hans Michael Muller
  • Gary Schindelman
  • Kimberly Van Auken
  • Paul Flicek
  • Ruihua Fang
  • Philip Ozersky
  • Jolene Fernandes
  • Norie De La Cruz
  • Igor Antoshechkin
  • Cecilia Nakamura
  • Mary Ann Tuli
  • Barry Moore
  • Erich M Schwarz
  • Richard Durbin
  • Darin Blasiar
  • Michael Han
  • Colin Batchelor
  • Xiaodong Wang
  • Ranjana Kishore
  • Gary Williams
  • Tamberlyn Bieri

Detail Information

Publications6

  1. ncbi Bioinformatics: alive and kicking
    Lincoln D Stein
    Ontario Institute for Cancer Research, Toronto, ON, M5G 0A3, Canada
    Genome Biol 9:114. 2008
    ..Bioinformatics has become too central to biology to be left to specialist bioinformaticians. Biologists are all bioinformaticians now...
  2. ncbi A standard variation file format for human genome sequences
    Martin G Reese
    Omicia, 2200 Powell Street, Suite 525, Emeryville, CA 94608, USA
    Genome Biol 11:R88. 2010
    ....
  3. ncbi PeakRanger: a cloud-enabled peak caller for ChIP-seq data
    Xin Feng
    Department of Biomedical Engineering, Stony Brook University, Stony Brook, NY 11794, USA
    BMC Bioinformatics 12:139. 2011
    ..Other algorithms are limited in their configurability, performance on large data sets, and ability to distinguish closely-spaced peaks...
  4. ncbi Localizing triplet periodicity in DNA and cDNA sequences
    Liya Wang
    Cold Spring Harbor Laboratory, Williams 5, Cold Spring Harbor, NY 11724, USA
    BMC Bioinformatics 11:550. 2010
    ..Here, we report a technique that provides higher-resolution identification of these boundaries, and use the technique to explore the biological correlates of TP regions in the genome of the model organism C. elegans...
  5. ncbi The case for cloud computing in genome informatics
    Lincoln D Stein
    Ontario Institute for Cancer Research, Toronto, ON M5G 0A3, Canada
    Genome Biol 11:207. 2010
    ..With DNA sequencing now getting cheaper more quickly than data storage or computation, the time may have come for genome informatics to migrate to the cloud...
  6. ncbi WormBase: a comprehensive resource for nematode research
    Todd W Harris
    Ontario Institute for Cancer Research, Toronto, ON, Canada
    Nucleic Acids Res 38:D463-7. 2010
    ..Here, we describe new species and data types now available at WormBase. In addition, we detail enhancements to our curatorial pipeline and website infrastructure to accommodate new genomes and an extensive user base...