Sascha Laubinger

Summary

Affiliation: Max Planck Institute for Biological Cybernetics
Country: Germany

Publications

  1. ncbi Support vector machines-based identification of alternative splicing in Arabidopsis thaliana from whole-genome tiling arrays
    Johannes Eichner
    Friedrich Miescher Laboratory, Max Planck Society, Spemannstr, 39, 72076 Tubingen, Germany
    BMC Bioinformatics 12:55. 2011
  2. ncbi At-TAX: a whole genome tiling array resource for developmental expression analysis and transcript identification in Arabidopsis thaliana
    Sascha Laubinger
    Department of Molecular Biology, Max Planck Institute for Developmental Biology, Spemannstr, 37 39, 72076 Tubingen, Germany
    Genome Biol 9:R112. 2008
  3. ncbi Stress-induced changes in the Arabidopsis thaliana transcriptome analyzed using whole-genome tiling arrays
    Georg Zeller
    Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 Tubingen, Germany
    Plant J 58:1068-82. 2009
  4. ncbi Global effects of the small RNA biogenesis machinery on the Arabidopsis thaliana transcriptome
    Sascha Laubinger
    Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 Tubingen, Germany
    Proc Natl Acad Sci U S A 107:17466-73. 2010
  5. ncbi Dual roles of the nuclear cap-binding complex and SERRATE in pre-mRNA splicing and microRNA processing in Arabidopsis thaliana
    Sascha Laubinger
    Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 Tubingen, Germany
    Proc Natl Acad Sci U S A 105:8795-800. 2008
  6. ncbi Functional and expression analysis of Arabidopsis SPA genes during seedling photomorphogenesis and adult growth
    Kirsten Fittinghoff
    Department of Plant Developmental and Molecular Biology, Geb. 26.03.02, , , Germany
    Plant J 47:577-90. 2006
  7. ncbi The SPA1-like proteins SPA3 and SPA4 repress photomorphogenesis in the light
    Sascha Laubinger
    Department of Plant Developmental and Molecular Biology, University of Dusseldorf, Geb 26 03 02, D 40225 Dusseldorf, Germany
    Plant J 35:373-85. 2003
  8. ncbi The SPA quartet: a family of WD-repeat proteins with a central role in suppression of photomorphogenesis in arabidopsis
    Sascha Laubinger
    Department of Plant Developmental and Molecular Biology, , , Germany
    Plant Cell 16:2293-306. 2004
  9. ncbi Arabidopsis SPA proteins regulate photoperiodic flowering and interact with the floral inducer CONSTANS to regulate its stability
    Sascha Laubinger
    Department of Plant Developmental and Molecular Biology, Geb 26 03 02, University of Dusseldorf, D 40225 Dusseldorf, Germany
    Development 133:3213-22. 2006

Collaborators

Detail Information

Publications9

  1. ncbi Support vector machines-based identification of alternative splicing in Arabidopsis thaliana from whole-genome tiling arrays
    Johannes Eichner
    Friedrich Miescher Laboratory, Max Planck Society, Spemannstr, 39, 72076 Tubingen, Germany
    BMC Bioinformatics 12:55. 2011
    ..However, analyzing tiling array data is challenging, because of high noise levels and limited probe coverage...
  2. ncbi At-TAX: a whole genome tiling array resource for developmental expression analysis and transcript identification in Arabidopsis thaliana
    Sascha Laubinger
    Department of Molecular Biology, Max Planck Institute for Developmental Biology, Spemannstr, 37 39, 72076 Tubingen, Germany
    Genome Biol 9:R112. 2008
    ..Visualizations of gene expression estimates, transcribed regions, and tiling probe measurements are accessible online at the At-TAX homepage...
  3. ncbi Stress-induced changes in the Arabidopsis thaliana transcriptome analyzed using whole-genome tiling arrays
    Georg Zeller
    Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 Tubingen, Germany
    Plant J 58:1068-82. 2009
    ....
  4. ncbi Global effects of the small RNA biogenesis machinery on the Arabidopsis thaliana transcriptome
    Sascha Laubinger
    Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 Tubingen, Germany
    Proc Natl Acad Sci U S A 107:17466-73. 2010
    ..Furthermore, our results suggest that the DCL1 is not only involved in miRNA action but also contributes to silencing of a subset of transposons, apparently through an effect on DNA methylation...
  5. ncbi Dual roles of the nuclear cap-binding complex and SERRATE in pre-mRNA splicing and microRNA processing in Arabidopsis thaliana
    Sascha Laubinger
    Department of Molecular Biology, Max Planck Institute for Developmental Biology, 72076 Tubingen, Germany
    Proc Natl Acad Sci U S A 105:8795-800. 2008
    ..Taken together, our results uncover dual roles in splicing and miRNA processing that distinguish SE and the cap-binding complex from specialized miRNA processing factors such as DCL1 and HYL1...
  6. ncbi Functional and expression analysis of Arabidopsis SPA genes during seedling photomorphogenesis and adult growth
    Kirsten Fittinghoff
    Department of Plant Developmental and Molecular Biology, Geb. 26.03.02, , , Germany
    Plant J 47:577-90. 2006
    ..The abundance of SPA2 mRNA, in contrast, is not altered by light. Taken together, the analysis of SPA transcript levels suggests that differences in SPA gene expression patterns contribute to divergence in SPA1-SPA4 function...
  7. ncbi The SPA1-like proteins SPA3 and SPA4 repress photomorphogenesis in the light
    Sascha Laubinger
    Department of Plant Developmental and Molecular Biology, University of Dusseldorf, Geb 26 03 02, D 40225 Dusseldorf, Germany
    Plant J 35:373-85. 2003
    ..Taken together, our results have identified two new loci coding for negative regulators that may be involved in fine tuning of light responses by interacting with COP1...
  8. ncbi The SPA quartet: a family of WD-repeat proteins with a central role in suppression of photomorphogenesis in arabidopsis
    Sascha Laubinger
    Department of Plant Developmental and Molecular Biology, , , Germany
    Plant Cell 16:2293-306. 2004
    ..Taken together, our results have identified a new family of proteins that is essential for suppression of photomorphogenesis in darkness...
  9. ncbi Arabidopsis SPA proteins regulate photoperiodic flowering and interact with the floral inducer CONSTANS to regulate its stability
    Sascha Laubinger
    Department of Plant Developmental and Molecular Biology, Geb 26 03 02, University of Dusseldorf, D 40225 Dusseldorf, Germany
    Development 133:3213-22. 2006
    ..Taken together, our results suggest, that SPA proteins regulate photoperiodic flowering by controlling the stability of the floral inducer CO...