Stefan P Albaum

Summary

Affiliation: University of Bielefeld
Country: Germany

Publications

  1. ncbi CoryneCenter - an online resource for the integrated analysis of corynebacterial genome and transcriptome data
    Heiko Neuweger
    Computational Methods for Emerging Technologies group, Bielefeld University, Bielefeld, Germany
    BMC Syst Biol 1:55. 2007
  2. ncbi Visualizing post genomics data-sets on customized pathway maps by ProMeTra-aeration-dependent gene expression and metabolism of Corynebacterium glutamicum as an example
    Heiko Neuweger
    Computational Genomics, Center for Biotechnology, Bielefeld University, Bielefeld, Germany
    BMC Syst Biol 3:82. 2009
  3. ncbi EDGAR: a software framework for the comparative analysis of prokaryotic genomes
    Jochen Blom
    Computational Genomics, Center for Biotechnology CeBiTec, Bielefeld University, Bielefeld, Germany
    BMC Bioinformatics 10:154. 2009
  4. ncbi EMMA 2--a MAGE-compliant system for the collaborative analysis and integration of microarray data
    Michael Dondrup
    Computational Genomics, Center for Biotechnology, Bielefeld University, 33594 Bielefeld, Germany
    BMC Bioinformatics 10:50. 2009
  5. ncbi Qupe--a Rich Internet Application to take a step forward in the analysis of mass spectrometry-based quantitative proteomics experiments
    Stefan P Albaum
    Computational Genomics, Center for Biotechnology CeBiTec, Biodata Mining and Applied Neuroinformatics Group, Faculty of Technology, Bielefeld University, Bielefeld, Germany
    Bioinformatics 25:3128-34. 2009
  6. ncbi MeltDB: a software platform for the analysis and integration of metabolomics experiment data
    Heiko Neuweger
    International NRW Graduate School in Bioinformatics and Genome Research, Bielefeld University, Germany
    Bioinformatics 24:2726-32. 2008
  7. ncbi Construction and evaluation of a whole genome microarray of Chlamydomonas reinhardtii
    Jörg Toepel
    Algae Biotechnology and Bioenergy, Dept, of Biology, Center for Biotechnology CeBiTec, Bielefeld University, 33615 Bielefeld, Germany
    BMC Genomics 12:579. 2011

Detail Information

Publications7

  1. ncbi CoryneCenter - an online resource for the integrated analysis of corynebacterial genome and transcriptome data
    Heiko Neuweger
    Computational Methods for Emerging Technologies group, Bielefeld University, Bielefeld, Germany
    BMC Syst Biol 1:55. 2007
    ..The discovery of transcriptional regulatory interactions has become a major topic in modern functional genomics...
  2. ncbi Visualizing post genomics data-sets on customized pathway maps by ProMeTra-aeration-dependent gene expression and metabolism of Corynebacterium glutamicum as an example
    Heiko Neuweger
    Computational Genomics, Center for Biotechnology, Bielefeld University, Bielefeld, Germany
    BMC Syst Biol 3:82. 2009
    ..It has become obvious that the application of web-based and user driven software tools has great potential and benefits from the use of open and standardized formats for the description of pathways...
  3. ncbi EDGAR: a software framework for the comparative analysis of prokaryotic genomes
    Jochen Blom
    Computational Genomics, Center for Biotechnology CeBiTec, Bielefeld University, Bielefeld, Germany
    BMC Bioinformatics 10:154. 2009
    ..A main task in comparative genomics is the identification of orthologous genes in different genomes and the classification of genes as core genes or singletons...
  4. ncbi EMMA 2--a MAGE-compliant system for the collaborative analysis and integration of microarray data
    Michael Dondrup
    Computational Genomics, Center for Biotechnology, Bielefeld University, 33594 Bielefeld, Germany
    BMC Bioinformatics 10:50. 2009
    ..Integration of genomic annotation data and other sources of external knowledge using open standards is therefore a key requirement for future integrated analysis systems...
  5. ncbi Qupe--a Rich Internet Application to take a step forward in the analysis of mass spectrometry-based quantitative proteomics experiments
    Stefan P Albaum
    Computational Genomics, Center for Biotechnology CeBiTec, Biodata Mining and Applied Neuroinformatics Group, Faculty of Technology, Bielefeld University, Bielefeld, Germany
    Bioinformatics 25:3128-34. 2009
    ....
  6. ncbi MeltDB: a software platform for the analysis and integration of metabolomics experiment data
    Heiko Neuweger
    International NRW Graduate School in Bioinformatics and Genome Research, Bielefeld University, Germany
    Bioinformatics 24:2726-32. 2008
    ..Currently there exists no such system that on the one hand supports preprocessing of raw datasets but also allows to visualize and integrate the results of higher level statistical analyses within a functional genomics context...
  7. ncbi Construction and evaluation of a whole genome microarray of Chlamydomonas reinhardtii
    Jörg Toepel
    Algae Biotechnology and Bioenergy, Dept, of Biology, Center for Biotechnology CeBiTec, Bielefeld University, 33615 Bielefeld, Germany
    BMC Genomics 12:579. 2011
    ..Based on the completed annotation of Chlamydomonas reinhardtii a new microarray on an Agilent platform was designed using an extended JGI 3.1 genome data set which included 15000 transcript models...