Research Topics
Genomes and Genes | Takakazu KanekoSummaryAffiliation: Kazusa DNA Research Institute Country: Japan Publications
| Collaborators
|
Detail Information
Publications
The genome of the versatile nitrogen fixer Azorhizobium caulinodans ORS571Kyung Bum Lee
Laboratory of Plant Biotechnology, Biotechnology Research Center, University of Tokyo, Tokyo 113 8657, Japan
BMC Genomics 9:271. 2008..The host is a fast-growing, submergence-tolerant tropical legume on which A. caulinodans can efficiently induce nodule formation on the root system and on adventitious rootlets located on the stem...- Complete genomic structure of the bloom-forming toxic cyanobacterium Microcystis aeruginosa NIES-843Takakazu Kaneko
Kazusa DNA Research Institute, 2 6 7 Kazusa Kamatari, Kisarazu, Chiba 292 0818, Japan
DNA Res 14:247-56. 2007..Compared with other cyanobacteria, a relatively small number of genes for two component systems and a large number of genes for restriction-modification systems were notable characteristics of the M. aeruginosa genome... - Structural analysis of a Lotus japonicus genome. V. Sequence features and mapping of sixty-four TAC clones which cover the 6.4 mb regions of the genomeTomohiko Kato
Kazusa DNA Research Institute, 2-6-7 Kazusa-kamatari, Kisarazu, Chiba 292-0818, Japan
DNA Res 10:277-85. 2003..japonicus, MG-20 and Gifu B-129. The sequence data, gene information and mapping information are available through the World Wide Web at http://www.kazusa.or.jp/lotus/... - Complete genomic sequence of nitrogen-fixing symbiotic bacterium Bradyrhizobium japonicum USDA110 (supplement)Takakazu Kaneko
Kazusa DNA Research Institute, 2-6-7 Kazusa-kamatari, Kisarazu, Chiba 292-0812, Japan
DNA Res 9:225-56. 2002 - Comprehensive structural analysis of the genome of red clover (Trifolium pratense L.)Shusei Sato
Kazusa DNA Research Institute, Kazusa-Kamatari, Kisarazu, Chiba, Japan
DNA Res 12:301-64. 2005.... - Complete genome structure of the thermophilic cyanobacterium Thermosynechococcus elongatus BP-1 (supplement)Yasukazu Nakamura
Kazusa DNA Research Institute, Kisarazu, Chiba, Japan
DNA Res 9:135-48. 2002 - Genome structure of the legume, Lotus japonicusShusei Sato
Kazusa DNA Research Institute, 2 6 7 Kazusa Kamatari, Kisarazu, Chiba, Japan
DNA Res 15:227-39. 2008..This study provides the first opportunity to look into the complex and unique genetic system of legumes... - Complete genome structure of Gloeobacter violaceus PCC 7421, a cyanobacterium that lacks thylakoids (supplement)Yasukazu Nakamura
Kazusa DNA Research Institute, 2-6-7 Kazusa-ktaamatari, Kisarazu, Chiba 292-0818, Japan
DNA Res 10:181-201. 2003 - Structural analysis of a Lotus japonicus genome. IV. Sequence features and mapping of seventy-three TAC clones which cover the 7.5 mb regions of the genomeErika Asamizu
Kazusa DNA Research Institute, 2-6-7 Kazusa-kamatari, Kisarazu, Chiba 292-0818, Japan
DNA Res 10:115-22. 2003..japonicus, Gifu B-129 and Miyakojima MG-20. The sequence data, gene information and mapping information are available through the World Wide Web at http://www.kazusa.or.jp/lotus/... - Complete genome structure of Gloeobacter violaceus PCC 7421, a cyanobacterium that lacks thylakoidsYasukazu Nakamura
Kazusa DNA Research Institute, 2-6-7 Kazusa-kamatari, Kisarazu, Chiba 292-0818, Japan
DNA Res 10:137-45. 2003..These differences may reflect the phylogenetic distance between G. violaceus and other cyanobacteria... - Complete genomic structure of the cultivated rice endophyte Azospirillum sp. B510Takakazu Kaneko
Kazusa DNA Research Institute, Kisarazu, Chiba, Japan
DNA Res 17:37-50. 2010.... - CyanoBase: the cyanobacteria genome database update 2010Mitsuteru Nakao
Kazusa DNA Research Institute, 2 6 7 Kazusa Kamatari, Kisarazu, Chiba 292 0812, Japan
Nucleic Acids Res 38:D379-81. 2010..In this version, we updated these datasets and improved the navigation and the visual display of the data views. In addition, a web service API now enables users to retrieve the data in various formats with other tools, seamlessly... - Complete genomic sequence of nitrogen-fixing symbiotic bacterium Bradyrhizobium japonicum USDA110Takakazu Kaneko
Kazusa DNA Research Institute, 2-6-7 Kazusa-kamatari, Kisarazu, Chiba 292-0812, Japan
DNA Res 9:189-97. 2002..These observations suggest plasticity of the B. japonicum genome, which is probably due to complex genome rearrangements such as horizontal transfer and insertion of various DNA elements, and to homologous recombination... - Structural analysis of a Lotus japonicus genome. III. Sequence features and mapping of sixty-two TAC clones which cover the 6.7 Mb regions of the genomeTakakazu Kaneko
Kazusa DNA Research Institute, 2-6-7 Kazusa-kamatari, Kisarazu, Chiba 292-0818, Japan
DNA Res 10:27-33. 2003..The sequence data, gene information and mapping information are available through the World Wide Web at http://www.kazusa.or.jp/lotus/... - Structural analysis of four large plasmids harboring in a unicellular cyanobacterium, Synechocystis sp. PCC 6803Takakazu Kaneko
Kazusa DNA Research Institute, 2-6-7 Kazusa-kamatari, Kisarazu, Chiba 292-0818, Japan
DNA Res 10:221-8. 2003..The distribution data of a Cyanobacterium-specific sequence (HIP1: 5'-GCGATCGC-3') suggested that respective plasmids could have originated from different cyanobacterial strains... - Complete genome structure of the thermophilic cyanobacterium Thermosynechococcus elongatus BP-1Yasukazu Nakamura
Kazusa DNA Research Institute, Kisarazu, Chiba, Japan
DNA Res 9:123-30. 2002..A trace of genome rearrangement mediated by the group II introns was also observed... - Structural analysis of a Lotus japonicus genome. II. Sequence features and mapping of sixty-five TAC clones which cover the 6.5-mb regions of the genomeYasukazu Nakamura
Kazusa DNA Research Institute, Kisarazu, Chiba, Japan
DNA Res 9:63-70. 2002..japonicus, Gifu B-129 and Miyakojima MG-20. The sequence data, gene information and mapping information are available through the World Wide Web at http://www.kazusa.or.jp/lotus/... - Clustered genes required for synthesis and deposition of envelope glycolipids in Anabaena sp. strain PCC 7120Qing Fan
MSU-DOE Plant Research Laboratory and Department of Plant Biology, Michigan State University, East Lansing, MI 48824-1312, USA
Mol Microbiol 58:227-43. 2005..Electron microscopy indicates a role of all5345 through all5347 in the normal deposition of the envelope glycolipids... - Unique constitution of photosystem I with a novel subunit in the cyanobacterium Gloeobacter violaceus PCC 7421Hidetoshi Inoue
Graduate School of Human and Environmental Studies, Kyoto University, Kyoto 606 8501, Japan
FEBS Lett 578:275-9. 2004..These results suggest that PS I complexes of G. violaceus have unique structural properties... - Shoot control of root development and nodulation is mediated by a receptor-like kinaseLene Krusell
Laboratory of Gene Expression, Department of Molecular Biology, University of Aarhus, Gustav Wieds Vej 10, 8000 Aarhus C, Denmark
Nature 420:422-6. 2002..HAR1 encodes a putative serine/threonine receptor kinase, which is required for shoot-controlled regulation of root growth, nodule number, and for nitrate sensitivity of symbiotic development... - Bipolar localization of putative photoreceptor protein for phototaxis in thermophilic cyanobacterium Synechococcus elongatusYouichi Kondou
Graduate School of Integrated Science, Yokohama City University, Seto 22-2, Kanazawa-ku, Yokohama, 236-0027 Japan
Plant Cell Physiol 43:1585-8. 2002..Immunogold labeling of SePixJ in ultra-thin sections indicated that it existed only in both ends of the rod-shaped cell; probably bound with the cytoplasmic membrane... - Soybean seed extracts preferentially express genomic loci of Bradyrhizobium japonicum in the initial interaction with soybean, Glycine max (L.) MerrMin Wei
Department of Agricultural and Life Sciences, Obihiro University of Agriculture and Veterinary Medicine, Obihiro, Hokkaido, Japan
DNA Res 15:201-14. 2008..Several SSE-induced genomic loci likely participate in the initial interaction with legumes. Thus, these results can provide a basic knowledge for screening novel genes relevant to the B. japonicum- soybean symbiosis... - A receptor kinase gene of the LysM type is involved in legume perception of rhizobial signalsEsben Bjørn Madsen
Laboratory of Gene Expression, Department of Molecular Biology, University of Aarhus, Gustav Wieds Vej 10, 8000 Aarhus C, Denmark
Nature 425:637-40. 2003..Together with an atypical kinase domain structure this characterizes an unusual receptor-like kinase... - Functional differentiation of Lotus japonicus TT2s, R2R3-MYB transcription factors comprising a multigene familyKazuko Yoshida
Department of Biology, Ochanomizu University, Tokyo 112 8610 Japan
Plant Cell Physiol 49:157-69. 2008.... - SigC, the group 2 sigma factor of RNA polymerase, contributes to the late-stage gene expression and nitrogen promoter recognition in the cyanobacterium Synechocystis sp. strain PCC 6803Munehiko Asayama
Laboratory of Molecular Genetics, College of Agriculture, Ibaraki University, Inashiki, Japan
Biosci Biotechnol Biochem 68:477-87. 2004..DNase I footprinting also indicated binding and related sites of NtcA and/or RNAP with SigC on the nitrogen promoter. The unique promoter architecture and the mechanism of transcription by RNAP with SigC are also discussed... - Signal transduction genes required for heterocyst maturation in Anabaena sp. strain PCC 7120Qing Fan
MSU-DOE Plant Research Laboratory, Michigan State University, East Lansing, MI 48824-1312, USA
J Bacteriol 188:6688-93. 2006..One of these genes has a hitherto unreported mutant phenotype. Two previously identified regulatory genes were further characterized... - Use of segment-based microarray in the analysis of global gene expression in response to various environmental stresses in the cyanobacterium Anabaena sp. PCC 7120Naoki Sato
Department of Biochemistry and Molecular Biology, Faculty of Science, Saitama University, Saitama 338 8570, Japan
J Gen Appl Microbiol 50:1-8. 2004..These results suggest that these segment-based microarrays are useful especially for such large genomes as Anabaena, for which the number of genes exceeds either technical or practical limitations... - Comparative genomic analysis revealed a gene for monoglucosyldiacylglycerol synthase, an enzyme for photosynthetic membrane lipid synthesis in cyanobacteriaKoichiro Awai
Graduate School for Bioscience and Biotechnology, Tokyo Institute of Technology, Yokohama 226 8501, Japan
Plant Physiol 141:1120-7. 2006..The MGlcDG synthase and the plant MGDG synthase shared low similarity, supporting the presumption that cyanobacteria and plants utilize different pathways to synthesize MGDG... - [Genomics of plant-microbe interactions]Takakazu Kaneko
Tanpakushitsu Kakusan Koso 50:2225-30. 2005 - A comprehensive analysis of six dihydroflavonol 4-reductases encoded by a gene cluster of the Lotus japonicus genomeNorimoto Shimada
Department of Applied Biological Sciences, Nihon University, Fujisawa, Kanagawa 252 8510, Japan
J Exp Bot 56:2573-85. 2005..This work affords the basis for genetic and biochemical studies on the diversity of DFR and the flavonoid products... - Clustered genes required for the synthesis of heterocyst envelope polysaccharide in Anabaena sp. strain PCC 7120Guocun Huang
MSU-DOE Plant Research Laboratory, Michigan State University, East Lansing, MI 48824-1312, USA
J Bacteriol 187:1114-23. 2005..Complementation of mutations in alr2832 and alr2840 may have resulted from recombination. However, alr2825, alr2827, alr2831, alr2833, alr2837, alr2839, and alr2841, like hepA and hepC, are required for a Hep+ Fox+ phenotype... - Expression islands clustered on the symbiosis island of the Mesorhizobium loti genomeToshiki Uchiumi
Department of Chemistry and Bioscience, Faculty of Science, Kagoshima University, Kagoshima 890-0065, Japan
J Bacteriol 186:2439-48. 2004....