Herbert Auer

Summary

Country: Spain

Publications

  1. ncbi Gene-resolution analysis of DNA copy number variation using oligonucleotide expression microarrays
    Herbert Auer
    Center for Childhood Cancer, Columbus Children s Research Institute and The Ohio State University, Columbus, Ohio, USA
    BMC Genomics 8:111. 2007
  2. ncbi Transcriptional profiling of the megabladder mouse: a unique model of bladder dysmorphogenesis
    Sunita Singh
    Center for Cell and Developmental Biology, Columbus Children s Research Institute, Columbus, Ohio 43205, USA
    Dev Dyn 237:170-86. 2008
  3. ncbi Expression Profiling Using Affymetrix GeneChip Microarrays
    Herbert Auer
    Columbus Children s Research Institute, Columbus, OH, USA
    Methods Mol Biol 509:35-46. 2009
  4. ncbi Gene expression and functional evidence of epithelial-to-mesenchymal transition in papillary thyroid carcinoma invasion
    Vasily Vasko
    Department of Medicine, Arthur G James Comprehensive Cancer Center, Ohio State University, Columbus, OH 43210, USA
    Proc Natl Acad Sci U S A 104:2803-8. 2007
  5. ncbi Innate and adaptive immune activation in the brain of MPS IIIB mouse model
    Julianne DiRosario
    Center for Gene Therapy, Columbus, Ohio 43205, USA
    J Neurosci Res 87:978-90. 2009
  6. ncbi Disruption of ZAS3 in mice alters NF-kappaB and AP-1 DNA binding and T-cell development
    Carl E Allen
    Department of Pediatrics and Center for Cell and Developmental Biology, Columbus Children s Research Institute, Columbus, OH 43205, USA
    Gene Expr 14:83-100. 2007
  7. ncbi 20q11.1 amplification in giant-cell tumor of bone: Array CGH, FISH, and association with outcome
    Laura T Smith
    Division of Human Cancer Genetics, Department of Molecular Virology, Immunology and Medical Genetics, Arthur James Cancer Hospital and Richard Solove Research Institute, The Ohio State University, Columbus, OH, USA
    Genes Chromosomes Cancer 45:957-66. 2006
  8. ncbi Quantification of DNA methylation in electrofluidics chips (Bio-COBRA)
    Romulo M Brena
    Department of Molecular Genetics, The Ohio State University, 420 West 12th Ave, Room 435, Columbus, Ohio 43210, USA
    Nat Protoc 1:52-8. 2006
  9. ncbi MYC amplification and polysomy 8 in chondrosarcoma: array comparative genomic hybridization, fluorescent in situ hybridization, and association with outcome
    Carl Morrison
    Division of Orthopedic Oncology, Department of Pathology, Center for Biostatistics, The Arthur James Cancer Hospital and Richard Solove Research Institute, The Ohio State University Medical School, Columbus, OH, USA
    J Clin Oncol 23:9369-76. 2005
  10. ncbi Acute myeloid leukemia with complex karyotypes and abnormal chromosome 21: Amplification discloses overexpression of APP, ETS2, and ERG genes
    Claudia D Baldus
    Human Cancer Genetics Program, Ohio State University Comprehensive Cancer Center, Columbus, OH 43210, USA
    Proc Natl Acad Sci U S A 101:3915-20. 2004

Collaborators

  • Christoph Plass
  • Natarajan Muthusamy
  • Yang Liu
  • Carl Morrison
  • Haiyan Fu
  • Yan Yang
  • Matthew D Ringel
  • Lai Chu Wu
  • Carl E Allen
  • Claudia D Baldus
  • Guido Marcucci
  • Kathryn S Lilley
  • Norma Nowak
  • Kevin L Knudtson
  • Karl Kornacker
  • Julianne DiRosario
  • Sunita Singh
  • Bernhard Schiedlmeier
  • Vasily Vasko
  • Agnes Viale
  • Laura T Smith
  • Jorge Guzman
  • Romulo M Brena
  • Sandya Liyanarachchi
  • Albert de la Chapelle
  • Hidewaki Nakagawa
  • Stefan Amatschek
  • Douglas M McCarty
  • David L Newsom
  • Erin Divers
  • Chuansong Wang
  • Jonathan Etter
  • Victoria Best
  • Alyssa Charrier
  • Peter Jukkola
  • Monalee Saha
  • Carlton M Bates
  • Ihab Ismail
  • Melissa Robinson
  • Kirk M McHugh
  • Michael L Robinson
  • Ana Ribeiro
  • Motoyasu Saji
  • Victoria Savchenko
  • George Grills
  • Chin Yi Chu
  • Chin-Yi Chu
  • Juan Li
  • Hannes Klump
  • William Scouten
  • Alexander Larin
  • Aldo Massimi
  • Huiling He
  • Wolfram Ostertag
  • Ana Cristina Santos
  • Chandi Griffin
  • Allan V Espinosa
  • Gary L Francis
  • Christopher Baum
  • Natalia Moncaut
  • Moises Mallo
  • Greg Khitrov
  • Susan Hester
  • Jay Tiesman
  • Dietrich Lesinski
  • Andrew I Brooks
  • Bill Ward
  • Arturo J Cardounel
  • Jun Ge Yu
  • Jacqueline E Wunderlich
  • Susan Long
  • Gary Bos
  • Joel Mayerson
  • Christina McKeegan
  • Jeff Palatini
  • Andrey Bozarov
  • Fievos L Christofi
  • Gregory Young
  • David Suster
  • Zacharias Suntres
  • Helen Cooke
  • Iveta Grants
  • Susie Jones
  • Asad Javed
  • Nehad Mohammed
  • Hamdy H Hassanain
  • Najma Javed
  • Martin Schreiber
  • Ramana V Davuluri
  • Sonja Vogl

Detail Information

Publications18

  1. ncbi Gene-resolution analysis of DNA copy number variation using oligonucleotide expression microarrays
    Herbert Auer
    Center for Childhood Cancer, Columbus Children s Research Institute and The Ohio State University, Columbus, Ohio, USA
    BMC Genomics 8:111. 2007
    ..Current aCGH methods have limited resolution, sensitivity and reproducibility. Microarrays for aCGH are available only for a few organisms and combination of aCGH data with expression data is cumbersome...
  2. ncbi Transcriptional profiling of the megabladder mouse: a unique model of bladder dysmorphogenesis
    Sunita Singh
    Center for Cell and Developmental Biology, Columbus Children s Research Institute, Columbus, Ohio 43205, USA
    Dev Dyn 237:170-86. 2008
    ....
  3. ncbi Expression Profiling Using Affymetrix GeneChip Microarrays
    Herbert Auer
    Columbus Children s Research Institute, Columbus, OH, USA
    Methods Mol Biol 509:35-46. 2009
    ....
  4. ncbi Gene expression and functional evidence of epithelial-to-mesenchymal transition in papillary thyroid carcinoma invasion
    Vasily Vasko
    Department of Medicine, Arthur G James Comprehensive Cancer Center, Ohio State University, Columbus, OH 43210, USA
    Proc Natl Acad Sci U S A 104:2803-8. 2007
    ..We conclude that EMT is common in PTC invasion and that vimentin regulates thyroid cancer EMT in vitro...
  5. ncbi Innate and adaptive immune activation in the brain of MPS IIIB mouse model
    Julianne DiRosario
    Center for Gene Therapy, Columbus, Ohio 43205, USA
    J Neurosci Res 87:978-90. 2009
    ..Our data indicate that immune responses contribute greatly to the neuropathology of MPS IIIB and should be considered as an adjunct treatment in future therapeutic developments for optimal therapeutic effect...
  6. ncbi Disruption of ZAS3 in mice alters NF-kappaB and AP-1 DNA binding and T-cell development
    Carl E Allen
    Department of Pediatrics and Center for Cell and Developmental Biology, Columbus Children s Research Institute, Columbus, OH 43205, USA
    Gene Expr 14:83-100. 2007
    ..In CD3+ ZAS3-/- thymocytes, the CD4/ CD8 ratio was decreased and CD69 expression was decreased. In peripheral CD4+ ZAS3-/- lymphocytes we observed an increased number of memory T cells...
  7. ncbi 20q11.1 amplification in giant-cell tumor of bone: Array CGH, FISH, and association with outcome
    Laura T Smith
    Division of Human Cancer Genetics, Department of Molecular Virology, Immunology and Medical Genetics, Arthur James Cancer Hospital and Richard Solove Research Institute, The Ohio State University, Columbus, OH, USA
    Genes Chromosomes Cancer 45:957-66. 2006
    ..001) was the only factor to reach statistical significance. 20q11.1 amplification can be used as a marker of prognostic importance in GCTb. We propose TPX2 as a candidate oncogene in the core-amplified region at 20q11.1...
  8. ncbi Quantification of DNA methylation in electrofluidics chips (Bio-COBRA)
    Romulo M Brena
    Department of Molecular Genetics, The Ohio State University, 420 West 12th Ave, Room 435, Columbus, Ohio 43210, USA
    Nat Protoc 1:52-8. 2006
    ..The Bio-COBRA assay can be performed on 12 samples in less than 1 h. If the protocol is started at the DNA isolation step, however, approximately 48 h would be required to complete the entire procedure...
  9. ncbi MYC amplification and polysomy 8 in chondrosarcoma: array comparative genomic hybridization, fluorescent in situ hybridization, and association with outcome
    Carl Morrison
    Division of Orthopedic Oncology, Department of Pathology, Center for Biostatistics, The Arthur James Cancer Hospital and Richard Solove Research Institute, The Ohio State University Medical School, Columbus, OH, USA
    J Clin Oncol 23:9369-76. 2005
    ..To identify recurrent regions of genomic gain or loss in chondrosarcoma in a clinically relevant and statistically valid fashion. Materials and..
  10. ncbi Acute myeloid leukemia with complex karyotypes and abnormal chromosome 21: Amplification discloses overexpression of APP, ETS2, and ERG genes
    Claudia D Baldus
    Human Cancer Genetics Program, Ohio State University Comprehensive Cancer Center, Columbus, OH 43210, USA
    Proc Natl Acad Sci U S A 101:3915-20. 2004
    ..Our results highlight the value of molecularly dissecting leukemic cells with complex karyotypes...
  11. ncbi Tissue-wide expression profiling using cDNA subtraction and microarrays to identify tumor-specific genes
    Stefan Amatschek
    Department of Dermatology, University of Vienna, Vienna, Austria
    Cancer Res 64:844-56. 2004
    ..The gene dendogram clearly separates two groups of genes, those up-regulated such as cyclin B1, TGF-beta 3, B-Myb, Erg2, VCAM-1, and CD44 and those down-regulated such as MIG-6, Esp15, and CAK in patients with short survival time...
  12. ncbi The ABRF MARG microarray survey 2005: taking the pulse of the microarray field
    Kevin L Knudtson
    University of Iowa, DNA Facility, 323 EMRB, Iowa City, IA 52242, USA
    J Biomol Tech 17:176-86. 2006
    ..Presented herein are the results of the MARG 2005 survey; where possible, trends in the field are discussed and compared to data collected from previous surveys...
  13. ncbi Role of cancer-associated stromal fibroblasts in metastatic colon cancer to the liver and their expression profiles
    Hidewaki Nakagawa
    Division of Human Cancer Genetics, Comprehensive Cancer Center, The Ohio State University, Columbus 43210, USA
    Oncogene 23:7366-77. 2004
    ..The distinct molecular expression profiles of cancer-associated fibroblasts in colon cancer metastasis support the notion that these fibroblasts form a favorable microenvironment for cancer cells...
  14. ncbi [Relevance of parasitological examinations for the clinical course, epidemiology and prevention of alveolar echinococcosis - experiences of more than two decades in Austria]
    Herbert Auer
    Abteilung fur Medizinische Parasitologie, Klinisches Institut fur Hygiene und Medizinische Mikrobiologie, MUW, Wien, Austria
    Wien Klin Wochenschr 118:18-26. 2006
    ..In addition, molecular biological tools for the detection of E. multilocularis (as well as E. granulosus strain) specific DNA in surgical resected and bioptic materials complete our diagnostic spectrum of methods...
  15. ncbi Big results from small samples: evaluation of amplification protocols for gene expression profiling
    Agnes Viale
    Bionomics Research and Technology Center, University of Medicine and Dentistry of New Jersey, Piscataway, New Jersey 08857, USA
    J Biomol Tech 18:150-61. 2007
    ..PCR validation showed an interaction of probe sequence on the array and target labeling chemistry, resulting in a chemistry-dependent probe set sensitivity varying over an order of magnitude...
  16. ncbi HOXB4's road map to stem cell expansion
    Bernhard Schiedlmeier
    Department of Experimental Hematology, Hannover Medical School, Carl Neuberg Strasse 1, 30625 Hannover, Germany
    Proc Natl Acad Sci U S A 104:16952-7. 2007
    ..In summary, our results strongly suggest that HOXB4 modulates the response of HSCs to multiple extrinsic signals in a concerted manner, thereby shifting the balance toward stem cell self-renewal...
  17. ncbi ADOA3R as a therapeutic target in experimental colitis: proof by validated high-density oligonucleotide microarray analysis
    Jorge Guzman
    Departments of Anesthesiology, and Cardiothoracic Surgery, Ball State University, Muncie, Indiana, USA
    Inflamm Bowel Dis 12:766-89. 2006
    ..ADOA3R is new potential therapeutic target for inflammatory bowel disease...
  18. ncbi Chipping away at the chip bias: RNA degradation in microarray analysis
    Herbert Auer
    Nat Genet 35:292-3. 2003