Michael L Tress

Summary

Country: Spain

Publications

  1. ncbi SQUARE--determining reliable regions in sequence alignments
    Michael L Tress
    CNB CSIC, Calle Darwin, Cantoblanco, 28049 Madrid, Spain
    Bioinformatics 20:974-5. 2004
  2. ncbi Predicting reliable regions in protein alignments from sequence profiles
    Michael L Tress
    Protein Design Group, Centro Nacional de Biotechnologia, CNB CSIC, Cantoblanco, 28049 Madrid, Spain
    J Mol Biol 330:705-18. 2003
  3. ncbi An analysis of the Sargasso Sea resource and the consequences for database composition
    Michael L Tress
    Protein Design Group, CNB CSIC, Calle Darwin, Cantoblanco 28049 Madrid, Spain
    BMC Bioinformatics 7:213. 2006
  4. ncbi firestar--prediction of functionally important residues using structural templates and alignment reliability
    Gonzalo Lopez
    Structural Biology and Biocomputing Program, Spanish National Cancer Research Centre CNIO Melchor Fernández Almagro, 3, E 28029, Madrid, Spain
    Nucleic Acids Res 35:W573-7. 2007
  5. ncbi Assessment of intramolecular contact predictions for CASP7
    Jose M G Izarzugaza
    Structural Biology and Biocomputing Programme, Spanish National Cancer Research Centre, 3E 28029 Madrid, Spain
    Proteins 69:152-8. 2007
  6. ncbi The implications of alternative splicing in the ENCODE protein complement
    Michael L Tress
    Structural Computational Biology Programme, Spanish National Cancer Research Centre, E 28029 Madrid, Spain
    Proc Natl Acad Sci U S A 104:5495-500. 2007
  7. ncbi Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
    Ewan Birney
    Nature 447:799-816. 2007
  8. ncbi Determination and validation of principal gene products
    Michael L Tress
    Structural Biology and Biocomputing Programme, Spanish National Cancer Research Centre, Madrid, Spain
    Bioinformatics 24:11-7. 2008

Detail Information

Publications9

  1. ncbi SQUARE--determining reliable regions in sequence alignments
    Michael L Tress
    CNB CSIC, Calle Darwin, Cantoblanco, 28049 Madrid, Spain
    Bioinformatics 20:974-5. 2004
    ..In addition, the scores can be compared against template secondary structure, conserved residues and important sites...
  2. ncbi Predicting reliable regions in protein alignments from sequence profiles
    Michael L Tress
    Protein Design Group, Centro Nacional de Biotechnologia, CNB CSIC, Cantoblanco, 28049 Madrid, Spain
    J Mol Biol 330:705-18. 2003
    ..This suggests that many binding sites that are present in both target and template sequences are in sequence-conserved regions and that there is the possibility of translating reliability to binding site prediction...
  3. ncbi An analysis of the Sargasso Sea resource and the consequences for database composition
    Michael L Tress
    Protein Design Group, CNB CSIC, Calle Darwin, Cantoblanco 28049 Madrid, Spain
    BMC Bioinformatics 7:213. 2006
    ....
  4. ncbi firestar--prediction of functionally important residues using structural templates and alignment reliability
    Gonzalo Lopez
    Structural Biology and Biocomputing Program, Spanish National Cancer Research Centre CNIO Melchor Fernández Almagro, 3, E 28029, Madrid, Spain
    Nucleic Acids Res 35:W573-7. 2007
    ..We found this facility particularly useful during the recent assessment of CASP7 function prediction. Availability: http://firedb.bioinfo.cnio.es/Php/FireStar.php...
  5. ncbi Assessment of intramolecular contact predictions for CASP7
    Jose M G Izarzugaza
    Structural Biology and Biocomputing Programme, Spanish National Cancer Research Centre, 3E 28029 Madrid, Spain
    Proteins 69:152-8. 2007
    ..In general, contacts inferred from 3D structural predictions are similar in accuracy to those predicted by contact prediction methods. However, contact prediction methods were more accurate for some targets...
  6. ncbi The implications of alternative splicing in the ENCODE protein complement
    Michael L Tress
    Structural Computational Biology Programme, Spanish National Cancer Research Centre, E 28029 Madrid, Spain
    Proc Natl Acad Sci U S A 104:5495-500. 2007
    ....
  7. ncbi Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
    Ewan Birney
    Nature 447:799-816. 2007
    ..Together, these studies are defining a path for pursuit of a more comprehensive characterization of human genome function...
  8. ncbi Determination and validation of principal gene products
    Michael L Tress
    Structural Biology and Biocomputing Programme, Spanish National Cancer Research Centre, Madrid, Spain
    Bioinformatics 24:11-7. 2008
    ..The pipeline was able to determine a principal isoform for 83% of a set of well-annotated genes with multiple variants...