H Niki

Summary

Affiliation: Kumamoto University
Country: Japan

Publications

  1. ncbi Subcellular distribution of actively partitioning F plasmid during the cell division cycle in E. coli
    H Niki
    Department of Molecular Cell Biology, Institute of Medical Embryology and Genetics, Kumamoto University School of Medicine, Kumamoto, Japan
    Cell 90:951-7. 1997
  2. ncbi Subcellular localization of plasmids containing the oriC region of the Escherichia coli chromosome, with or without the sopABC partitioning system
    H Niki
    Unit Process and Combined Circuit PRESTO, Japan Science and Technology Corporation JST, Kumamoto
    Mol Microbiol 34:498-503. 1999
  3. ncbi Dynamic organization of chromosomal DNA in Escherichia coli
    H Niki
    Unit Process and Combined Circuit, PRESTO, Japan Science and Technology Corporation JST, Kumamoto, 862 0976, Japan
    Genes Dev 14:212-23. 2000
  4. ncbi [Progressing molecular cell biology in bacteria: chromosome partitioning and cell division]
    H Niki
    Institute of Molecular Embryology and Genetics, Kumamoto University School of Medicine, Japan
    Tanpakushitsu Kakusan Koso 45:153-63. 2000
  5. ncbi Cell cycle-dependent duplication and bidirectional migration of SeqA-associated DNA-protein complexes in E. coli
    S Hiraga
    Department of Molecular Cell Biology, Kumamoto University School of Medicine, Japan
    Mol Cell 1:381-7. 1998
  6. ncbi Identification of two new genes, mukE and mukF, involved in chromosome partitioning in Escherichia coli
    K Yamanaka
    Department of Molecular Cell Biology, Institute of Molecular Embryology and Genetics, Kumamoto University School of Medicine, Japan
    Mol Gen Genet 250:241-51. 1996
  7. ncbi Null mutation of the dam or seqA gene suppresses temperature-sensitive lethality but not hypersensitivity to novobiocin of muk null mutants
    T Onogi
    Department of Molecular Cell Biology, Institute of Molecular Embryology and Genetics, Kumamoto University, Kumamoto 862 0976, Japan
    J Bacteriol 182:5898-901. 2000
  8. ncbi Topology and subcellular localization of FtsH protein in Escherichia coli
    T Tomoyasu
    Department of Molecular Cell Biology, Kumamoto University School of Medicine, Japan
    J Bacteriol 175:1352-7. 1993
  9. ncbi Complex formation of MukB, MukE and MukF proteins involved in chromosome partitioning in Escherichia coli
    M Yamazoe
    Department of Molecular Cell Biology, Institute of Molecular Embryology and Genetics, Kumamoto University School of Medicine, Kuhonji 4 24 1, Kumamoto 862 0976, Japan
    EMBO J 18:5873-84. 1999
  10. ncbi The Escherichia coli FtsH protein is a prokaryotic member of a protein family of putative ATPases involved in membrane functions, cell cycle control, and gene expression
    T Tomoyasu
    Department of Molecular Cell Biology, Kumamoto University School of Medicine, Japan
    J Bacteriol 175:1344-51. 1993

Collaborators

Detail Information

Publications35

  1. ncbi Subcellular distribution of actively partitioning F plasmid during the cell division cycle in E. coli
    H Niki
    Department of Molecular Cell Biology, Institute of Medical Embryology and Genetics, Kumamoto University School of Medicine, Kumamoto, Japan
    Cell 90:951-7. 1997
    ..The sopABC system caused replicated plasmid molecules to be positioned and tethered at the cell quarter sites...
  2. ncbi Subcellular localization of plasmids containing the oriC region of the Escherichia coli chromosome, with or without the sopABC partitioning system
    H Niki
    Unit Process and Combined Circuit PRESTO, Japan Science and Technology Corporation JST, Kumamoto
    Mol Microbiol 34:498-503. 1999
    ..Therefore, we conclude that oriC itself and its flanking regions are not sufficient for positioning the replication origin domain of the E. coli chromosome within the cell...
  3. ncbi Dynamic organization of chromosomal DNA in Escherichia coli
    H Niki
    Unit Process and Combined Circuit, PRESTO, Japan Science and Technology Corporation JST, Kumamoto, 862 0976, Japan
    Genes Dev 14:212-23. 2000
    ..These studies thus suggest that the E. coli chromosome is organized to form a compacted ring structure with the Ori and Ter domains; these domains participate in the cell cycle-dependent localization of the chromosome...
  4. ncbi [Progressing molecular cell biology in bacteria: chromosome partitioning and cell division]
    H Niki
    Institute of Molecular Embryology and Genetics, Kumamoto University School of Medicine, Japan
    Tanpakushitsu Kakusan Koso 45:153-63. 2000
  5. ncbi Cell cycle-dependent duplication and bidirectional migration of SeqA-associated DNA-protein complexes in E. coli
    S Hiraga
    Department of Molecular Cell Biology, Kumamoto University School of Medicine, Japan
    Mol Cell 1:381-7. 1998
    ..The cell cycle-dependent bidirectional migration of SeqA-DNA complexes is quite different from the migration pattern of oriC Dna copies. MukB protein is required for correct localization of SeqA complexes by an unknown mechanism...
  6. ncbi Identification of two new genes, mukE and mukF, involved in chromosome partitioning in Escherichia coli
    K Yamanaka
    Department of Molecular Cell Biology, Institute of Molecular Embryology and Genetics, Kumamoto University School of Medicine, Japan
    Mol Gen Genet 250:241-51. 1996
    ..These results indicate that the MukF, MukE, and MukB proteins are involved in the chromosome partitioning steps, but are not required for mini-F plasmid partitioning...
  7. ncbi Null mutation of the dam or seqA gene suppresses temperature-sensitive lethality but not hypersensitivity to novobiocin of muk null mutants
    T Onogi
    Department of Molecular Cell Biology, Institute of Molecular Embryology and Genetics, Kumamoto University, Kumamoto 862 0976, Japan
    J Bacteriol 182:5898-901. 2000
    ..Null mutation of either dam or seqA suppressed partially the temperature-sensitive lethality but failed to suppress the anucleate cell production and the hypersensitivity to novobiocin caused by muk null mutations...
  8. ncbi Topology and subcellular localization of FtsH protein in Escherichia coli
    T Tomoyasu
    Department of Molecular Cell Biology, Kumamoto University School of Medicine, Japan
    J Bacteriol 175:1352-7. 1993
    ..The average number of FtsH molecules per cell was estimated to be approximately 400...
  9. ncbi Complex formation of MukB, MukE and MukF proteins involved in chromosome partitioning in Escherichia coli
    M Yamazoe
    Department of Molecular Cell Biology, Institute of Molecular Embryology and Genetics, Kumamoto University School of Medicine, Kuhonji 4 24 1, Kumamoto 862 0976, Japan
    EMBO J 18:5873-84. 1999
    ..This suggests that Ca(2+) or Mg(2+) may be required for the formation of a complex consisting of the three Muk proteins, and thus may participate in a particular step during chromosome partitioning...
  10. ncbi The Escherichia coli FtsH protein is a prokaryotic member of a protein family of putative ATPases involved in membrane functions, cell cycle control, and gene expression
    T Tomoyasu
    Department of Molecular Cell Biology, Kumamoto University School of Medicine, Japan
    J Bacteriol 175:1344-51. 1993
    ..g., Sec18p, Pas1p, CDC48p, and TBP-1, which function in protein transport pathways, peroxisome assembly, cell division cycle, and gene expression, respectively. Possible implications of these observations are discussed...
  11. ncbi RNase E polypeptides lacking a carboxyl-terminal half suppress a mukB mutation in Escherichia coli
    M Kido
    Department of Molecular Cell Biology, Institute of Molecular Embryology and Genetics, Kumamoto University School of Medicine, Kumamoto, Japan
    J Bacteriol 178:3917-25. 1996
    ..RNase E and PNPase of the multiprotein complex presumably cooperate for effective processing and turnover of specific substrates, such as mRNAs and other RNAs in vivo...
  12. ncbi Carboxyl terminal region of the MukB protein in Escherichia coli is essential for DNA binding activity
    A Z Saleh
    Department of Molecular Cell Biology, Kumamoto University School of Medicine, Japan
    FEMS Microbiol Lett 143:211-6. 1996
    ..This mutant MukB protein was defective for DNA binding, while the ATP binding activity remained unaffected. A truncated MukB protein that is short of 109 amino acids from the C-terminus failed to bind DNA...
  13. ncbi The assembly and migration of SeqA-Gfp fusion in living cells of Escherichia coli
    T Onogi
    Department of Molecular Cell Biology, Kumamoto University School of Medicine, Japan
    Mol Microbiol 31:1775-82. 1999
    ..Immunoprecipitation of the fusion from cell extracts using anti-Gfp antibody indicated that the fusion was assembled with the wild-type SeqA protein...
  14. ncbi New killing system controlled by two genes located immediately upstream of the mukB gene in Escherichia coli
    J Feng
    Department of Molecular Cell Biology, Kumamoto University School of Medicine, Japan
    Mol Gen Genet 243:136-47. 1994
    ..It was also demonstrated that KicA and KicB can function as a post-segregational killing system, when the genes are transferred from the E. coli chromosome onto a plasmid...
  15. ncbi Bidirectional migration of SeqA-bound hemimethylated DNA clusters and pairing of oriC copies in Escherichia coli
    S Hiraga
    Department of Molecular Cell Biology, Institute of Molecular Embryology and Genetics, Kumamoto University School of Medicine, Kumamoto 862 0976, Japan
    Genes Cells 5:327-41. 2000
    ..A single SeqA focus, localized at midcell, separates into two foci and these foci migrate abruptly in opposite directions...
  16. ncbi Cloning, sequencing, and characterization of multicopy suppressors of a mukB mutation in Escherichia coli
    K Yamanaka
    Department of Molecular Cell Biology, Kumamoto University School of Medicine, Japan
    Mol Microbiol 13:301-12. 1994
    ..Hence, the msmB and msmC genes were renamed cspC and cspE, respectively. Possible mechanisms for suppression of the mukB106 mutation are discussed...
  17. ncbi Two mutant alleles of mukB, a gene essential for chromosome partition in Escherichia coli
    K Yamanaka
    Department of Molecular Cell Biology, Kumamoto University School of Medicine, Japan
    FEMS Microbiol Lett 123:27-31. 1994
    ....
  18. ncbi Identification of the cpdA gene encoding cyclic 3',5'-adenosine monophosphate phosphodiesterase in Escherichia coli
    R Imamura
    Department of Molecular Cell Biology, Institute of Molecular Embryology and Genetics, Kumamoto University School of Medicine, Kumamoto, Kumamoto 862, Japan
    J Biol Chem 271:25423-9. 1996
    ..Our results suggested that regulation of intracellular concentration of cAMP is dependent not only on synthesis of cAMP but also on hydrolysis of cAMP by cAMP phosphodiesterase...
  19. ncbi Multicopy suppressors, mssA and mssB, of an smbA mutation of Escherichia coli
    K Yamanaka
    Department of Molecular Cell Biology, Kumamoto University School of Medicine, Japan
    Mol Gen Genet 243:9-16. 1994
    ..MssA and MssB might also relate to the expression of some of these genes. Multiple copies mssA and mssB suppressed the various phenotypic features of the smbA2 mutant to various extents, suppressing the cold-sensitive growth completely...
  20. ncbi Characterization of translucent segments observed in an smbA mutant of Escherichia coli
    K Yamanaka
    Department of Molecular Cell Biology, Institute of Molecular Embryology and Genetics, Kumamoto University School of Medicine, Japan
    FEMS Microbiol Lett 116:61-6. 1994
    ..Electron microscopic observation revealed that the translucent segments resulted from the enlargement of a periplasmic space by separation of the inner membrane from the peptidoglycan layer and the outer membrane...
  21. ncbi E.coli MukB protein involved in chromosome partition forms a homodimer with a rod-and-hinge structure having DNA binding and ATP/GTP binding activities
    H Niki
    Department of Molecular Cell Biology, Kumamoto University School of Medicine, Japan
    EMBO J 11:5101-9. 1992
    ..Photoaffinity cross-linking experiments showed that MukB binds to ATP and GTP in the presence of Zn2+. Throughout the purification steps, acyl carrier protein was co-purified with MukB...
  22. ncbi Characterization of the smtA gene encoding an S-adenosylmethionine-dependent methyltransferase of Escherichia coli
    K Yamanaka
    Department of Molecular Cell Biology, Kumamoto University School of Medicine, Japan
    FEMS Microbiol Lett 133:59-63. 1995
    ..The smtA gene is not essential for cell growth and its expression is positively regulated by H-NS, an Escherichia coli histone-like protein...
  23. ncbi Defective plasmid partition in ftsH mutants of Escherichia coli
    T Inagawa
    Division of Molecular Cell Biology, Institute of Molecular Embryology and Genetics, Kumamoto University, Japan
    Mol Genet Genomics 265:755-62. 2001
    ..It is likely that altered membrane structure affects the localization or activity of a putative plasmid partitioning apparatus located at positions equivalent to 1/4 and 3/4 of the cell length...
  24. ncbi Identification and characterization of the smbA gene, a suppressor of the mukB null mutant of Escherichia coli
    K Yamanaka
    Department of Molecular Cell Biology, Kumamoto University School of Medicine, Japan
    J Bacteriol 174:7517-26. 1992
    ..The smbA mutants are sensitive to a detergent, sodium dodecyl sulfate, and they show a novel morphological phenotype under nonpermissive conditions, suggesting a defect in specific membrane sites...
  25. ncbi Escherichia coli FtsH is a membrane-bound, ATP-dependent protease which degrades the heat-shock transcription factor sigma 32
    T Tomoyasu
    Department of Molecular Cell Biology, Kumamoto University School of Medicine, Japan
    EMBO J 14:2551-60. 1995
    ..We conclude that FtsH is a novel membrane-bound, ATP-dependent metalloprotease with activity for sigma 32. These findings indicate a new mechanism of gene regulation in E. coli...
  26. ncbi Involvement of DnaK protein in mini-F plasmid replication: temperature-sensitive seg mutations are located in the dnaK gene
    B Ezaki
    Department of Molecular Genetics, Kumamoto University Medical School, Japan
    Mol Gen Genet 218:183-9. 1989
    ..The active dnaK (seg) gene product is therefore essential for replication of the mini-F plasmid at both 30 degrees and 42 degrees C...
  27. ncbi Partitioning of a mini-F plasmid into anucleate cells of the mukB null mutant
    B Ezaki
    Department of Molecular Genetics, Kumamoto University Medical School, Japan
    J Bacteriol 173:6643-6. 1991
    ..In the null mutant, the plasmid was partitioned into both nucleate and anucleate daughter cells, independently of host chromosomes...
  28. ncbi Mutants defective in chromosome partitioning in E. coli
    S Hiraga
    Department of Molecular Genetics, Kumamoto University Medical School, Japan
    Res Microbiol 142:189-94. 1991
    ..The mukC and mukD genes are located at 88 and 41 min of the chromosome map, respectively...
  29. ncbi Structure and function of the ftsH gene in Escherichia coli
    T Ogura
    Department of Molecular Genetics, Kumamoto University Medical School, Japan
    Res Microbiol 142:279-82. 1991
    ..A wild type chromosomal fragment able to complement the sfh mutations was cloned. We also identified another gene (ftsJ) affecting cell division in the region upstream of the ftsH gene...
  30. ncbi The new gene mukB codes for a 177 kd protein with coiled-coil domains involved in chromosome partitioning of E. coli
    H Niki
    Department of Molecular Genetics, Kumamoto University Medical School, Japan
    EMBO J 10:183-93. 1991
    ..At high temperature the mukB null mutants cannot form colonies and many nucleoids are distributed irregularly along elongated cells. We conclude that the MukB protein is required for chromosome partitioning in E. coli...
  31. ncbi New topoisomerase essential for chromosome segregation in E. coli
    J Kato
    Department of Bacteriology, National Institute of Health of Japan, Tokyo
    Cell 63:393-404. 1990
    ..A topA mutation defective in topoisomerase I could be compensated by increasing both the parC and the parE gene dosage. It is suggested that the parC and parE genes code for the subunits of a new topoisomerase, named topo IV...
  32. ncbi Maintenance of plasmids in HU and IHF mutants of Escherichia coli
    T Ogura
    Department of Molecular Genetics, Kumamoto University Medical School, Japan
    Mol Gen Genet 220:197-203. 1990
    ..The mini-P1 plasmid was slightly unstable in the himA-hip mutant, whereas the mini-F plasmid was stable...
  33. ncbi Nucleotide sequence of the tolC gene of Escherichia coli
    H Niki
    Department of Molecular Genetics, Kumamoto University Medical School, Japan
    Nucleic Acids Res 18:5547. 1990
  34. ncbi Chromosome partitioning in Escherichia coli: novel mutants producing anucleate cells
    S Hiraga
    Department of Molecular Genetics, Kumamoto University Medical School, Japan
    J Bacteriol 171:1496-505. 1989
    ..Cloning of the mukA gene indicates that the mukA1 mutation is recessive and that the mukA gene is identical to the tolC gene coding for an outer membrane protein...
  35. ncbi Linear multimer formation of plasmid DNA in Escherichia coli hopE (recD) mutants
    H Niki
    Department of Molecular Genetics, Kumamoto University Medical School, Japan
    Mol Gen Genet 224:1-9. 1990
    ..The recBC xth A mutant is defective in the conjugative type of recombination. Linear plasmid multimers were not detected in the recBC strain. We propose models to account for linear multimer formation of plasmids in various mutants...