Research Topics
Genomes and Genes | H NikiSummaryAffiliation: Kumamoto University Country: Japan Publications
| Collaborators
|
Detail Information
Publications
Subcellular distribution of actively partitioning F plasmid during the cell division cycle in E. coliH Niki
Department of Molecular Cell Biology, Institute of Medical Embryology and Genetics, Kumamoto University School of Medicine, Kumamoto, Japan
Cell 90:951-7. 1997..The sopABC system caused replicated plasmid molecules to be positioned and tethered at the cell quarter sites...
Subcellular localization of plasmids containing the oriC region of the Escherichia coli chromosome, with or without the sopABC partitioning systemH Niki
Unit Process and Combined Circuit PRESTO, Japan Science and Technology Corporation JST, Kumamoto
Mol Microbiol 34:498-503. 1999..Therefore, we conclude that oriC itself and its flanking regions are not sufficient for positioning the replication origin domain of the E. coli chromosome within the cell...
Dynamic organization of chromosomal DNA in Escherichia coliH Niki
Unit Process and Combined Circuit, PRESTO, Japan Science and Technology Corporation JST, Kumamoto, 862 0976, Japan
Genes Dev 14:212-23. 2000..These studies thus suggest that the E. coli chromosome is organized to form a compacted ring structure with the Ori and Ter domains; these domains participate in the cell cycle-dependent localization of the chromosome...
[Progressing molecular cell biology in bacteria: chromosome partitioning and cell division]H Niki
Institute of Molecular Embryology and Genetics, Kumamoto University School of Medicine, Japan
Tanpakushitsu Kakusan Koso 45:153-63. 2000
Cell cycle-dependent duplication and bidirectional migration of SeqA-associated DNA-protein complexes in E. coliS Hiraga
Department of Molecular Cell Biology, Kumamoto University School of Medicine, Japan
Mol Cell 1:381-7. 1998..The cell cycle-dependent bidirectional migration of SeqA-DNA complexes is quite different from the migration pattern of oriC Dna copies. MukB protein is required for correct localization of SeqA complexes by an unknown mechanism...
Identification of two new genes, mukE and mukF, involved in chromosome partitioning in Escherichia coliK Yamanaka
Department of Molecular Cell Biology, Institute of Molecular Embryology and Genetics, Kumamoto University School of Medicine, Japan
Mol Gen Genet 250:241-51. 1996..These results indicate that the MukF, MukE, and MukB proteins are involved in the chromosome partitioning steps, but are not required for mini-F plasmid partitioning...
Null mutation of the dam or seqA gene suppresses temperature-sensitive lethality but not hypersensitivity to novobiocin of muk null mutantsT Onogi
Department of Molecular Cell Biology, Institute of Molecular Embryology and Genetics, Kumamoto University, Kumamoto 862 0976, Japan
J Bacteriol 182:5898-901. 2000..Null mutation of either dam or seqA suppressed partially the temperature-sensitive lethality but failed to suppress the anucleate cell production and the hypersensitivity to novobiocin caused by muk null mutations...
Topology and subcellular localization of FtsH protein in Escherichia coliT Tomoyasu
Department of Molecular Cell Biology, Kumamoto University School of Medicine, Japan
J Bacteriol 175:1352-7. 1993..The average number of FtsH molecules per cell was estimated to be approximately 400...
Complex formation of MukB, MukE and MukF proteins involved in chromosome partitioning in Escherichia coliM Yamazoe
Department of Molecular Cell Biology, Institute of Molecular Embryology and Genetics, Kumamoto University School of Medicine, Kuhonji 4 24 1, Kumamoto 862 0976, Japan
EMBO J 18:5873-84. 1999..This suggests that Ca(2+) or Mg(2+) may be required for the formation of a complex consisting of the three Muk proteins, and thus may participate in a particular step during chromosome partitioning...
The Escherichia coli FtsH protein is a prokaryotic member of a protein family of putative ATPases involved in membrane functions, cell cycle control, and gene expressionT Tomoyasu
Department of Molecular Cell Biology, Kumamoto University School of Medicine, Japan
J Bacteriol 175:1344-51. 1993..g., Sec18p, Pas1p, CDC48p, and TBP-1, which function in protein transport pathways, peroxisome assembly, cell division cycle, and gene expression, respectively. Possible implications of these observations are discussed...
RNase E polypeptides lacking a carboxyl-terminal half suppress a mukB mutation in Escherichia coliM Kido
Department of Molecular Cell Biology, Institute of Molecular Embryology and Genetics, Kumamoto University School of Medicine, Kumamoto, Japan
J Bacteriol 178:3917-25. 1996..RNase E and PNPase of the multiprotein complex presumably cooperate for effective processing and turnover of specific substrates, such as mRNAs and other RNAs in vivo...
Carboxyl terminal region of the MukB protein in Escherichia coli is essential for DNA binding activityA Z Saleh
Department of Molecular Cell Biology, Kumamoto University School of Medicine, Japan
FEMS Microbiol Lett 143:211-6. 1996..This mutant MukB protein was defective for DNA binding, while the ATP binding activity remained unaffected. A truncated MukB protein that is short of 109 amino acids from the C-terminus failed to bind DNA...
The assembly and migration of SeqA-Gfp fusion in living cells of Escherichia coliT Onogi
Department of Molecular Cell Biology, Kumamoto University School of Medicine, Japan
Mol Microbiol 31:1775-82. 1999..Immunoprecipitation of the fusion from cell extracts using anti-Gfp antibody indicated that the fusion was assembled with the wild-type SeqA protein...
New killing system controlled by two genes located immediately upstream of the mukB gene in Escherichia coliJ Feng
Department of Molecular Cell Biology, Kumamoto University School of Medicine, Japan
Mol Gen Genet 243:136-47. 1994..It was also demonstrated that KicA and KicB can function as a post-segregational killing system, when the genes are transferred from the E. coli chromosome onto a plasmid...
Bidirectional migration of SeqA-bound hemimethylated DNA clusters and pairing of oriC copies in Escherichia coliS Hiraga
Department of Molecular Cell Biology, Institute of Molecular Embryology and Genetics, Kumamoto University School of Medicine, Kumamoto 862 0976, Japan
Genes Cells 5:327-41. 2000..A single SeqA focus, localized at midcell, separates into two foci and these foci migrate abruptly in opposite directions...
Cloning, sequencing, and characterization of multicopy suppressors of a mukB mutation in Escherichia coliK Yamanaka
Department of Molecular Cell Biology, Kumamoto University School of Medicine, Japan
Mol Microbiol 13:301-12. 1994..Hence, the msmB and msmC genes were renamed cspC and cspE, respectively. Possible mechanisms for suppression of the mukB106 mutation are discussed...
Two mutant alleles of mukB, a gene essential for chromosome partition in Escherichia coliK Yamanaka
Department of Molecular Cell Biology, Kumamoto University School of Medicine, Japan
FEMS Microbiol Lett 123:27-31. 1994....
Identification of the cpdA gene encoding cyclic 3',5'-adenosine monophosphate phosphodiesterase in Escherichia coliR Imamura
Department of Molecular Cell Biology, Institute of Molecular Embryology and Genetics, Kumamoto University School of Medicine, Kumamoto, Kumamoto 862, Japan
J Biol Chem 271:25423-9. 1996..Our results suggested that regulation of intracellular concentration of cAMP is dependent not only on synthesis of cAMP but also on hydrolysis of cAMP by cAMP phosphodiesterase...
Multicopy suppressors, mssA and mssB, of an smbA mutation of Escherichia coliK Yamanaka
Department of Molecular Cell Biology, Kumamoto University School of Medicine, Japan
Mol Gen Genet 243:9-16. 1994..MssA and MssB might also relate to the expression of some of these genes. Multiple copies mssA and mssB suppressed the various phenotypic features of the smbA2 mutant to various extents, suppressing the cold-sensitive growth completely...
Characterization of translucent segments observed in an smbA mutant of Escherichia coliK Yamanaka
Department of Molecular Cell Biology, Institute of Molecular Embryology and Genetics, Kumamoto University School of Medicine, Japan
FEMS Microbiol Lett 116:61-6. 1994..Electron microscopic observation revealed that the translucent segments resulted from the enlargement of a periplasmic space by separation of the inner membrane from the peptidoglycan layer and the outer membrane...
E.coli MukB protein involved in chromosome partition forms a homodimer with a rod-and-hinge structure having DNA binding and ATP/GTP binding activitiesH Niki
Department of Molecular Cell Biology, Kumamoto University School of Medicine, Japan
EMBO J 11:5101-9. 1992..Photoaffinity cross-linking experiments showed that MukB binds to ATP and GTP in the presence of Zn2+. Throughout the purification steps, acyl carrier protein was co-purified with MukB...
Characterization of the smtA gene encoding an S-adenosylmethionine-dependent methyltransferase of Escherichia coliK Yamanaka
Department of Molecular Cell Biology, Kumamoto University School of Medicine, Japan
FEMS Microbiol Lett 133:59-63. 1995..The smtA gene is not essential for cell growth and its expression is positively regulated by H-NS, an Escherichia coli histone-like protein...
Defective plasmid partition in ftsH mutants of Escherichia coliT Inagawa
Division of Molecular Cell Biology, Institute of Molecular Embryology and Genetics, Kumamoto University, Japan
Mol Genet Genomics 265:755-62. 2001..It is likely that altered membrane structure affects the localization or activity of a putative plasmid partitioning apparatus located at positions equivalent to 1/4 and 3/4 of the cell length...
Identification and characterization of the smbA gene, a suppressor of the mukB null mutant of Escherichia coliK Yamanaka
Department of Molecular Cell Biology, Kumamoto University School of Medicine, Japan
J Bacteriol 174:7517-26. 1992..The smbA mutants are sensitive to a detergent, sodium dodecyl sulfate, and they show a novel morphological phenotype under nonpermissive conditions, suggesting a defect in specific membrane sites...
Escherichia coli FtsH is a membrane-bound, ATP-dependent protease which degrades the heat-shock transcription factor sigma 32T Tomoyasu
Department of Molecular Cell Biology, Kumamoto University School of Medicine, Japan
EMBO J 14:2551-60. 1995..We conclude that FtsH is a novel membrane-bound, ATP-dependent metalloprotease with activity for sigma 32. These findings indicate a new mechanism of gene regulation in E. coli...
Involvement of DnaK protein in mini-F plasmid replication: temperature-sensitive seg mutations are located in the dnaK geneB Ezaki
Department of Molecular Genetics, Kumamoto University Medical School, Japan
Mol Gen Genet 218:183-9. 1989..The active dnaK (seg) gene product is therefore essential for replication of the mini-F plasmid at both 30 degrees and 42 degrees C...
Partitioning of a mini-F plasmid into anucleate cells of the mukB null mutantB Ezaki
Department of Molecular Genetics, Kumamoto University Medical School, Japan
J Bacteriol 173:6643-6. 1991..In the null mutant, the plasmid was partitioned into both nucleate and anucleate daughter cells, independently of host chromosomes...
Mutants defective in chromosome partitioning in E. coliS Hiraga
Department of Molecular Genetics, Kumamoto University Medical School, Japan
Res Microbiol 142:189-94. 1991..The mukC and mukD genes are located at 88 and 41 min of the chromosome map, respectively...
Structure and function of the ftsH gene in Escherichia coliT Ogura
Department of Molecular Genetics, Kumamoto University Medical School, Japan
Res Microbiol 142:279-82. 1991..A wild type chromosomal fragment able to complement the sfh mutations was cloned. We also identified another gene (ftsJ) affecting cell division in the region upstream of the ftsH gene...
The new gene mukB codes for a 177 kd protein with coiled-coil domains involved in chromosome partitioning of E. coliH Niki
Department of Molecular Genetics, Kumamoto University Medical School, Japan
EMBO J 10:183-93. 1991..At high temperature the mukB null mutants cannot form colonies and many nucleoids are distributed irregularly along elongated cells. We conclude that the MukB protein is required for chromosome partitioning in E. coli...
New topoisomerase essential for chromosome segregation in E. coliJ Kato
Department of Bacteriology, National Institute of Health of Japan, Tokyo
Cell 63:393-404. 1990..A topA mutation defective in topoisomerase I could be compensated by increasing both the parC and the parE gene dosage. It is suggested that the parC and parE genes code for the subunits of a new topoisomerase, named topo IV...
Maintenance of plasmids in HU and IHF mutants of Escherichia coliT Ogura
Department of Molecular Genetics, Kumamoto University Medical School, Japan
Mol Gen Genet 220:197-203. 1990..The mini-P1 plasmid was slightly unstable in the himA-hip mutant, whereas the mini-F plasmid was stable...
Nucleotide sequence of the tolC gene of Escherichia coliH Niki
Department of Molecular Genetics, Kumamoto University Medical School, Japan
Nucleic Acids Res 18:5547. 1990
Chromosome partitioning in Escherichia coli: novel mutants producing anucleate cellsS Hiraga
Department of Molecular Genetics, Kumamoto University Medical School, Japan
J Bacteriol 171:1496-505. 1989..Cloning of the mukA gene indicates that the mukA1 mutation is recessive and that the mukA gene is identical to the tolC gene coding for an outer membrane protein...
Linear multimer formation of plasmid DNA in Escherichia coli hopE (recD) mutantsH Niki
Department of Molecular Genetics, Kumamoto University Medical School, Japan
Mol Gen Genet 224:1-9. 1990..The recBC xth A mutant is defective in the conjugative type of recombination. Linear plasmid multimers were not detected in the recBC strain. We propose models to account for linear multimer formation of plasmids in various mutants...
