Paolo Romano

Summary

Affiliation: National Cancer Research Institute
Country: Italy

Publications

  1. ncbi Towards linked open gene mutations data
    Achille Zappa
    Bioinformatics, IRCCS AOU San Martino IST National Cancer Research Institute, Genoa, I 16132, Italy
    BMC Bioinformatics 13:S7. 2012
  2. ncbi Bioinformatics in Italy: BITS2011, the Eighth Annual Meeting of the Italian Society of Bioinformatics
    Paolo Romano
    Bioinformatics, IRCCS AOU San Martino IST National Cancer Research Institute, Genoa, I 16132, Italy
    BMC Bioinformatics 13:I1. 2012
  3. ncbi Biomedical semantics in the Semantic Web
    Andrea Splendiani
    Rothamsted Research, AL5 J2Q, Harpenden, UK
    J Biomed Semantics 2:S1. 2011
  4. ncbi A Semantic Web for bioinformatics: goals, tools, systems, applications
    Nicola Cannata
    Department of Mathematics and Computer Science, University of Camerino, Camerino (MC, I-62032, Italy
    BMC Bioinformatics 9:S1. 2008
  5. ncbi Tools and collaborative environments for bioinformatics research
    Paolo Romano
    Bioinformatics, National Cancer Research Institute IST, Genoa, Italy
    Brief Bioinform 12:549-61. 2011
  6. ncbi Cell Line Data Base: structure and recent improvements towards molecular authentication of human cell lines
    Paolo Romano
    Bioinformatics, Cell Bank, National Cancer Research Institute and IEIIT, National Research Council, Genova, Italy
    Nucleic Acids Res 37:D925-32. 2009
  7. ncbi Interoperability of CABRI Services and Biochemical Pathways Databases
    Paolo Romano
    National Cancer Research Institute, Genova, Italy
    Comp Funct Genomics 5:169-72. 2004
  8. ncbi SWS: accessing SRS sites contents through Web Services
    Paolo Romano
    Bioinformatics, National Cancer Research Institute IST, Genova, I 16132, Italy
    BMC Bioinformatics 9:S15. 2008
  9. ncbi Automation of in-silico data analysis processes through workflow management systems
    Paolo Romano
    Bioinformatics, Istituto Nazionale per la Ricerca sul Cancro, Largo Rosanna Benzi 10, I 16132, IST, Genova, Italy
    Brief Bioinform 9:57-68. 2008
  10. ncbi Improving interoperability between microbial information and sequence databases
    Paolo Romano
    Bioinformatics and Structural Proteomics, National Cancer Research Institute, Largo Rosanna Benzi 10, I 16132, Genova, Italy
    BMC Bioinformatics 6:S23. 2005

Detail Information

Publications18

  1. ncbi Towards linked open gene mutations data
    Achille Zappa
    Bioinformatics, IRCCS AOU San Martino IST National Cancer Research Institute, Genoa, I 16132, Italy
    BMC Bioinformatics 13:S7. 2012
    ..We present the development of a mapping from the IARC TP53 Mutation database to RDF and the implementation of servers publishing this data...
  2. ncbi Bioinformatics in Italy: BITS2011, the Eighth Annual Meeting of the Italian Society of Bioinformatics
    Paolo Romano
    Bioinformatics, IRCCS AOU San Martino IST National Cancer Research Institute, Genoa, I 16132, Italy
    BMC Bioinformatics 13:I1. 2012
    ..This preface provides a brief overview of the meeting and introduces the peer-reviewed manuscripts that were accepted for publication in this Supplement...
  3. ncbi Biomedical semantics in the Semantic Web
    Andrea Splendiani
    Rothamsted Research, AL5 J2Q, Harpenden, UK
    J Biomed Semantics 2:S1. 2011
    ....
  4. ncbi A Semantic Web for bioinformatics: goals, tools, systems, applications
    Nicola Cannata
    Department of Mathematics and Computer Science, University of Camerino, Camerino (MC, I-62032, Italy
    BMC Bioinformatics 9:S1. 2008
  5. ncbi Tools and collaborative environments for bioinformatics research
    Paolo Romano
    Bioinformatics, National Cancer Research Institute IST, Genoa, Italy
    Brief Bioinform 12:549-61. 2011
    ..Finally, we present the principles and some examples of Learning Management Systems. In conclusion, we try to devise some of the goals to be achieved in the short term for the exploitation of these technologies...
  6. ncbi Cell Line Data Base: structure and recent improvements towards molecular authentication of human cell lines
    Paolo Romano
    Bioinformatics, Cell Bank, National Cancer Research Institute and IEIIT, National Research Council, Genova, Italy
    Nucleic Acids Res 37:D925-32. 2009
    ..We also present a new related database, the Cell Line Integrated Molecular Authentication (CLIMA) database (http://bioinformatics.istge.it/clima/), that allows to link authentication data to actual cell lines...
  7. ncbi Interoperability of CABRI Services and Biochemical Pathways Databases
    Paolo Romano
    National Cancer Research Institute, Genova, Italy
    Comp Funct Genomics 5:169-72. 2004
    ..Revision of 'in-house' controlled vocabularies used by data annotators is under way, in order to improve the setting up of external links, and new links to biochemical pathways databases are being set up for some of the catalogues...
  8. ncbi SWS: accessing SRS sites contents through Web Services
    Paolo Romano
    Bioinformatics, National Cancer Research Institute IST, Genova, I 16132, Italy
    BMC Bioinformatics 9:S15. 2008
    ..SRS is a well know indexing and search engine for biomedical databanks offering public access to many databanks and analysis tools. Unfortunately, these data are not easily and efficiently accessible through Web Services...
  9. ncbi Automation of in-silico data analysis processes through workflow management systems
    Paolo Romano
    Bioinformatics, Istituto Nazionale per la Ricerca sul Cancro, Largo Rosanna Benzi 10, I 16132, IST, Genova, Italy
    Brief Bioinform 9:57-68. 2008
    ..We also briefly describe some of the available WMS and discuss the current limitations of this methodology and the ways in which they can be overcome...
  10. ncbi Improving interoperability between microbial information and sequence databases
    Paolo Romano
    Bioinformatics and Structural Proteomics, National Cancer Research Institute, Largo Rosanna Benzi 10, I 16132, Genova, Italy
    BMC Bioinformatics 6:S23. 2005
    ..In this paper, we present our efforts for the identification of cross-references between CABRI catalogues and the EMBL Data Library and related results...
  11. ncbi Web services and workflow management for biological resources
    Paolo Romano
    Bioinformatics and Structural Proteomics, National Cancer Research Institute IST, Genova, I 16132, Italy
    BMC Bioinformatics 6:S24. 2005
    ..Information on biological resources and on genomic sequences mutations are two examples of very specialized datasets that are useful for specific research domains...
  12. ncbi The role of informatics in the coordinated management of biological resources collections
    Paolo Romano
    Bioinformatics and Structural Proteomics, National Cancer Research Institute, Genoa, Italy
    Appl Bioinformatics 4:175-86. 2005
    ....
  13. ncbi Biowep: a workflow enactment portal for bioinformatics applications
    Paolo Romano
    Bioinformatics and Structural Proteomics, National Cancer Research Institute IST, Genova, Italy
    BMC Bioinformatics 8:S19. 2007
    ..Therefore, they are not viable to the majority of unskilled researchers. A portal enabling these to take profit from new technologies is still missing...
  14. ncbi IBWS: IST Bioinformatics Web Services
    Achille Zappa
    Department of Informatics, Systems and Telematics, University of Genoa, Via Opera Pia 13, I 16145, Genoa, Italy
    Nucleic Acids Res 38:W712-8. 2010
    ..istge.it/ibws/. WSDL definitions can also be retrieved directly at http://bioinformatics.istge.it:8080/axis/services...
  15. ncbi Survival Online: a web-based service for the analysis of correlations between gene expression and clinical and follow-up data
    Luca Corradi
    University of Genoa, Department of Communication, Computer and System Sciences, Viale Causa 13, Genoa, Italy
    BMC Bioinformatics 10:S10. 2009
    ..This article presents a novel method to perform correlations between microarray gene expression data and clinico-pathological data through a combination of available and newly developed processing tools...
  16. ncbi Trends in modeling Biomedical Complex Systems
    Luciano Milanesi
    Institute of Biomedical Technology, National Research Council, Milan, Italy
    BMC Bioinformatics 10:I1. 2009
    ....
  17. ncbi AgeWa: an integrated approach for antisense experiment design
    Patrizio Arrigo
    CNR Institute of Macromolecular Studies ISMAC, Via De Marini 6, 16149 Genova, Italy
    IEEE Trans Nanobioscience 1:167-71. 2002
    ..In this paper, we propose an integrative approach to ASO target selection: the proposed tool Automatic Gene Walk (AgeWa) combines a neural filter with database mining for the prediction of the optimal target for antisense action...
  18. ncbi An agent-based multilayer architecture for bioinformatics grids
    Ezio Bartocci
    Department of Mathematics and Computer Science, University of Camerino, 1 62032 Camerino, Italy
    IEEE Trans Nanobioscience 6:142-8. 2007
    ..In the architecture a pivotal role is assigned to an "alive" semantic index of resources, which is also expected to facilitate users' awareness of the bioinformatics domain...