Y Nakamura

Summary

Affiliation: Kazusa DNA Research Institute
Country: Japan

Publications

  1. ncbi CyanoBase, a www database containing the complete nucleotide sequence of the genome of Synechocystis sp. strain PCC6803
    Y Nakamura
    Kazusa DNA Research Institute, 1532 3 Yana, Kisarazu, Chiba 292, Japan
    Nucleic Acids Res 26:63-7. 1998
  2. ncbi The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications
    Toshiaki Katayama
    Database Center for Life Science, Research Organization of Information and Systems, 2 11 16 Yayoi, Bunkyo ku, Tokyo, 113 0032, Japan
    J Biomed Semantics 2:4. 2011
  3. ncbi Codon usage tabulated from international DNA sequence databases: status for the year 2000
    Y Nakamura
    Laboratory of Gene Structure 2, Kazusa DNA Research Institute, 1532 3 Yana, Kisarazu, Chiba 292 0812, Japan
    Nucleic Acids Res 28:292. 2000
  4. ncbi CyanoBase, the genome database for Synechocystis sp. strain PCC6803: status for the year 2000
    Y Nakamura
    Kazusa DNA Research Institute, 1532 3 Yana, Kisarazu, Chiba 292 0812, Japan
    Nucleic Acids Res 28:72. 2000
  5. ncbi Codon usage tabulated from the international DNA sequence databases; its status 1999
    Y Nakamura
    Laboratory of Gene Structure 2, Kazusa DNA Research Institute, 1532 3 Yana, Kisarazu, Chiba 292 0812, Japan
    Nucleic Acids Res 27:292. 1999
  6. ncbi Extension of CyanoBase. CyanoMutants: repository of mutant information on Synechocystis sp. strain PCC6803
    Y Nakamura
    Kazusa DNA Research Institute, 1532 3 Yana, Kisarazu, Chiba 292 0812, Japan
    Nucleic Acids Res 27:66-8. 1999
  7. ncbi Codon usage tabulated from the international DNA sequence databases
    Y Nakamura
    Laboratory of Gene Structure 2, Kazusa DNA Research Institute, Kisarazu, Chiba 292, Japan
    Nucleic Acids Res 25:244-5. 1997
  8. ncbi Structural analysis of a Lotus japonicus genome. I. Sequence features and mapping of fifty-six TAC clones which cover the 5.4 mb regions of the genome
    S Sato
    Kazusa DNA Research Institute, Kisarazu, Japan
    DNA Res 8:311-8. 2001
  9. ncbi Codon usage tabulated from the international DNA sequence databases
    Y Nakamura
    Laboratory of Gene Structure 2, Kazusa DNA Research Institute, 1532 3 Yana, Kisarazu, Chiba 292, Japan
    Nucleic Acids Res 26:334. 1998
  10. ncbi High levels of expression and nuclear localization of interleukin-1 beta converting enzyme (ICE) and CPP32 in favorable human neuroblastomas
    A Nakagawara
    Division of Biochemistry, Chiba Cancer Center Research Institute, Japan
    Cancer Res 57:4578-84. 1997

Collaborators

  • R Irie
  • M Yasuda
  • T Nishikawa
  • M Yamada
  • T Sugiyama
  • M Hirosawa
  • T Kuritz
  • H Matsui
  • A Watanabe
  • T Yamamoto
  • A Ishikawa
  • K Nagai
  • A Nakagawara
  • T Kimura
  • S Sato
  • Toshiaki Katayama
  • H T Yudate
  • T Kaneko
  • Raoul Jp Bonnal
  • Bruno Aranda
  • Kazuki Oshita
  • Nicholas Putnam
  • Naohisa Goto
  • Young Joo Kim
  • Toshihisa Takagi
  • Vachiranee Limviphuvadh
  • TODD HARRIS
  • Kiyoko F Aoki-Kinoshita
  • Isaac Ho
  • Shuichi Kawashima
  • Takeshi Kawashima
  • Arek Kasprzyk
  • Noriyuki Satoh
  • Riu Yamashita
  • Syed Haider
  • James Taylor
  • Oswaldo Trelles
  • Paul Mk Gordon
  • Yunsun Nam
  • Keiichiro Ono
  • Kozo Nishida
  • Soichi Ogishima
  • Greg Von Kuster
  • Luke McCarthy
  • Hong Woo Chun
  • Yasumasa Shigemoto
  • Yulia Kovarskaya
  • Chisato Yamasaki
  • Kunihiro Nishimura
  • Masumi Itoh
  • Shin Kawano
  • Shujiro Okuda
  • Yasunori Yamamoto
  • Martin Senger
  • Fumikazu Konishi
  • Keun Joon Park
  • Akira R Kinjo
  • Kazuharu Arakawa
  • Takatomo Fujisawa
  • Jan Aerts
  • Tatsuya Nishizawa
  • Takashi Hatakeyama
  • Alberto Labarga
  • Shinobu Okamoto
  • Hideaki Sugawara
  • Nobuhiro Kido
  • Tom Oinn
  • Jessica Severin
  • Mitsuteru Nakao
  • Jose M Fernandez
  • Mark D Wilkinson
  • Rutger Vos
  • Atsuko Yamaguchi
  • S Tabata
  • E Asamizu
  • Z Z Peng
  • S Sasamoto
  • M Takazawa
  • M Suwa
  • K Hayashi
  • D Yamaguchi
  • M Iriguchi
  • A Muraki
  • M Matsumoto
  • Y Kishida
  • A Matsuno
  • Y Suzuki
  • K Kawashima
  • M Kohara
  • Y Masuho

Detail Information

Publications13

  1. ncbi CyanoBase, a www database containing the complete nucleotide sequence of the genome of Synechocystis sp. strain PCC6803
    Y Nakamura
    Kazusa DNA Research Institute, 1532 3 Yana, Kisarazu, Chiba 292, Japan
    Nucleic Acids Res 26:63-7. 1998
    ..In addition, the main page of CyanoBase provides engines for similarity searches between a query sequence and the entire genome sequence and for keyword searches, in addition to numerous links to pages containing related information...
  2. ncbi The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications
    Toshiaki Katayama
    Database Center for Life Science, Research Organization of Information and Systems, 2 11 16 Yayoi, Bunkyo ku, Tokyo, 113 0032, Japan
    J Biomed Semantics 2:4. 2011
    ..abstract:..
  3. ncbi Codon usage tabulated from international DNA sequence databases: status for the year 2000
    Y Nakamura
    Laboratory of Gene Structure 2, Kazusa DNA Research Institute, 1532 3 Yana, Kisarazu, Chiba 292 0812, Japan
    Nucleic Acids Res 28:292. 2000
    ..These new tools will provide users with the ability to further analyze for variations in codon usage among different genomes...
  4. ncbi CyanoBase, the genome database for Synechocystis sp. strain PCC6803: status for the year 2000
    Y Nakamura
    Kazusa DNA Research Institute, 1532 3 Yana, Kisarazu, Chiba 292 0812, Japan
    Nucleic Acids Res 28:72. 2000
    ..The current URL of CyanoBase is http://www.kazusa.or.jp:8080/cyano/..
  5. ncbi Codon usage tabulated from the international DNA sequence databases; its status 1999
    Y Nakamura
    Laboratory of Gene Structure 2, Kazusa DNA Research Institute, 1532 3 Yana, Kisarazu, Chiba 292 0812, Japan
    Nucleic Acids Res 27:292. 1999
    ..The list of the codon usage of genes in an organism as well as the sum of the codon usage of the organism was made searchable by the name of organism through a web site http://www.dna.affrc.go.jp//CUTG.html..
  6. ncbi Extension of CyanoBase. CyanoMutants: repository of mutant information on Synechocystis sp. strain PCC6803
    Y Nakamura
    Kazusa DNA Research Institute, 1532 3 Yana, Kisarazu, Chiba 292 0812, Japan
    Nucleic Acids Res 27:66-8. 1999
    ..CyanoMutants can be accessed at http://www.kazusa.or. jp/cyano/mutants/..
  7. ncbi Codon usage tabulated from the international DNA sequence databases
    Y Nakamura
    Laboratory of Gene Structure 2, Kazusa DNA Research Institute, Kisarazu, Chiba 292, Japan
    Nucleic Acids Res 25:244-5. 1997
    ..The list of codon usage of genes in organisms was made searchable by name of organism through a web site. The compilation has been synchronized with a major release of GenBank...
  8. ncbi Structural analysis of a Lotus japonicus genome. I. Sequence features and mapping of fifty-six TAC clones which cover the 5.4 mb regions of the genome
    S Sato
    Kazusa DNA Research Institute, Kisarazu, Japan
    DNA Res 8:311-8. 2001
    ..japonicus Gifu B-129 and Miyakojima MG-20. The sequence data, gene information and mapping information are available through the World Wide Web at http://www.kazusa.or.jp/lotus/...
  9. ncbi Codon usage tabulated from the international DNA sequence databases
    Y Nakamura
    Laboratory of Gene Structure 2, Kazusa DNA Research Institute, 1532 3 Yana, Kisarazu, Chiba 292, Japan
    Nucleic Acids Res 26:334. 1998
    ..The list of codonusage of genes in organisms was made searchableby name of organism through a web site http://www.dna.affrc.go.jp/ approximately nakamura/CUTG.html The compilation is synchronized with major release of GenBank...
  10. ncbi High levels of expression and nuclear localization of interleukin-1 beta converting enzyme (ICE) and CPP32 in favorable human neuroblastomas
    A Nakagawara
    Division of Biochemistry, Chiba Cancer Center Research Institute, Japan
    Cancer Res 57:4578-84. 1997
    ..Our results suggest that ICE and CPP32 cysteine proteases may play an important role in regulating the apoptotic process of the favorable neuroblastomas...
  11. ncbi HUNT: launch of a full-length cDNA database from the Helix Research Institute
    H T Yudate
    Helix Research Institute, Inc 1532 3, Yana, Kisarazu, 292 0812 Chiba, Japan
    Nucleic Acids Res 29:185-8. 2001
    ..The HUNT database can be accessed at http://www.hri.co.jp/HUNT...
  12. ncbi Complete genomic sequence of the filamentous nitrogen-fixing cyanobacterium Anabaena sp. strain PCC 7120
    T Kaneko
    Kazusa DNA Research Institute, Kisarazu, Chiba, Japan
    DNA Res 8:205-13; 227-53. 2001
    ..Only 37% of the Anabaena genes showed significant sequence similarity to those of Synechocystis, indicating a high degree of divergence of the gene information between the two cyanobacterial strains...
  13. ncbi Generation of 7137 non-redundant expressed sequence tags from a legume, Lotus japonicus
    E Asamizu
    Kazusa DNA Research Institute, Kisarazu, Chiba, Japan
    DNA Res 7:127-30. 2000
    ..The sequence data of individual ESTs are available at the web site: http://www.kazusa.or.jp/en/plant/lotus/EST/...