Andreas Kowarsch

Summary

Country: Germany

Publications

  1. ncbi PhenomiR: a knowledgebase for microRNA expression in diseases and biological processes
    Andreas Ruepp
    Institute for Bioinformatics and Systems Biology MIPS, Helmholtz Center Munich German Research Center for Environmental Health GmbH, Ingolstadter Landstrasse 1, D 85764 Neuherberg, Germany
    Genome Biol 11:R6. 2010
  2. ncbi MicroRNAs coordinately regulate protein complexes
    Steffen Sass
    MIPS, Institute for Bioinformatics and System Biology, Helmholtz Center Munich, German Research Center for Environmental Health, Ingolstädter Landstraße 1, D 85764 Neuherberg, Germany
    BMC Syst Biol 5:136. 2011
  3. ncbi Tissue-specific target analysis of disease-associated microRNAs in human signaling pathways
    Andreas Kowarsch
    Institute for Bioinformatics and Systems Biology, Helmholtz Zentrum Munchen, Neuherberg, Germany
    PLoS ONE 5:e11154. 2010
  4. ncbi Knowledge-based matrix factorization temporally resolves the cellular responses to IL-6 stimulation
    Andreas Kowarsch
    Institute for Bioinformatics and Systems Biology, Helmholtz Zentrum Munchen, Neuherberg, Germany
    BMC Bioinformatics 11:585. 2010
  5. ncbi miTALOS: analyzing the tissue-specific regulation of signaling pathways by human and mouse microRNAs
    Andreas Kowarsch
    Institute for Bioinformatics and Systems Biology, Helmholtz Zentrum Munchen, Neuherberg, Germany
    RNA 17:809-19. 2011
  6. ncbi PhenomiR: microRNAs in human diseases and biological processes
    Andreas Ruepp
    Institute for Bioinformatics and Systems Biology MIPS, Helmholtz Zentrum Munchen, German Research Center for Environmental Health, Neuherberg, Germany
    Methods Mol Biol 822:249-60. 2012

Collaborators

Detail Information

Publications6

  1. ncbi PhenomiR: a knowledgebase for microRNA expression in diseases and biological processes
    Andreas Ruepp
    Institute for Bioinformatics and Systems Biology MIPS, Helmholtz Center Munich German Research Center for Environmental Health GmbH, Ingolstadter Landstrasse 1, D 85764 Neuherberg, Germany
    Genome Biol 11:R6. 2010
    ..Using the PhenomiR dataset, we could demonstrate that, depending on disease type, independent information from cell culture studies contrasts with conclusions drawn from patient studies...
  2. ncbi MicroRNAs coordinately regulate protein complexes
    Steffen Sass
    MIPS, Institute for Bioinformatics and System Biology, Helmholtz Center Munich, German Research Center for Environmental Health, Ingolstädter Landstraße 1, D 85764 Neuherberg, Germany
    BMC Syst Biol 5:136. 2011
    ..Interactions between targets of co-expressed miRNAs (including miRNA clusters) have not yet been systematically investigated...
  3. ncbi Tissue-specific target analysis of disease-associated microRNAs in human signaling pathways
    Andreas Kowarsch
    Institute for Bioinformatics and Systems Biology, Helmholtz Zentrum Munchen, Neuherberg, Germany
    PLoS ONE 5:e11154. 2010
    ..Our analysis provides systematic insights into the interaction of disease-associated microRNAs and signaling pathways and uncovers differences in cellular locations and process types of microRNA targets and disease-associated proteins...
  4. ncbi Knowledge-based matrix factorization temporally resolves the cellular responses to IL-6 stimulation
    Andreas Kowarsch
    Institute for Bioinformatics and Systems Biology, Helmholtz Zentrum Munchen, Neuherberg, Germany
    BMC Bioinformatics 11:585. 2010
    ..However, such correlation-based methods have so far not be applied in bioinformatics, because large scale biological data rarely imply a natural order that allows the definition of a delayed correlation function...
  5. ncbi miTALOS: analyzing the tissue-specific regulation of signaling pathways by human and mouse microRNAs
    Andreas Kowarsch
    Institute for Bioinformatics and Systems Biology, Helmholtz Zentrum Munchen, Neuherberg, Germany
    RNA 17:809-19. 2011
    ..miTALOS provides novel features that accomplish a substantial support to systematically infer regulation of signaling pathways mediated by miRNAs. The web-server is freely accessible at http://hmgu.de/cmb/mitalos...
  6. ncbi PhenomiR: microRNAs in human diseases and biological processes
    Andreas Ruepp
    Institute for Bioinformatics and Systems Biology MIPS, Helmholtz Zentrum Munchen, German Research Center for Environmental Health, Neuherberg, Germany
    Methods Mol Biol 822:249-60. 2012
    ..We summarize the PhenomiR data structure and its content and show how to access the database and use it in everyday miRNA profile analysis using the R language...