Ana Rotter

Summary

Affiliation: National Institute of Biology
Country: Slovenia

Publications

  1. ncbi Adaptation of the MapMan ontology to biotic stress responses: application in solanaceous species
    Ana Rotter
    National Institute of Biology, Vecna pot 111, 1000 Ljubljana, Slovenia
    Plant Methods 3:10. 2007
  2. ncbi Finding differentially expressed genes in two-channel DNA microarray datasets: how to increase reliability of data preprocessing
    Ana Rotter
    Department of Biotechnology and Systems Biology, National Institute of Biology, 1000 Ljubljana, Slovenia
    OMICS 12:171-82. 2008
  3. ncbi Gene expression profiling in susceptible interaction of grapevine with its fungal pathogen Eutypa lata: extending MapMan ontology for grapevine
    Ana Rotter
    National Institute of Biology, Department of Biotechnology and Systems Biology, Vecna pot 111, 1000 Ljubljana, Slovenia
    BMC Plant Biol 9:104. 2009
  4. ncbi Gene expression data analysis using closed item set mining for labeled data
    Ana Rotter
    National Institute of Biology, Department of Biotechnology and Systems Biology, Ljubljana, Slovenia
    OMICS 14:177-86. 2010
  5. ncbi 'Bois noir' phytoplasma induces significant reprogramming of the leaf transcriptome in the field grown grapevine
    Matjaz Hren
    National Institute of Biology, Department of Biotechnology and Systems Biology, Vecna pot 111, 1000 Ljubljana, Slovenia
    BMC Genomics 10:460. 2009
  6. ncbi Revealing fosfomycin primary effect on Staphylococcus aureus transcriptome: modulation of cell envelope biosynthesis and phosphoenolpyruvate induced starvation
    Marko Petek
    Department of Biotechnology and Systems Biology, National Institute of Biology, Vecna pot 111, Ljubljana, SI 1000, Slovenia
    BMC Microbiol 10:159. 2010
  7. ncbi PVY(NTN) elicits a diverse gene expression response in different potato genotypes in the first 12 h after inoculation
    Spela Baebler
    Department of Plant Physiology and Biotechnology, National Institute of Biology, Vecna pot 111, 1000 Ljubljana, Slovenia
    Mol Plant Pathol 10:263-75. 2009
  8. ncbi GMOtrack: generator of cost-effective GMO testing strategies
    Petra Krau Novak
    Jozef Stefan Institute, Department of Knowledge Technologies, Jamova 39, 1000 Ljubljana, Slovenia
    J AOAC Int 92:1739-46. 2009

Detail Information

Publications8

  1. ncbi Adaptation of the MapMan ontology to biotic stress responses: application in solanaceous species
    Ana Rotter
    National Institute of Biology, Vecna pot 111, 1000 Ljubljana, Slovenia
    Plant Methods 3:10. 2007
    ..g. via selected metabolic or other pathways. For some organisms, gene ontologies and data visualization software have been implemented to overcome this problem, whereas for others, software adaptation is yet to be done...
  2. ncbi Finding differentially expressed genes in two-channel DNA microarray datasets: how to increase reliability of data preprocessing
    Ana Rotter
    Department of Biotechnology and Systems Biology, National Institute of Biology, 1000 Ljubljana, Slovenia
    OMICS 12:171-82. 2008
    ..Then the intersection of results, that is, the lists of differentially expressed genes, is used in order to get a more accurate estimation of the genes that were de facto differentially expressed...
  3. ncbi Gene expression profiling in susceptible interaction of grapevine with its fungal pathogen Eutypa lata: extending MapMan ontology for grapevine
    Ana Rotter
    National Institute of Biology, Department of Biotechnology and Systems Biology, Vecna pot 111, 1000 Ljubljana, Slovenia
    BMC Plant Biol 9:104. 2009
    ..Two microarray platforms were designed based on the TIGR Gene Index database and used in several physiological studies...
  4. ncbi Gene expression data analysis using closed item set mining for labeled data
    Ana Rotter
    National Institute of Biology, Department of Biotechnology and Systems Biology, Ljubljana, Slovenia
    OMICS 14:177-86. 2010
    ..The used algorithms are freely available upon request to the authors...
  5. ncbi 'Bois noir' phytoplasma induces significant reprogramming of the leaf transcriptome in the field grown grapevine
    Matjaz Hren
    National Institute of Biology, Department of Biotechnology and Systems Biology, Vecna pot 111, 1000 Ljubljana, Slovenia
    BMC Genomics 10:460. 2009
    ..The gene expression patterns were followed in leaf midribs of grapevine cv. 'Chardonnay' naturally infected with a phytoplasma from the stolbur group 16SrXII-A, which is associated with the grapevine yellows disease 'Bois noir'...
  6. ncbi Revealing fosfomycin primary effect on Staphylococcus aureus transcriptome: modulation of cell envelope biosynthesis and phosphoenolpyruvate induced starvation
    Marko Petek
    Department of Biotechnology and Systems Biology, National Institute of Biology, Vecna pot 111, Ljubljana, SI 1000, Slovenia
    BMC Microbiol 10:159. 2010
    ..The goal of this study was to identify the pathways and processes primarily affected by fosfomycin at the genome-wide transcriptome level to aid development of new drugs...
  7. ncbi PVY(NTN) elicits a diverse gene expression response in different potato genotypes in the first 12 h after inoculation
    Spela Baebler
    Department of Plant Physiology and Biotechnology, National Institute of Biology, Vecna pot 111, 1000 Ljubljana, Slovenia
    Mol Plant Pathol 10:263-75. 2009
    ....
  8. ncbi GMOtrack: generator of cost-effective GMO testing strategies
    Petra Krau Novak
    Jozef Stefan Institute, Department of Knowledge Technologies, Jamova 39, 1000 Ljubljana, Slovenia
    J AOAC Int 92:1739-46. 2009
    ..The proposed GMOtrack approach, publicly available under the terms of the General Public License, can be extended to other domains where complex testing is involved, such as safety and quality assurance in the food supply chain...